17-27901983-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27901983
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27901983
    reference: chr 17
allele count: 9
allele frequency: 1.753907315742292e-4
allele num: 51314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-4T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2032-51T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2074-51T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2023-51T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*68-51T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2101-51T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14266A>G
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15901
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25498
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 7176
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2074-4T>C
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-27901992-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27901992
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27901992
    reference: chr 17
allele count: 1
allele frequency: 1.919680565153959e-5
allele num: 52092
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2101-60G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2032-60G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2074-60G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14275C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*68-60G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2023-60G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-13G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15671
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4996
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-27901995-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27901995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27901995
    reference: chr 17
allele count: 1
allele frequency: 1.879911268188141e-5
allele num: 53194
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14278A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2074-63T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2032-63T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-16T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2101-63T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2023-63T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*68-63T>C
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-27901998-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27901998
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27901998
    reference: chr 17
allele count: 1
allele frequency: 1.850960648576611e-5
allele num: 54026
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14281T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2032-66A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2101-66A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*68-66A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2074-66A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-19A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2023-66A>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14885
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26748
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4935
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum

17-27901998-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27901998
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27901998
    reference: chr 17
allele count: 1
allele frequency: 1.850960648576611e-5
allele num: 54026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2032-66A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2074-66A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2023-66A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-19A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14281T>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*68-66A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2101-66A>C
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5846
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4935
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

17-27902022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902022
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902022
    reference: chr 17
allele count: 9
allele frequency: 1.2881064834693e-4
allele num: 69870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+75G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+75G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-43G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+75G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+75G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+75G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14305C>T
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22185
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

17-27902023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902023
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902023
    reference: chr 17
allele count: 3
allele frequency: 4.154434166066582e-5
allele num: 72212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+74C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14306G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+74C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+74C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+74C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-44C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+74C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20064
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

17-27902023-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902023
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902023
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 72212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+74C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+74C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+74C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+74C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+74C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14306G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.*2C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-44C>G
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 21217
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21096
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD

17-27902026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902026
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902026
    reference: chr 17
allele count: 1
allele frequency: 1.30432514217144e-5
allele num: 76668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-47G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+71G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+71G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+71G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.533G>A
  hgvsp: ENST00000578266.1:c.533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+71G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+71G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14309C>T
canonical: false
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ter178Ter
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

17-27902028-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902028
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902028
    reference: chr 17
allele count: 61
allele frequency: 7.638175853347023e-4
allele num: 79862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+69C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-49C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+69C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.531C>A
  hgvsp: ENST00000578266.1:c.531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+69C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+69C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14311G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+69C>A
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 25088
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17965
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 9.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Ile177Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-27902030-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902030
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902030
    reference: chr 17
allele count: 1
allele frequency: 1.21654501216545e-5
allele num: 82200
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14313T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-51A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+67A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+67A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+67A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.529A>G
  hgvsp: ENSP00000463435.1:p.Ile177Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+67A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+67A>G
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17010
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile177Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-27902031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902031
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902031
    reference: chr 17
allele count: 1
allele frequency: 1.204500012045e-5
allele num: 83022
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14314G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.528C>T
  hgvsp: ENST00000578266.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+66C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+66C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+66C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+66C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2074-52C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+66C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro176Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-27902042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902042
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902042
    reference: chr 17
allele count: 61
allele frequency: 6.471461913855294e-4
allele num: 94260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+55G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+55G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14325C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+55G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+55G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.517G>A
  hgvsp: ENSP00000463435.1:p.Val173Met
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+55G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+55G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32015
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Val173Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

17-27902043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902043
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902043
    reference: chr 17
allele count: 1
allele frequency: 1.038702037933398e-5
allele num: 96274
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+54C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.516C>T
  hgvsp: ENST00000578266.1:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+54C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+54C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+54C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14326G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+54C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+54C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly172Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-27902044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902044
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902044
    reference: chr 17
allele count: 2
allele frequency: 2.050062526907071e-5
allele num: 97558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+53G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+53G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14327C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.515G>A
  hgvsp: ENSP00000463435.1:p.Gly172Asp
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+53G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+53G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+53G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+53G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33297
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly172Asp
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/17-27902049-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902049
    reference: chr 17
allele count: 1
allele frequency: 9.770586626021026e-6
allele num: 102348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+48G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+48G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+48G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+48G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14332C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+48G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.510G>T
  hgvsp: ENST00000578266.1:c.510G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+48G>T
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly170Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-27902050-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902050
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902050
    reference: chr 17
allele count: 2
allele frequency: 1.938397720444281e-5
allele num: 103178
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14333C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+47G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.509G>A
  hgvsp: ENSP00000463435.1:p.Gly170Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+47G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+47G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+47G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+47G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+47G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly170Glu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-27902054-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902054
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902054
    reference: chr 17
allele count: 1
allele frequency: 9.469338282640808e-6
allele num: 105604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.505G>C
  hgvsp: ENSP00000463435.1:p.Ala169Pro
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+43G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+43G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+43G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+43G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14337C>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+43G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+43G>C
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala169Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

17-27902056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902056
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902056
    reference: chr 17
allele count: 2
allele frequency: 1.872764387512407e-5
allele num: 106794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+41G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+41G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.503G>A
  hgvsp: ENSP00000463435.1:p.Arg168Gln
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14339C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+41G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+41G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+41G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+41G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg168Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

17-27902060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902060
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902060
    reference: chr 17
allele count: 176
allele frequency: 1.613465099649805e-3
allele num: 109082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+37C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+37C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+37C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+37C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+37C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14343G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.499C>T
  hgvsp: ENSP00000463435.1:p.Pro167Ser
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+37C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 37213
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Pro167Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/17-27902061-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902061
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902061
    reference: chr 17
allele count: 1
allele frequency: 9.150302875025163e-6
allele num: 109286
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+36G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14344C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+36G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+36G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+36G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+36G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+36G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.498G>T
  hgvsp: ENST00000578266.1:c.498G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly166Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

