17-8363305-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363305
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363305
    reference: chr 17
allele count: 8
allele frequency: 6.759040216289287e-5
allele num: 118360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5100C>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7164C>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.793-22C>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.793-22C>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.266-22C>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.350-22C>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.793-22C>G
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

17-8363306-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363306
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363306
    reference: chr 17
allele count: 1
allele frequency: 8.436113313874031e-6
allele num: 118538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.793-21A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7163A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5101A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.266-21A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.793-21A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.350-21A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.793-21A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

17-8363307-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363307
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363307
    reference: chr 17
allele count: 5
allele frequency: 4.213790894840634e-5
allele num: 118658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7162T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.793-20T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5102T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.266-20T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.350-20T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.793-20T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.793-20T>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

17-8363315-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363315
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363315
    reference: chr 17
allele count: 30
allele frequency: 2.511637252603731e-4
allele num: 119444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.266-12T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.350-12T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.793-12T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5110T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.793-12T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7154T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.793-12T>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23584
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

17-8363337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363337
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363337
    reference: chr 17
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.803C>T
  hgvsp: ENSP00000299734.7:p.Ser268Phe
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.803C>T
  hgvsp: ENSP00000384963.3:p.Ser268Phe
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5132C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.803C>T
  hgvsp: ENSP00000333982.7:p.Ser268Phe
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7132C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.360C>T
  hgvsp: ENSP00000464441.1:p.Ser121Phe
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.276C>T
  hgvsp: ENSP00000464634.1:p.Ser93Phe
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser268Phe
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-8363354-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363354
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363354
    reference: chr 17
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.293A>G
  hgvsp: ENSP00000464634.1:p.Arg99Gly
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7115A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5149A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.820A>G
  hgvsp: ENSP00000333982.7:p.Arg274Gly
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.820A>G
  hgvsp: ENSP00000384963.3:p.Arg274Gly
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.377A>G
  hgvsp: ENSP00000464441.1:p.Arg127Gly
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.820A>G
  hgvsp: ENSP00000299734.7:p.Arg274Gly
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23569
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg274Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-8363380-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363380
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363380
    reference: chr 17
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.403A>G
  hgvsp: ENST00000582277.1:c.403A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.319A>G
  hgvsp: ENST00000581679.1:c.319A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.846A>G
  hgvsp: ENST00000334527.7:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7089A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5175A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.846A>G
  hgvsp: ENST00000402554.3:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.846A>G
  hgvsp: ENST00000299734.7:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23567
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4395
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser282Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum

17-8363382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363382
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363382
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.405G>A
  hgvsp: ENSP00000464441.1:p.Arg136Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5177G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.848G>A
  hgvsp: ENSP00000299734.7:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7087G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.848G>A
  hgvsp: ENSP00000333982.7:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.321G>A
  hgvsp: ENSP00000464634.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.848G>A
  hgvsp: ENSP00000384963.3:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23567
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg283Gln
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

17-8363391-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363391
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363391
    reference: chr 17
allele count: 5
allele frequency: 4.118887570844866e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.330A>G
  hgvsp: ENSP00000464634.1:p.Tyr111Cys
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7078A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.857A>G
  hgvsp: ENSP00000299734.7:p.Tyr286Cys
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.414A>G
  hgvsp: ENSP00000464441.1:p.Tyr139Cys
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.857A>G
  hgvsp: ENSP00000333982.7:p.Tyr286Cys
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5186A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.857A>G
  hgvsp: ENSP00000384963.3:p.Tyr286Cys
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23568
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Tyr286Cys
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-8363393-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363393
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363393
    reference: chr 17
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7076A>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.416A>C
  hgvsp: ENSP00000464441.1:p.Ile140Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5188A>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.859A>C
  hgvsp: ENSP00000299734.7:p.Ile287Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.859A>C
  hgvsp: ENSP00000333982.7:p.Ile287Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.332A>C
  hgvsp: ENSP00000464634.1:p.Ile112Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.859A>C
  hgvsp: ENSP00000384963.3:p.Ile287Leu
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile287Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-8363393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363393
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363393
    reference: chr 17
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.416A>G
  hgvsp: ENSP00000464441.1:p.Ile140Val
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.859A>G
  hgvsp: ENSP00000333982.7:p.Ile287Val
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5188A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.859A>G
  hgvsp: ENSP00000384963.3:p.Ile287Val
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7076A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.332A>G
  hgvsp: ENSP00000464634.1:p.Ile112Val
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.859A>G
  hgvsp: ENSP00000299734.7:p.Ile287Val
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14601
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile287Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