17-27902069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902069
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902069
    reference: chr 17
allele count: 2
allele frequency: 1.80118517984834e-5
allele num: 111038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+28G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+28G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+28G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+28G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14352C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.490G>A
  hgvsp: ENSP00000463435.1:p.Val164Met
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+28G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+28G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val164Met
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-27902079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902079
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902079
    reference: chr 17
allele count: 1
allele frequency: 8.902658333778466e-6
allele num: 112326
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+18A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+18A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+18A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14362T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+18A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.480A>G
  hgvsp: ENST00000578266.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+18A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+18A>G
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg160Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-27902092-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902092
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902092
    reference: chr 17
allele count: 1
allele frequency: 8.790281464812504e-6
allele num: 113762
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2100+5A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2031+5A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2073+5A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2022+5A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2073+5A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.467A>G
  hgvsp: ENSP00000463435.1:p.Gln156Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*67+5A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14375T>C
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6790
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln156Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

17-27902100-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902100
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902100
    reference: chr 17
allele count: 1
allele frequency: 8.715356458079136e-6
allele num: 114740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2028A>C
  hgvsp: ENST00000581348.1:c.2028A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*64A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2070A>C
  hgvsp: ENST00000579937.1:c.2070A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14383T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2019A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2070A>C
  hgvsp: ENST00000225394.3:c.2070A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2097A>C
  hgvsp: ENST00000394869.3:c.2097A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.459A>C
  hgvsp: ENST00000578266.1:c.459A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro699Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-27902101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902101
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902101
    reference: chr 17
allele count: 1
allele frequency: 8.707767328456984e-6
allele num: 114840
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2096C>T
  hgvsp: ENSP00000378338.3:p.Pro699Leu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2027C>T
  hgvsp: ENSP00000462775.1:p.Pro676Leu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*63C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2069C>T
  hgvsp: ENSP00000464388.1:p.Pro690Leu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14384G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2069C>T
  hgvsp: ENSP00000225394.3:p.Pro690Leu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.458C>T
  hgvsp: ENSP00000463435.1:p.Pro153Leu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2018C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro699Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

17-27902113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902113
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902113
    reference: chr 17
allele count: 1
allele frequency: 8.613264427217915e-6
allele num: 116100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2015C>T
  hgvsp: ENSP00000462775.1:p.Ala672Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2057C>T
  hgvsp: ENSP00000225394.3:p.Ala686Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14396G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.446C>T
  hgvsp: ENSP00000463435.1:p.Ala149Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2084C>T
  hgvsp: ENSP00000378338.3:p.Ala695Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.2006C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2057C>T
  hgvsp: ENSP00000464388.1:p.Ala686Val
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39324
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala695Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

17-27902121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902121
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902121
    reference: chr 17
allele count: 2
allele frequency: 1.714765848723357e-5
allele num: 116634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2049C>T
  hgvsp: ENST00000225394.3:c.2049C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.438C>T
  hgvsp: ENST00000578266.1:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1998C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.2007C>T
  hgvsp: ENST00000581348.1:c.2007C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2076C>T
  hgvsp: ENST00000394869.3:c.2076C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2049C>T
  hgvsp: ENST00000579937.1:c.2049C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14404G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr692Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-27902132-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902132
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902132
    reference: chr 17
allele count: 3
allele frequency: 2.566120368152735e-5
allele num: 116908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2038T>C
  hgvsp: ENST00000225394.3:c.2038T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1987T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2065T>C
  hgvsp: ENST00000394869.3:c.2065T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.427T>C
  hgvsp: ENST00000578266.1:c.427T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1996T>C
  hgvsp: ENST00000581348.1:c.1996T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2038T>C
  hgvsp: ENST00000579937.1:c.2038T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14415A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu689Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

17-27902133-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902133
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902133
    reference: chr 17
allele count: 1
allele frequency: 8.553295584788819e-6
allele num: 116914
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1995T>C
  hgvsp: ENST00000581348.1:c.1995T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2037T>C
  hgvsp: ENST00000579937.1:c.2037T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14416A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2037T>C
  hgvsp: ENST00000225394.3:c.2037T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2064T>C
  hgvsp: ENST00000394869.3:c.2064T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1986T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*31T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.426T>C
  hgvsp: ENST00000578266.1:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His688His
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

17-27902141-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902141
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902140
    reference: chr 17
allele count: 1
allele frequency: 8.551540132377842e-6
allele num: 116938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1986delG
  hgvsp: ENSP00000462775.1:p.Lys663ArgfsTer6
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2028delG
  hgvsp: ENSP00000225394.3:p.Lys677ArgfsTer6
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14425delC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2055delG
  hgvsp: ENSP00000378338.3:p.Lys686ArgfsTer6
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1977delG
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2028delG
  hgvsp: ENSP00000464388.1:p.Lys677ArgfsTer6
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.417delG
  hgvsp: ENSP00000463435.1:p.Lys140ArgfsTer6
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*22delG
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6879
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys686ArgfsTer6
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: TC
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-27902144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902144
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902144
    reference: chr 17
allele count: 3
allele frequency: 2.567877563597768e-5
allele num: 116828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1975G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2026G>A
  hgvsp: ENSP00000464388.1:p.Glu676Lys
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2053G>A
  hgvsp: ENSP00000378338.3:p.Glu685Lys
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2026G>A
  hgvsp: ENSP00000225394.3:p.Glu676Lys
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.415G>A
  hgvsp: ENSP00000463435.1:p.Glu139Lys
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14427C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1984G>A
  hgvsp: ENSP00000462775.1:p.Glu662Lys
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39209
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu685Lys
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-27902156-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902156
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902156
    reference: chr 17
allele count: 3
allele frequency: 2.572589912017425e-5
allele num: 116614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1972G>A
  hgvsp: ENSP00000462775.1:p.Val658Met
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2014G>A
  hgvsp: ENSP00000464388.1:p.Val672Met
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.403G>A
  hgvsp: ENSP00000463435.1:p.Val135Met
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2041G>A
  hgvsp: ENSP00000378338.3:p.Val681Met
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14439C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1963G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2014G>A
  hgvsp: ENSP00000225394.3:p.Val672Met
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38590
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val681Met
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