17-8363397-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363397
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363397
    reference: chr 17
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.863C>T
  hgvsp: ENSP00000333982.7:p.Ser288Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.420C>T
  hgvsp: ENSP00000464441.1:p.Ser141Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7072C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.863C>T
  hgvsp: ENSP00000384963.3:p.Ser288Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.863C>T
  hgvsp: ENSP00000299734.7:p.Ser288Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.336C>T
  hgvsp: ENSP00000464634.1:p.Ser113Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5192C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser288Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

17-8363402-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363402
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363402
    reference: chr 17
allele count: 29
allele frequency: 2.388876074994234e-4
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.425A>T
  hgvsp: ENSP00000464441.1:p.Asn143Tyr
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7067A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.868A>T
  hgvsp: ENSP00000299734.7:p.Asn290Tyr
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.868A>T
  hgvsp: ENSP00000333982.7:p.Asn290Tyr
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.341A>T
  hgvsp: ENSP00000464634.1:p.Asn115Tyr
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5197A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.868A>T
  hgvsp: ENSP00000384963.3:p.Asn290Tyr
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn290Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

17-8363430-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363430
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363430
    reference: chr 17
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.453A>G
  hgvsp: ENSP00000464441.1:p.Asn152Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.896A>G
  hgvsp: ENSP00000333982.7:p.Asn299Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7039A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.896A>G
  hgvsp: ENSP00000299734.7:p.Asn299Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.896A>G
  hgvsp: ENSP00000384963.3:p.Asn299Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.369A>G
  hgvsp: ENSP00000464634.1:p.Asn124Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5225A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23549
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn299Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-8363432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363432
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363432
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.455G>A
  hgvsp: ENSP00000464441.1:p.Gly153Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.371G>A
  hgvsp: ENSP00000464634.1:p.Gly125Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.898G>A
  hgvsp: ENSP00000384963.3:p.Gly300Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7037G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5227G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.898G>A
  hgvsp: ENSP00000333982.7:p.Gly300Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.898G>A
  hgvsp: ENSP00000299734.7:p.Gly300Ser
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23548
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly300Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-8363433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363433
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363433
    reference: chr 17
allele count: 122
allele frequency: 1.00507480392803e-3
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.372G>A
  hgvsp: ENSP00000464634.1:p.Gly125Asp
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.456G>A
  hgvsp: ENSP00000464441.1:p.Gly153Asp
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.899G>A
  hgvsp: ENSP00000384963.3:p.Gly300Asp
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5228G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.899G>A
  hgvsp: ENSP00000333982.7:p.Gly300Asp
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.899G>A
  hgvsp: ENSP00000299734.7:p.Gly300Asp
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7036G>A
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 9.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly300Asp
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff

17-8363434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363434
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363434
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.373C>T
  hgvsp: ENST00000581679.1:c.373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5229C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.900C>T
  hgvsp: ENST00000334527.7:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.900C>T
  hgvsp: ENST00000402554.3:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.457C>T
  hgvsp: ENST00000582277.1:c.457C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7035C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.900C>T
  hgvsp: ENST00000299734.7:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14616
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly300Gly
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

17-8363437-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363437
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363437
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.376A>T
  hgvsp: ENST00000581679.1:c.376A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.460A>T
  hgvsp: ENST00000582277.1:c.460A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.903A>T
  hgvsp: ENST00000299734.7:c.903A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7032A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.903A>T
  hgvsp: ENST00000334527.7:c.903A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.903A>T
  hgvsp: ENST00000402554.3:c.903A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5232A>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr301Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-8363448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363448
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363448
    reference: chr 17
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5243G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.914G>A
  hgvsp: ENSP00000333982.7:p.Arg305Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.387G>A
  hgvsp: ENSP00000464634.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.471G>A
  hgvsp: ENSP00000464441.1:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7021G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.914G>A
  hgvsp: ENSP00000384963.3:p.Arg305Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.914G>A
  hgvsp: ENSP00000299734.7:p.Arg305Gln
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg305Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

17-8363448-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363448
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363448
    reference: chr 17
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.914G>C
  hgvsp: ENSP00000333982.7:p.Arg305Pro
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.914G>C
  hgvsp: ENSP00000384963.3:p.Arg305Pro
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.914G>C
  hgvsp: ENSP00000299734.7:p.Arg305Pro
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.471G>C
  hgvsp: ENSP00000464441.1:p.Arg158Pro
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.387G>C
  hgvsp: ENSP00000464634.1:p.Arg130Pro
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5243G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7021G>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg305Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-8363448-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363448
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363448
    reference: chr 17
allele count: 4
allele frequency: 3.296304842271814e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5243G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7021G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.387G>T
  hgvsp: ENSP00000464634.1:p.Arg130Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.471G>T
  hgvsp: ENSP00000464441.1:p.Arg158Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.914G>T
  hgvsp: ENSP00000384963.3:p.Arg305Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.914G>T
  hgvsp: ENSP00000333982.7:p.Arg305Leu
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.914G>T
  hgvsp: ENSP00000299734.7:p.Arg305Leu
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg305Leu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

17-8363460-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363460
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363460
    reference: chr 17
allele count: 9
allele frequency: 7.423047738444789e-5
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.926C>T
  hgvsp: ENSP00000333982.7:p.Thr309Ile
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.926C>T
  hgvsp: ENSP00000299734.7:p.Thr309Ile
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.399C>T
  hgvsp: ENSP00000464634.1:p.Thr134Ile
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.926C>T
  hgvsp: ENSP00000384963.3:p.Thr309Ile
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5255C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.483C>T
  hgvsp: ENSP00000464441.1:p.Thr162Ile
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7009C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23498
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr309Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-8363461-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363461
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363461
    reference: chr 17
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.927A>G
  hgvsp: ENST00000299734.7:c.927A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.927A>G
  hgvsp: ENST00000334527.7:c.927A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.400A>G
  hgvsp: ENST00000581679.1:c.400A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5256A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.927A>G
  hgvsp: ENST00000402554.3:c.927A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7008A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.484A>G
  hgvsp: ENST00000582277.1:c.484A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4859
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23490
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr309Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-8363464-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363464
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363464
    reference: chr 17
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.403T>C
  hgvsp: ENST00000581679.1:c.403T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.487T>C
  hgvsp: ENST00000582277.1:c.487T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.930T>C
  hgvsp: ENST00000299734.7:c.930T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.930T>C
  hgvsp: ENST00000402554.3:c.930T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.930T>C
  hgvsp: ENST00000334527.7:c.930T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5259T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7005T>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23491
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4397
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser310Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-8363466-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363466
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363466
    reference: chr 17
allele count: 1
allele frequency: 8.254639107178234e-6
allele num: 121144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.932T>C
  hgvsp: ENSP00000384963.3:p.Phe311Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.932T>C
  hgvsp: ENSP00000333982.7:p.Phe311Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.932T>C
  hgvsp: ENSP00000299734.7:p.Phe311Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5261T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.405T>C
  hgvsp: ENSP00000464634.1:p.Phe136Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.489T>C
  hgvsp: ENSP00000464441.1:p.Phe164Ser
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-7003T>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe311Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-8363470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363470
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363470
    reference: chr 17
allele count: 2
allele frequency: 1.652237129072764e-5
allele num: 121048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.409C>T
  hgvsp: ENST00000581679.1:c.409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.936C>T
  hgvsp: ENST00000299734.7:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5265C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.493C>T
  hgvsp: ENST00000582277.1:c.493C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.936C>T
  hgvsp: ENST00000334527.7:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.936C>T
  hgvsp: ENST00000402554.3:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6999C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe312Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