17-27902157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902157
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902157
    reference: chr 17
allele count: 1
allele frequency: 8.577064928381508e-6
allele num: 116590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.402C>T
  hgvsp: ENST00000578266.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1971C>T
  hgvsp: ENST00000581348.1:c.1971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2040C>T
  hgvsp: ENST00000394869.3:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2013C>T
  hgvsp: ENST00000225394.3:c.2013C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2013C>T
  hgvsp: ENST00000579937.1:c.2013C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1962C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14440G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe680Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-27902164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902164
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902164
    reference: chr 17
allele count: 47
allele frequency: 4.039466446644664e-4
allele num: 116352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-4G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-4G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-4G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-4G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-4G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-4G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-4G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14447C>T
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38017
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10692
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
hgvs: c.2037-4G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-27902165-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902165
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902165
    reference: chr 17
allele count: 1
allele frequency: 8.596530440314289e-6
allele num: 116326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-5C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-5C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14448G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-5C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-5C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-5C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-5C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-5C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
hgvs: c.2037-5C>T
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-27902165-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902165
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902165
    reference: chr 17
allele count: 1
allele frequency: 8.596530440314289e-6
allele num: 116326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-5C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-5C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-5C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-5C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-5C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-5C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14448G>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-5C>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 8.75e1
  variant carriers: 0
hgvs: c.2037-5C>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

17-27902166-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902166
    reference: chr 17
allele count: 1
allele frequency: 8.60141063134354e-6
allele num: 116260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-6C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-6C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-6C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-6C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14449G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-6C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-6C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-6C>G
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 9.25e1
  variant carriers: 0
hgvs: c.2037-6C>G
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-27902167-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902167
    reference: chr 17
allele count: 1
allele frequency: 8.604963342856159e-6
allele num: 116212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-7C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-7C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-7C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-7C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-7C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-7C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14450G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-7C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
hgvs: c.2037-7C>T
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

17-27902173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902173
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902173
    reference: chr 17
allele count: 407
allele frequency: 3.506504695442406e-3
allele num: 116070
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14456G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-13C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-13C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-13C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-13C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-13C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-13C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-13C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37299
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

17-27902176-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902176
    reference: chr 17
allele count: 3
allele frequency: 2.587634556996964e-5
allele num: 115936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-16T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-16T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-16T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14459A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-16T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-16T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-16T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-16T>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-27902190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902190
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902190
    reference: chr 17
allele count: 1
allele frequency: 8.671372331385166e-6
allele num: 115322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-30C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14473G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-30C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-30C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-30C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-30C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-30C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-30C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-27902191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902191
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902191
    reference: chr 17
allele count: 1
allele frequency: 8.688550228508871e-6
allele num: 115094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-31C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-31C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-31C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-31C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14474G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-31C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-31C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-31C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/17-27902194-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902194
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902194
    reference: chr 17
allele count: 3
allele frequency: 2.609330967539923e-5
allele num: 114972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-34G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14477C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-34G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-34G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-34G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-34G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-34G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-34G>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36749
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

17-27902194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902194
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902194
    reference: chr 17
allele count: 1
allele frequency: 8.697769891799743e-6
allele num: 114972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-34G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14477C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-34G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-34G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-34G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-34G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-34G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-34G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

17-27902202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902202
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902202
    reference: chr 17
allele count: 1
allele frequency: 8.709435802748698e-6
allele num: 114818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-42C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-42C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14485G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-42C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-42C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-42C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-42C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-42C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

17-27902205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902205
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902205
    reference: chr 17
allele count: 1
allele frequency: 8.715660298424209e-6
allele num: 114736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-45C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14488G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-45C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-45C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-45C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-45C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-45C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-45C>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-27902208-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902208
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902208
    reference: chr 17
allele count: 1
allele frequency: 8.717483785480158e-6
allele num: 114712
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14491T>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-48A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-48A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-48A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-48A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-48A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-48A>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-48A>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-27902209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902209
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902209
    reference: chr 17
allele count: 2
allele frequency: 1.743831197140117e-5
allele num: 114690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2010-49G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14492C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2037-49G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2010-49G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1968-49G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1959-49G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*4-49G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.399-49G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6563
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35918
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

17-27902265-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902265
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902265
    reference: chr 17
allele count: 54
allele frequency: 4.701866815268877e-4
allele num: 114848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+41T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+41T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+41T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+41T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+41T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+41T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14548A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+41T>C
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-27902280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902280
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902280
    reference: chr 17
allele count: 1
allele frequency: 8.647676369359553e-6
allele num: 115638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+26G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+26G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+26G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+26G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+26G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+26G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14563C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+26G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

17-27902282-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902282
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902282
    reference: chr 17
allele count: 8
allele frequency: 6.910014338279752e-5
allele num: 115774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+24G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14565C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+24G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+24G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+24G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+24G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+24G>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+24G>C
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-27902282-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902282
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902282
    reference: chr 17
allele count: 1
allele frequency: 8.63751792284969e-6
allele num: 115774
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14565C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+24G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+24G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+24G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+24G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+24G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+24G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+24G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-27902285-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902285
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902285
    reference: chr 17
allele count: 2
allele frequency: 1.726280900428118e-5
allele num: 115856
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+21T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+21T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+21T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+21T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14568A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+21T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+21T>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+21T>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-27902287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902287
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902287
    reference: chr 17
allele count: 2
allele frequency: 1.722326518661408e-5
allele num: 116122
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14570C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+19G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+19G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+19G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+19G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+19G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+19G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+19G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-27902288-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902288
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902288
    reference: chr 17
allele count: 1
allele frequency: 8.616381464440194e-6
allele num: 116058
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+18A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+18A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+18A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14571T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+18A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+18A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+18A>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+18A>C
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

17-27902290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902290
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902290
    reference: chr 17
allele count: 1
allele frequency: 8.596234849136078e-6
allele num: 116330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+16G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+16G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+16G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+16G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+16G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+16G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+16G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14573C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-27902292-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902292
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902292
    reference: chr 17
allele count: 2
allele frequency: 1.715501269470939e-5
allele num: 116584
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+14G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+14G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+14G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+14G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14575C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+14G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+14G>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+14G>T
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-27902293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902293
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902293
    reference: chr 17
allele count: 1
allele frequency: 8.571477551300294e-6
allele num: 116666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+13G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+13G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+13G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+13G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+13G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+13G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+13G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14576C>T
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

17-27902300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902300
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902300
    reference: chr 17
allele count: 3
allele frequency: 2.56138793074007e-5
allele num: 117124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1967+6G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2036+6G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2009+6G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1958+6G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*3+6G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.398+6G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2009+6G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14583C>T
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2036+6G>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-27902308-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902308
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902308
    reference: chr 17
allele count: 2
allele frequency: 1.697792869269949e-5
allele num: 117800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1965C>G
  hgvsp: ENSP00000462775.1:p.Asp655Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2007C>G
  hgvsp: ENSP00000225394.3:p.Asp669Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2007C>G
  hgvsp: ENSP00000464388.1:p.Asp669Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2034C>G
  hgvsp: ENSP00000378338.3:p.Asp678Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1956C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14591G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.*1C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.396C>G
  hgvsp: ENSP00000463435.1:p.Asp132Glu
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp678Glu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

17-27902311-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902311
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902311
    reference: chr 17
allele count: 1
allele frequency: 8.471130387638926e-6
allele num: 118048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1953T>C
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2031T>C
  hgvsp: ENST00000394869.3:c.2031T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.393T>C
  hgvsp: ENST00000578266.1:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1962T>C
  hgvsp: ENST00000581348.1:c.1962T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.2004T>C
  hgvsp: ENST00000225394.3:c.2004T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.447T>C
  hgvsp: ENSP00000463746.1:p.Ter150ArgextTer46
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14594A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.2004T>C
  hgvsp: ENST00000579937.1:c.2004T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ter150ArgextTer46
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

17-27902317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902317
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902317
    reference: chr 17
allele count: 3
allele frequency: 2.532372157412253e-5
allele num: 118466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1956C>T
  hgvsp: ENST00000581348.1:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1998C>T
  hgvsp: ENST00000579937.1:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1947C>T
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14600G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.387C>T
  hgvsp: ENST00000578266.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2025C>T
  hgvsp: ENST00000394869.3:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1998C>T
  hgvsp: ENST00000225394.3:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.441C>T
  hgvsp: ENSP00000463746.1:p.Gln148Ter
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln148Ter
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-27902320-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902320
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902320
    reference: chr 17
allele count: 1
allele frequency: 8.426871608184177e-6
allele num: 118668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1995G>C
  hgvsp: ENSP00000464388.1:p.Glu665Asp
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1995G>C
  hgvsp: ENSP00000225394.3:p.Glu665Asp
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2022G>C
  hgvsp: ENSP00000378338.3:p.Glu674Asp
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.384G>C
  hgvsp: ENSP00000463435.1:p.Glu128Asp
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14603C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1953G>C
  hgvsp: ENSP00000462775.1:p.Glu651Asp
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.438G>C
  hgvsp: ENSP00000463746.1:p.Val147Leu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1944G>C
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu674Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-27902326-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902326
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902326
    reference: chr 17
allele count: 5
allele frequency: 4.193505099302201e-5
allele num: 119232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1938C>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14609G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.378C>A
  hgvsp: ENST00000578266.1:c.378C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1947C>A
  hgvsp: ENST00000581348.1:c.1947C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.432C>A
  hgvsp: ENSP00000463746.1:p.Pro145Thr
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1989C>A
  hgvsp: ENST00000579937.1:c.1989C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.2016C>A
  hgvsp: ENST00000394869.3:c.2016C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1989C>A
  hgvsp: ENST00000225394.3:c.1989C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro145Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-27902346-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902346
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902346
    reference: chr 17
allele count: 1
allele frequency: 8.300959590928711e-6
allele num: 120468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1969C>G
  hgvsp: ENSP00000464388.1:p.Gln657Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1927C>G
  hgvsp: ENSP00000462775.1:p.Gln643Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1918C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.412C>G
  hgvsp: ENSP00000463746.1:p.Ser138Ter
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.358C>G
  hgvsp: ENSP00000463435.1:p.Gln120Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.1996C>G
  hgvsp: ENSP00000378338.3:p.Gln666Glu
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14629G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1969C>G
  hgvsp: ENSP00000225394.3:p.Gln657Glu
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39601
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2468
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser138Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