17-8363471-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363471
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363471
    reference: chr 17
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.937G>A
  hgvsp: ENSP00000333982.7:p.Asp313Asn
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.937G>A
  hgvsp: ENSP00000299734.7:p.Asp313Asn
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.494G>A
  hgvsp: ENSP00000464441.1:p.Asp166Asn
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.937G>A
  hgvsp: ENSP00000384963.3:p.Asp313Asn
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6998G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5266G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.410G>A
  hgvsp: ENSP00000464634.1:p.Asp138Asn
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23487
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4831
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp313Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/17-8363474-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363474
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363474
    reference: chr 17
allele count: 7
allele frequency: 5.790387955993052e-5
allele num: 120890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.940A>C
  hgvsp: ENSP00000384963.3:p.Lys314Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5269A>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.413A>C
  hgvsp: ENSP00000464634.1:p.Lys139Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6995A>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.940A>C
  hgvsp: ENSP00000333982.7:p.Lys314Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.497A>C
  hgvsp: ENSP00000464441.1:p.Lys167Gln
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.940A>C
  hgvsp: ENSP00000299734.7:p.Lys314Gln
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23488
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys314Gln
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

17-8363475-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363475
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363475
    reference: chr 17
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.941A>G
  hgvsp: ENSP00000333982.7:p.Lys314Arg
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5270A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.498A>G
  hgvsp: ENSP00000464441.1:p.Lys167Arg
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6994A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.414A>G
  hgvsp: ENSP00000464634.1:p.Lys139Arg
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.941A>G
  hgvsp: ENSP00000384963.3:p.Lys314Arg
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.941A>G
  hgvsp: ENSP00000299734.7:p.Lys314Arg
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys314Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-8363504-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363504
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363504
    reference: chr 17
allele count: 1
allele frequency: 8.341396683460679e-6
allele num: 119884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+26A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+26A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5299A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6965A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.944+26A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.501+26A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+26A>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23478
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-8363515-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363515
    reference: chr 17
allele count: 3
allele frequency: 2.511553144464537e-5
allele num: 119448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5310T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.944+37T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+37T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.501+37T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+37T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+37T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6954T>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8737
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum

17-8363516-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363516
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363516
    reference: chr 17
allele count: 2
allele frequency: 1.674565031733007e-5
allele num: 119434
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+38A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.944+38A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6953A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.501+38A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+38A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5311A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+38A>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4421
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 4382
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

17-8363526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363526
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363526
    reference: chr 17
allele count: 4
allele frequency: 3.371373666200293e-5
allele num: 118646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.501+48C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.944+48C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+48C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+48C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5321C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6943C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+48C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4008
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

17-8363529-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8363529
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8363528
    reference: chr 17
allele count: 34
allele frequency: 2.867456060452721e-4
allele num: 118572
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.944+53delT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+53delT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+53delT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.792+5326delT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.501+53delT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+53delT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-6938delT
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7933
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: GT
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-8364554-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8364554
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8364554
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 4
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+1076C>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-5694C>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+1076C>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-5915C>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.944+1076C>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464441
  ensembl transcript: ENST00000582277
  gene symbol: NDEL1
  hgvsc: ENST00000582277.1:c.*12C>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+1076C>A
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

17-8366598-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366598
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366598
    reference: chr 17
allele count: 1
allele frequency: 8.310341388824253e-6
allele num: 120332
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3120T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-40T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3120T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.504T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3120T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3650T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3871T>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17631
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-8366600-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366600
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366600
    reference: chr 17
allele count: 3
allele frequency: 2.495674164781046e-5
allele num: 120208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3648C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3869C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.506C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3122C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3122C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-38C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3122C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12320
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14345
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4015
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-8366601-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366601
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366601
    reference: chr 17
allele count: 1
allele frequency: 8.313934153641504e-6
allele num: 120280
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3123G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3123G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-37G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3123G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.507G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3868G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3647G>A
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17633
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6524
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

17-8366603-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366603
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366603
    reference: chr 17
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3645A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.509A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3125A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3125A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3125A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3866A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-35A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-8366606-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366606
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366606
    reference: chr 17
allele count: 16
allele frequency: 1.328793289593888e-4
allele num: 120410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3128A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3863A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3128A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.512A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3642A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3128A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-32A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15774
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

17-8366612-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366612
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366610
    reference: chr 17
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3135_944+3136delAA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3856_172-3855delAA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-25_945-24delAA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3135_417+3136delAA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.519_520delAA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3635_793-3634delAA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3135_944+3136delAA
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17636
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: TAA
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

17-8366613-AAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366613
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366611
    reference: chr 17
allele count: 4
allele frequency: 3.315484972564362e-5
allele num: 120646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3138_417+3139delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3138_944+3139delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.522_523delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3138_944+3139delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-22_945-21delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3632_793-3631delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3853_172-3852delAT
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16588
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17639
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AAT
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-8366615-T-TTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366615
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366617
    reference: chr 17
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: TTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3137_944+3138insTA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.521_522insTA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3137_944+3138insTA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3854_172-3853insTA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-23_945-22insTA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3137_417+3138insTA
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3633_793-3632insTA
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17637
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-8366621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366621
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366621
    reference: chr 17
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3848C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3627C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3143C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-17C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.527C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3143C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3143C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17637
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

17-8366623-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366623
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366623
    reference: chr 17
allele count: 2
allele frequency: 1.654095540558423e-5
allele num: 120912
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3145C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3145C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-15C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3846C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3145C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.529C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3625C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17658
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-8366623-CCTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366623
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366619
    reference: chr 17
allele count: 28
allele frequency: 2.315733756781792e-4
allele num: 120912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-10_945-7delCTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3150_944+3153delCTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3150_417+3153delCTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3620_793-3617delCTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3150_944+3153delCTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.534_537delCTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3841_172-3838delCTTT
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17658
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: CCTTT
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-8366624-CTTTCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366624
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366619
    reference: chr 17
allele count: 2
allele frequency: 1.654506047219603e-5
allele num: 120882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.534_538delCTTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3150_944+3154delCTTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3150_944+3154delCTTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3841_172-3837delCTTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3620_793-3616delCTTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3150_417+3154delCTTTT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-10_945-6delCTTTT
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: CTTTCT
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

17-8366626-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366626
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366626
    reference: chr 17
allele count: 1
allele frequency: 8.268152729317216e-6
allele num: 120946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3148T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3622T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3148T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-12T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3148T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.532T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3843T>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-8366628-CTTTTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366628
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366623
    reference: chr 17
allele count: 1
allele frequency: 8.26801600687899e-6
allele num: 120948
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3153_944+3157delTTATT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3617_793-3613delTTATT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3838_172-3834delTTATT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.537_541delTTATT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-7_945-3delTTATT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3153_944+3157delTTATT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3153_417+3157delTTATT
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17630
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 7.25e1
  variant carriers: 0
hgvs: c.945-7_945-3delTTATT
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: CTTTTA
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-8366633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366633
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366633
    reference: chr 17
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3155A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3836A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3615A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.539A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.945-5A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3155A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3155A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: c.945-5A>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP

17-8366643-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366643
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366643
    reference: chr 17
allele count: 2
allele frequency: 1.65000165000165e-5
allele num: 121212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.950A>G
  hgvsp: ENSP00000384963.3:p.Glu317Gly
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.549A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3165A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3165A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3165A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3605A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3826A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu317Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-8366647-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366647
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366647
    reference: chr 17
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3822A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.553A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3601A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.954A>G
  hgvsp: ENST00000402554.3:c.954A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3169A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3169A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3169A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17642
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys318Lys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