17-27902353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902353
    reference: chr 17
allele count: 1
allele frequency: 8.290636555074699e-6
allele num: 120618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1962G>A
  hgvsp: ENST00000579937.1:c.1962G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1962G>A
  hgvsp: ENST00000225394.3:c.1962G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.1989G>A
  hgvsp: ENST00000394869.3:c.1989G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.351G>A
  hgvsp: ENST00000578266.1:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14636C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.405G>A
  hgvsp: ENSP00000463746.1:p.Glu136Lys
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1920G>A
  hgvsp: ENST00000581348.1:c.1920G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1911G>A
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu136Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-27902354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902354
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902354
    reference: chr 17
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.1988A>G
  hgvsp: ENSP00000378338.3:p.Lys663Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.350A>G
  hgvsp: ENSP00000463435.1:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1910A>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1961A>G
  hgvsp: ENSP00000225394.3:p.Lys654Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14637T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.404A>G
  hgvsp: ENST00000578670.1:c.404A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1919A>G
  hgvsp: ENSP00000462775.1:p.Lys640Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1961A>G
  hgvsp: ENSP00000464388.1:p.Lys654Arg
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39601
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys663Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

17-27902365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902365
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902365
    reference: chr 17
allele count: 1
allele frequency: 8.27841981522567e-6
allele num: 120796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1899G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14648C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1950G>A
  hgvsp: ENST00000579937.1:c.1950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1950G>A
  hgvsp: ENST00000225394.3:c.1950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.339G>A
  hgvsp: ENST00000578266.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.1977G>A
  hgvsp: ENST00000394869.3:c.1977G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1908G>A
  hgvsp: ENST00000581348.1:c.1908G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.393G>A
  hgvsp: ENSP00000463746.1:p.Ala132Thr
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala132Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

17-27902418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902418
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902418
    reference: chr 17
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.286G>A
  hgvsp: ENSP00000463435.1:p.Gly96Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1897G>A
  hgvsp: ENSP00000464388.1:p.Gly633Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.1924G>A
  hgvsp: ENSP00000378338.3:p.Gly642Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1855G>A
  hgvsp: ENSP00000462775.1:p.Gly619Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14701C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1897G>A
  hgvsp: ENSP00000225394.3:p.Gly633Arg
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1846G>A
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.340G>A
  hgvsp: ENSP00000463746.1:p.Trp114Ter
  variant of: http://identifiers.org/hgnc/4272
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39604
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp114Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

17-27902433-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27902433
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27902433
    reference: chr 17
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000378338
  ensembl transcript: ENST00000394869
  gene symbol: GIT1
  hgvsc: ENST00000394869.3:c.1909C>G
  hgvsp: ENSP00000378338.3:p.Leu637Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000462775
  ensembl transcript: ENST00000581348
  gene symbol: GIT1
  hgvsc: ENST00000581348.1:c.1840C>G
  hgvsp: ENSP00000462775.1:p.Leu614Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463435
  ensembl transcript: ENST00000578266
  gene symbol: GIT1
  hgvsc: ENST00000578266.1:c.271C>G
  hgvsp: ENSP00000463435.1:p.Leu91Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000225394
  ensembl transcript: ENST00000225394
  gene symbol: GIT1
  hgvsc: ENST00000225394.3:c.1882C>G
  hgvsp: ENSP00000225394.3:p.Leu628Val
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264031
  ensembl transcript: ENST00000581474
  gene symbol: RP11-68I3.2
  hgvsc: ENST00000581474.1:n.153+14716G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000463746
  ensembl transcript: ENST00000578670
  gene symbol: GIT1
  hgvsc: ENST00000578670.1:c.325C>G
  hgvsp: ENSP00000463746.1:p.Ala109Gly
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108262
  ensembl transcript: ENST00000473217
  gene symbol: GIT1
  hgvsc: ENST00000473217.1:n.1831C>G
  variant of: http://identifiers.org/hgnc/4272
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108262
  ensembl protein: ENSP00000464388
  ensembl transcript: ENST00000579937
  gene symbol: GIT1
  hgvsc: ENST00000579937.1:c.1882C>G
  hgvsp: ENSP00000464388.1:p.Leu628Val
  variant of: http://identifiers.org/hgnc/4272
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu637Val
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 563
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21879
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3430
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4983
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 1.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2516
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.141552511415525e-3
allele num: 6132
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.194888178913738e-4
allele num: 3130
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.834467120181406e-4
allele num: 3528
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.41367e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

FS
type: SiteQuality
SIO_000300: 1.235e0

QD
type: SiteQuality
SIO_000300: 1.418e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

GenotypeQuality
all individuals: 310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6680
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.666666666666667e-4
allele num: 3750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.787e1

VQSLOD
type: SiteQuality
SIO_000300: -2.747e0

DP
type: SiteQuality
SIO_000300: 6.64756e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

FS
type: SiteQuality
SIO_000300: 3.09e0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 3.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

GenotypeQuality
all individuals: 769
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6251
bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5329
bin: 6.25e1
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GenotypeQuality
all individuals: 732
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.126367785906334e-5
allele num: 31986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.1e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.644e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.288e0

DP
type: SiteQuality
SIO_000300: 6.79492e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.228e-1

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5846
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.736111111111111e-4
allele num: 5760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32514
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.293e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 6.92469e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.09e-2

FS
type: SiteQuality
SIO_000300: 3.222e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5886
bin: 7.5e0
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GenotypeQuality
all individuals: 678
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.545824847250509e-4
allele num: 3928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.09e-2

DP
type: SiteQuality
SIO_000300: 6.92469e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 3.222e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
all individuals: 22206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2918
bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 753
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 714
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.384472316276408e-5
allele num: 41938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.550868486352357e-4
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.17096018735363e-3
allele num: 5978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3768
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.98865e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.122e0

QD
type: SiteQuality
SIO_000300: 1.218e1

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

FS
type: SiteQuality
SIO_000300: 5.611e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

GenotypeQuality
all individuals: 362
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 719
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variant carriers: 0

GenotypeQuality
all individuals: 772
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variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
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variant carriers: 0