17-8366648-GTCATA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366648
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366643
    reference: chr 17
allele count: 2
allele frequency: 1.649756660892518e-5
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3172_944+3176delCATAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3172_417+3176delCATAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3172_944+3176delCATAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.957_961delCATAT
  hgvsp: ENSP00000384963.3:p.Ile320SerfsTer37
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3819_172-3815delCATAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3598_793-3594delCATAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.556_560delCATAT
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile320SerfsTer37
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: GTCATA
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

17-8366650-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366650
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366648
    reference: chr 17
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3595_793-3594delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3175_944+3176delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.559_560delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.960_961delAT
  hgvsp: ENSP00000384963.3:p.Phe321SerfsTer37
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3175_944+3176delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3816_172-3815delAT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3175_417+3176delAT
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6979
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe321SerfsTer37
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: CAT
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

17-8366651-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366651
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366651
    reference: chr 17
allele count: 9
allele frequency: 7.423537563100069e-5
allele num: 121236
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3173A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.557A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.958A>G
  hgvsp: ENSP00000384963.3:p.Ile320Val
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3597A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3173A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3818A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3173A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17648
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 6985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile320Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-8366653-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366653
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366653
    reference: chr 17
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.960A>G
  hgvsp: ENSP00000384963.3:p.Ile320Met
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.559A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3816A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3175A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3175A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3175A>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3595A>G
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17643
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile320Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

17-8366659-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366659
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366659
    reference: chr 17
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3810C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3181C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3181C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.966C>T
  hgvsp: ENST00000402554.3:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3181C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3589C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.565C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17641
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro322Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-8366661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366661
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366661
    reference: chr 17
allele count: 4
allele frequency: 3.299077907724791e-5
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.968C>T
  hgvsp: ENSP00000384963.3:p.Thr323Met
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.567C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3183C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3183C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3183C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3587C>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3808C>T
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6982
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17644
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr323Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-8366662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366662
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366662
    reference: chr 17
allele count: 29
allele frequency: 2.391831483100473e-4
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3807G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3184G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.568G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3184G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.969G>A
  hgvsp: ENST00000402554.3:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3586G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3184G>A
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6979
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr323Thr
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-8366687-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366687
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366687
    reference: chr 17
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3561T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3209T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+15T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3209T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3782T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3209T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+15T>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

17-8366692-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366692
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366692
    reference: chr 17
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+20G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3214G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3214G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+20G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3777G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3214G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3556G>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17640
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

17-8366692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366692
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366692
    reference: chr 17
allele count: 4
allele frequency: 3.300820253833077e-5
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3214G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+20G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3777G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3556G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+20G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3214G>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3214G>A
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

17-8366704-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366704
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366704
    reference: chr 17
allele count: 6
allele frequency: 4.953764861294584e-5
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3226A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3226A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3226A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3765A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+32A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3544A>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+32A>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13696
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17645
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-8366706-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366706
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366706
    reference: chr 17
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3542T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3763T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+34T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3228T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3228T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+34T>G
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3228T>G
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17640
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-8366708-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366708
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366708
    reference: chr 17
allele count: 6
allele frequency: 4.954337522500949e-5
allele num: 121106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3761T>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+36T>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3230T>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3230T>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3540T>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+36T>A
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3230T>A
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6656
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17645
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

17-8366721-G-GTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366721
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366724
    reference: chr 17
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: GTGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3244_944+3246dupTGT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+50_578+52dupTGT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+50_979+52dupTGT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3526_793-3524dupTGT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3244_417+3246dupTGT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3747_172-3745dupTGT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3244_944+3246dupTGT
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17640
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

17-8366721-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366721
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366721
    reference: chr 17
allele count: 4
allele frequency: 3.308464706952739e-5
allele num: 120902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+49G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3243G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3243G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+49G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3243G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3748G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3527G>T
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-8366723-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366723
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366723
    reference: chr 17
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+51G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+51G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3245G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3245G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3746G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3525G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3245G>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17634
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-8366724-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8366724
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8366724
    reference: chr 17
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+3246T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.578+52T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+3246T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-3745T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.944+3246T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.979+52T>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-3524T>C
  variant of: http://identifiers.org/hgnc/17620
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-8370197-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8370197
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8370197
    reference: chr 17
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+6719G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.980-51G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-51G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+6719G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000578172
  gene symbol: NDEL1
  hgvsc: ENST00000578172.1:n.2644G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.579-51G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.945-51G>T
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-272G>T
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32460
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-8370199-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8370199
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8370199
    reference: chr 17
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.945-49G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000578172
  gene symbol: NDEL1
  hgvsc: ENST00000578172.1:n.2646G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+6721G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.980-49G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+6721G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-270G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-49G>C
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.579-49G>C
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-8370199-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8370199
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8370200
    reference: chr 17
allele count: 18
allele frequency: 1.489129355703365e-4
allele num: 120876
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000464634
  ensembl transcript: ENST00000581679
  gene symbol: NDEL1
  hgvsc: ENST00000581679.1:c.417+6726dupT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000369364
  ensembl transcript: ENST00000380025
  gene symbol: NDEL1
  hgvsc: ENST00000380025.4:c.793-44dupT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000578172
  gene symbol: NDEL1
  hgvsc: ENST00000578172.1:n.2651dupT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000299734
  ensembl transcript: ENST00000299734
  gene symbol: NDEL1
  hgvsc: ENST00000299734.7:c.944+6726dupT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000333982
  ensembl transcript: ENST00000334527
  gene symbol: NDEL1
  hgvsc: ENST00000334527.7:c.945-44dupT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl transcript: ENST00000583683
  gene symbol: NDEL1
  hgvsc: ENST00000583683.1:n.579-44dupT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000463492
  ensembl transcript: ENST00000585098
  gene symbol: NDEL1
  hgvsc: ENST00000585098.1:c.172-265dupT
  variant of: http://identifiers.org/hgnc/17620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166579
  ensembl protein: ENSP00000384963
  ensembl transcript: ENST00000402554
  gene symbol: NDEL1
  hgvsc: ENST00000402554.3:c.980-44dupT
  variant of: http://identifiers.org/hgnc/17620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
reference allele: G

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23587
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 4013
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.063732790323071e-4
allele num: 65806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.792555359326178e-5
allele num: 14722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

FS
type: SiteQuality
SIO_000300: 4.743e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

DP
type: SiteQuality
SIO_000300: 2.410617e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51846452866861e-5
allele num: 65856
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.655e0

FS
type: SiteQuality
SIO_000300: 6.37e0

MQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

DP
type: SiteQuality
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VQSLOD
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SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.245e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23585
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 5.809900069718801e-4
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.379e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

DP
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SIO_000300: 2.413214e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

FS
type: SiteQuality
SIO_000300: 6.535e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15424
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.74089226573154e-5
allele num: 10266
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.595155709342561e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.783865597093991e-4
allele num: 66070
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

DP
type: SiteQuality
SIO_000300: 2.426133e6

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.45e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.68e-1

QD
type: SiteQuality
SIO_000300: 9.35e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 6.42e-1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 4.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.158e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

DP
type: SiteQuality
SIO_000300: 2.448911e6

MQ
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.798e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
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SIO_000300: 1.782e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

FS
type: SiteQuality
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.405e1

MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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DP
type: SiteQuality
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 4.33e-1

MQ
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

InbreedingCoeff
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MQ
type: SiteQuality
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FS
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MQRankSum
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SIO_000300: 9.04e-1

BaseQRankSum
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SIO_000300: -5.248e0

QD
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ReadPosRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 29
allele frequency: 4.346131942571112e-4
allele num: 66726
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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African
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.723e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

African
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MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
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SIO_000300: 5.968e1

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
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SIO_000300: 2.449571e6

QD
type: SiteQuality
SIO_000300: 1.462e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

DP
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SIO_000300: 2.449502e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

FS
type: SiteQuality
SIO_000300: 4.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.798e1

VQSLOD
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SIO_000300: 3.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 120
allele frequency: 1.153180857197771e-2
allele num: 10406
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 1.101321585903084e-3
allele num: 908
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South Asian
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DP
type: SiteQuality
SIO_000300: 2.458538e6