GenotypeQuality
all individuals: 2767
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variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
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variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 21096
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.93032711143966e-5
allele num: 43288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.2492e5

GenotypeQuality
all individuals: 730
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 772
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 421
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 780
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variant carriers: 0

GenotypeQuality
all individuals: 18357
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

DP
type: SiteQuality
SIO_000300: 9.2492e5

QD
type: SiteQuality
SIO_000300: 1.062e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

GenotypeQuality
all individuals: 527
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 647
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.187035255008311e-5
allele num: 45724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6928
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.70759e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.036e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.791e0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.677e-1

GenotypeQuality
all individuals: 18077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 557
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24089
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 200
bin: 8.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 8.421052631578948e-4
allele num: 47500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 21
allele frequency: 4.890544946436889e-3
allele num: 4294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.964e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

DP
type: SiteQuality
SIO_000300: 1.004048e6

FS
type: SiteQuality
SIO_000300: 2.309e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

QD
type: SiteQuality
SIO_000300: 1.307e1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

GenotypeQuality
all individuals: 1215
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 7.5e0
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GenotypeQuality
all individuals: 586
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25301
bin: 6.25e1
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GenotypeQuality
all individuals: 539
bin: 1.75e1
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GenotypeQuality
all individuals: 217
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GenotypeQuality
all individuals: 457
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.278118609406953e-4
allele num: 7824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e0

DP
type: SiteQuality
SIO_000300: 1.027213e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.345e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.76e-1

QD
type: SiteQuality
SIO_000300: 1.932e1

GenotypeQuality
all individuals: 2088
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49220
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.652892561983471e-4
allele num: 6050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.122e1

FS
type: SiteQuality
SIO_000300: 3.358e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

DP
type: SiteQuality
SIO_000300: 1.037764e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 63

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 908
bin: 8.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 9.749303621169916e-4
allele num: 7180
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.519756838905775e-3
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 6.500776481635307e-4
allele num: 55378
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.278777731268313e-4
allele num: 9556
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.225790634959549e-3
allele num: 8158
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.196744853997128e-4
allele num: 8356
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.159521e6

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

GenotypeQuality
all individuals: 546
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 698
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variant carriers: 0

GenotypeQuality
all individuals: 9902
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.771479185119575e-5
allele num: 56450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5086
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.19e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.183359e6

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

GenotypeQuality
all individuals: 1062
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
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variant carriers: 0

GenotypeQuality
all individuals: 1140
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4908
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 568
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GenotypeQuality
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GenotypeQuality
all individuals: 371
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 363
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variant carriers: 0

GenotypeQuality
all individuals: 32343
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.004811547714515e-4
allele num: 9976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.243e-1

QD
type: SiteQuality
SIO_000300: 8.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.973e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

DP
type: SiteQuality
SIO_000300: 1.197206e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 504
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variant carriers: 0

GenotypeQuality
all individuals: 2098
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variant carriers: 0

GenotypeQuality
all individuals: 195
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GenotypeQuality
all individuals: 34560
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 513
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GenotypeQuality
all individuals: 455
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GenotypeQuality
all individuals: 819
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GenotypeQuality
all individuals: 5487
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variant carriers: 0

GenotypeQuality
all individuals: 548
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variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.677120719149364e-5
allele num: 59626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.337e1

DP
type: SiteQuality
SIO_000300: 1.25588e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeQuality
all individuals: 1765
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variant carriers: 0

GenotypeQuality
all individuals: 480
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variant carriers: 0

GenotypeQuality
all individuals: 1613
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 906
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 536
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variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.63901018922853e-4
allele num: 5496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

FS
type: SiteQuality
SIO_000300: 1.716e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e-1

QD
type: SiteQuality
SIO_000300: 1.572e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.26538e6

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 396
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variant carriers: 0

GenotypeQuality
all individuals: 5653
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 370
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GenotypeQuality
all individuals: 1913
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variant carriers: 0

GenotypeQuality
all individuals: 565
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variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61298
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.218323586744639e-4
allele num: 8208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.143e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: -4.302e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

QD
type: SiteQuality
SIO_000300: 2.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

DP
type: SiteQuality
SIO_000300: 1.295128e6

GenotypeQuality
all individuals: 979
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2411
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 331
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GenotypeQuality
all individuals: 6003
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.741553465691397e-4
allele num: 5742
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.052631578947368e-4
allele num: 9500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.482e1

FS
type: SiteQuality
SIO_000300: 2.935e0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.214e0

DP
type: SiteQuality
SIO_000300: 1.311207e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.746e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
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GenotypeQuality
all individuals: 2619
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GenotypeQuality
all individuals: 311
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GenotypeQuality
all individuals: 356
bin: 1.75e1
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GenotypeQuality
all individuals: 707
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GenotypeQuality
all individuals: 6378
bin: 6.75e1
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GenotypeQuality
all individuals: 1245
bin: 9.75e1
variant carriers: 173

GenotypeQuality
all individuals: 2136
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GenotypeQuality
all individuals: 1788
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.769911504424779e-4
allele num: 11300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.129257283545343e-4
allele num: 9748
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.221932114882507e-3
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 61
allele frequency: 1.015651015651016e-2
allele num: 6006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 104
allele frequency: 1.653575857792476e-3
allele num: 62894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.344029e6

GenotypeQuality
all individuals: 416
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.007455168245013e-4
allele num: 9926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62974
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.347753e6

QD
type: SiteQuality
SIO_000300: 1.075e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.001602564102564e-4
allele num: 9984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.370913e6

QD
type: SiteQuality
SIO_000300: 1.466e1

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.495e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2945
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6745
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558360604643914e-5
allele num: 64170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.421e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.386345e6

QD
type: SiteQuality
SIO_000300: 7.94e0

FS
type: SiteQuality
SIO_000300: 3.039e0

MQ
type: SiteQuality
SIO_000300: 5.618e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
all individuals: 3607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38121
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variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.770391159445712e-5
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 3.979e0

DP
type: SiteQuality
SIO_000300: 1.401692e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

QD
type: SiteQuality
SIO_000300: 3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.377e0

GenotypeQuality
all individuals: 202
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 842
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GenotypeQuality
all individuals: 2424
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.750390015600624e-5
allele num: 10256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.410962e6

FS
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

QD
type: SiteQuality
SIO_000300: 1.329e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1414
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539835545563734e-5
allele num: 64942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12042
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.412525e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.173e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: -1.145e0

FS
type: SiteQuality
SIO_000300: 2.909e0

QD
type: SiteQuality
SIO_000300: 1.044e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.085e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530596626565035e-5
allele num: 65334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.757e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.91e-1

QD
type: SiteQuality
SIO_000300: 1.983e1

FS
type: SiteQuality
SIO_000300: 7.11e-1

DP
type: SiteQuality
SIO_000300: 1.42375e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.244e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527277170260859e-5
allele num: 65476
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 6.345e0

DP
type: SiteQuality
SIO_000300: 1.428623e6

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 1.124e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.903600464576074e-4
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.526e1

DP
type: SiteQuality
SIO_000300: 1.429713e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 1434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52545992616774e-5
allele num: 65554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 1.429658e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

FS
type: SiteQuality
SIO_000300: 5.819e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65554
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e0

QD
type: SiteQuality
SIO_000300: 8.18e0

FS
type: SiteQuality
SIO_000300: 6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.011e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

DP
type: SiteQuality
SIO_000300: 1.428426e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.253267237494367e-4
allele num: 13314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.407e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

FS
type: SiteQuality
SIO_000300: 1.319e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

DP
type: SiteQuality
SIO_000300: 1.42677e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13184
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.697439875872769e-5
allele num: 10312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.054834275240568e-5
allele num: 65470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

FS
type: SiteQuality
SIO_000300: 8.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.23e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.420387e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527743827914935e-5
allele num: 65456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

DP
type: SiteQuality
SIO_000300: 1.418591e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 45

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 46
allele frequency: 3.527066400858764e-3
allele num: 13042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.415641e6

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.745e0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

QD
type: SiteQuality
SIO_000300: 1.218e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

FS
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.413602e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65382
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.682851874615857e-5
allele num: 13016
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.413602e6

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65354
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.443e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.356e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.411982e6

QD
type: SiteQuality
SIO_000300: 1.178e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.802e1

FS
type: SiteQuality
SIO_000300: 2.691e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 305
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6730
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.25e1
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GenotypeQuality
all individuals: 916
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
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GenotypeQuality
all individuals: 1474
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531065315246348e-5
allele num: 65314
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.477e0

VQSLOD
type: SiteQuality
SIO_000300: -2.25e0

QD
type: SiteQuality
SIO_000300: 1.29e1

DP
type: SiteQuality
SIO_000300: 1.411244e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.269e0

FS
type: SiteQuality
SIO_000300: 2.0188e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.453e1

GenotypeQuality
all individuals: 2398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 9.75e1
variant carriers: 404

GenotypeQuality
all individuals: 836
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 57
allele frequency: 8.618082854550952e-3
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 331
allele frequency: 5.070310345884011e-3
allele num: 65282
num of homozygotes: 1

African
type: Population
allele count: 8
allele frequency: 7.774538386783285e-4
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.46860908775581e-4
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 8.13953488372093e-3
allele num: 860
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 1.778e0

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.409e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.441981e6

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.373e1

GenotypeQuality
all individuals: 727
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 836
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
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variant carriers: 3

GenotypeQuality
all individuals: 2987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.344116268166901e-4
allele num: 12798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65230
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.439078e6

FS
type: SiteQuality
SIO_000300: 1.828e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.574e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1832
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variant carriers: 1

GenotypeQuality
all individuals: 36304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
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variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536995481233285e-5
allele num: 65062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 7.694e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.078e0

QD
type: SiteQuality
SIO_000300: 1.25e1

MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

DP
type: SiteQuality
SIO_000300: 1.430793e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeQuality
all individuals: 912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
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variant carriers: 0

GenotypeQuality
all individuals: 2396
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variant carriers: 0

GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 328
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variant carriers: 0

GenotypeQuality
all individuals: 2625
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variant carriers: 0

GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 1833
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6591
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.735202492211838e-5
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65010
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.626e0

FS
type: SiteQuality
SIO_000300: 1.501e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.008e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.429475e6

GenotypeQuality
all individuals: 319
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
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variant carriers: 0

GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 472
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GenotypeQuality
all individuals: 630
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GenotypeQuality
all individuals: 912
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variant carriers: 0

GenotypeQuality
all individuals: 805
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GenotypeQuality
all individuals: 2989
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
all individuals: 2750
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variant carriers: 0

GenotypeQuality
all individuals: 36277
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.616094783812895e-5
allele num: 64990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

DP
type: SiteQuality
SIO_000300: 1.429474e6

FS
type: SiteQuality
SIO_000300: 4.112e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.115e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.243e1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 36277
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
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GenotypeQuality
all individuals: 912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
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variant carriers: 0

GenotypeQuality
all individuals: 630
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GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 1839
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GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.115e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 4.112e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 1.429474e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

GenotypeQuality
all individuals: 839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2397
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variant carriers: 0

GenotypeQuality
all individuals: 2985
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GenotypeQuality
all individuals: 1844
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 375
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GenotypeQuality
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GenotypeQuality
all individuals: 6577
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.750390015600624e-5
allele num: 10256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12054
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.524e0

VQSLOD
type: SiteQuality
SIO_000300: -1.54e0

QD
type: SiteQuality
SIO_000300: 1.303e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.954e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.363e0

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

DP
type: SiteQuality
SIO_000300: 1.42776e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 839
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 1846
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GenotypeQuality
all individuals: 541
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35956
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.752291788570315e-5
allele num: 10254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 4.91e0

MQ
type: SiteQuality
SIO_000300: 5.995e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.427671e6

QD
type: SiteQuality
SIO_000300: 1.372e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.971e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2115
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variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.35421888053467e-5
allele num: 11970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.076e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 6.767e0

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

DP
type: SiteQuality
SIO_000300: 1.428025e6

GenotypeQuality
all individuals: 148
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2424
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GenotypeQuality
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variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540357362908195e-5
allele num: 64920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.676e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.344e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.428435e6

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

FS
type: SiteQuality
SIO_000300: 6.504e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.78e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 803
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546072974644403e-5
allele num: 64680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12566
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.618715083798883e-4
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 50
allele frequency: 4.936808846761453e-3
allele num: 10128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

FS
type: SiteQuality
SIO_000300: 1.291e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

DP
type: SiteQuality
SIO_000300: 3.10162e6

QD
type: SiteQuality
SIO_000300: 1.391e1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 571
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GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542495758136665e-5
allele num: 64830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 2.471e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.381e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

DP
type: SiteQuality
SIO_000300: 3.101693e6

GenotypeQuality
all individuals: 1160
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39609
bin: 9.75e1
variant carriers: 8

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.486750348675035e-4
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.625346901017576e-5
allele num: 64860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.568e0

QD
type: SiteQuality
SIO_000300: 1.146e1

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 3.103813e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1984
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541782300339192e-5
allele num: 64860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13260
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 844
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
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Latino
type: Population
allele count: 0
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African
type: Population
allele count: 2
allele frequency: 1.974723538704581e-4
allele num: 10128
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
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South Asian
type: Population
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

DP
type: SiteQuality
SIO_000300: 3.104434e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.852216748768474e-5
allele num: 10150
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
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allele num: 8588
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.539930395146139e-5
allele num: 64938
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 13516
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Other
type: Population
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allele num: 848
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1939
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GenotypeQuality
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GenotypeQuality
all individuals: 197
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GenotypeQuality
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GenotypeQuality
all individuals: 39603
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GenotypeQuality
all individuals: 216
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2466
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.419498441905327e-5
allele num: 13478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 1.479e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

DP
type: SiteQuality
SIO_000300: 3.107095e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.17e1

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39603
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1988
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461538e-5
allele num: 65000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13648
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.298e1

DP
type: SiteQuality
SIO_000300: 3.109118e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.253e0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5284
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39604
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1988
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.237984944991314e-5
allele num: 13816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536759282026063e-5
allele num: 65072
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.111265e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

VQSLOD
type: SiteQuality
SIO_000300: -6.273e-1

FS
type: SiteQuality
SIO_000300: 2.515e0

QD
type: SiteQuality
SIO_000300: 1.077e1

MQRankSum
type: SiteQuality
SIO_000300: -1.199e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.662e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

GenotypeQuality
all individuals: 838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39604
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536334306345061e-5
allele num: 65090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

FS
type: SiteQuality
SIO_000300: 8.827999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.015e0

DP
type: SiteQuality
SIO_000300: 3.111828e6

VQSLOD
type: SiteQuality
SIO_000300: -2.633e0

QD
type: SiteQuality
SIO_000300: 3.41e0

GenotypeQuality
all individuals: 675
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39603
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2350
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.599110838571209e-5
allele num: 65230
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.227e1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

DP
type: SiteQuality
SIO_000300: 3.118861e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.206e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39602
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.958863858961802e-4
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.285e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 3.127234e6

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

GenotypeQuality
all individuals: 6741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39601
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526391305675123e-5
allele num: 65514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 3.130265e6

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

FS
type: SiteQuality
SIO_000300: 3.188e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

QD
type: SiteQuality
SIO_000300: 1.082e1

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39602
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.000266702226964e-4
allele num: 14998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 3.137054e6

QD
type: SiteQuality
SIO_000300: 1.118e1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

GenotypeQuality
all individuals: 292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39601
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 2142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7427
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521653123953863e-5
allele num: 65718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.27e0

VQSLOD
type: SiteQuality
SIO_000300: -2.715e0

FS
type: SiteQuality
SIO_000300: 1.532e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

DP
type: SiteQuality
SIO_000300: 3.14043e6

GenotypeQuality
all individuals: 880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39600
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 8172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15456
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.585872071853381e-5
allele num: 65912
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10240
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.184e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

FS
type: SiteQuality
SIO_000300: 4.113e0

VQSLOD
type: SiteQuality
SIO_000300: 9.62e-1

DP
type: SiteQuality
SIO_000300: 3.14912e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.704e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66272
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.167117e6

MQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.584e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 8.081e0

MQ
type: SiteQuality
SIO_000300: 5.729e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 1.515e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 3.169318e6

VQSLOD
type: SiteQuality
SIO_000300: -5.538999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.913e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.469e0

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.119202056051891e-5
allele num: 16342
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.7e0

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

DP
type: SiteQuality
SIO_000300: 3.169276e6

VQSLOD
type: SiteQuality
SIO_000300: -2.096e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

FS
type: SiteQuality
SIO_000300: 2.986e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 1.662e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8634
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.099048548426445e-5
allele num: 16396
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

DP
type: SiteQuality
SIO_000300: 3.171429e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

QD
type: SiteQuality
SIO_000300: 1.443e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.283e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
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allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

FS
type: SiteQuality
SIO_000300: 2.216e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.174462e6