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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QD
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11574
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 9.609840476648087e-5
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Latino
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MQRankSum
type: SiteQuality
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VQSLOD
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QD
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.99895036737142e-5
allele num: 66690
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Other
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South Asian
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African
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East Asian
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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QD
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66690
num of homozygotes: 0

Latino
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African
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Other
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South Asian
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East Asian
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European (Finnish)
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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DP
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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SIO_000300: 1.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

BaseQRankSum
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SIO_000300: 3.58e-1

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.145e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

DP
type: SiteQuality
SIO_000300: 2.447941e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 9
allele frequency: 5.473120895159329e-4
allele num: 16444
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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BaseQRankSum
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SIO_000300: -3.832e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
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SIO_000300: 1.278e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

DP
type: SiteQuality
SIO_000300: 2.445751e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

DP
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SIO_000300: 2.445416e6

MQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

FS
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.413e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

DP
type: SiteQuality
SIO_000300: 2.444264e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

VQSLOD
type: SiteQuality
SIO_000300: -2.061e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.465e0

MQ
type: SiteQuality
SIO_000300: 5.847e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.358e1

DP
type: SiteQuality
SIO_000300: 2.443647e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

DP
type: SiteQuality
SIO_000300: 2.441833e6

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 5.497e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
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South Asian
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.508024283224139e-5
allele num: 66548
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.439087e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502855425308085e-5
allele num: 66540
num of homozygotes: 0

Other
type: Population
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allele num: 902
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Latino
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allele count: 0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

QD
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DP
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SIO_000300: 2.396876e6

BaseQRankSum
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MQRankSum
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SIO_000300: -3.81e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.535284513515148e-5
allele num: 66148
num of homozygotes: 0

ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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DP
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MQRankSum
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10304
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East Asian
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allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.023248783142365e-5
allele num: 66154
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

QD
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InbreedingCoeff
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SIO_000300: 7.2e-3

VQSLOD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 7.201e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8624
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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European (Non-Finnish)
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allele frequency: 6.069434328720563e-5
allele num: 65904
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e0

MQ
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SIO_000300: 5.903e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
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SIO_000300: 2.065e0

QD
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SIO_000300: 1.425e1

ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 2.358418e6

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 33
allele frequency: 5.007435282692482e-4
allele num: 65902
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 14806
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Latino
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allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.658e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.354094e6

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: NaN
allele num: 0
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Other
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allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
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Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
allele frequency: NaN
allele num: 0
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South Asian
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allele count: 0
allele frequency: NaN
allele num: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.155e-1

VQSLOD
type: SiteQuality
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.509388395822013e-5
allele num: 66252
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European (Finnish)
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East Asian
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Latino
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African
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Other
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South Asian
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QD
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VQSLOD
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 1.248751248751249e-4
allele num: 16016
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European (Non-Finnish)
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allele num: 66190
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Other
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East Asian
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European (Finnish)
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Latino
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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FS
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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South Asian
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Other
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European (Non-Finnish)
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MQRankSum
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QD
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.857441374506617e-3
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.27e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.736068e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

QD
type: SiteQuality
SIO_000300: 1.528e1

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3119
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.696e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.086e0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 2.7474e6

GenotypeQuality
all individuals: 6833
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.470355731225296e-4
allele num: 16192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.17e1

FS
type: SiteQuality
SIO_000300: 6.52e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.749205e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.823e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 4111
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.765e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.177e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

MQ
type: SiteQuality
SIO_000300: 5.685e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.751239e6

QD
type: SiteQuality
SIO_000300: 8.15e0

GenotypeQuality
all individuals: 2941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6883
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.132711885195633e-5
allele num: 16306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.31e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

FS
type: SiteQuality
SIO_000300: 8.06e-1

DP
type: SiteQuality
SIO_000300: 2.757105e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.918e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6901
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

DP
type: SiteQuality
SIO_000300: 2.758956e6

FS
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
all individuals: 4106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.477051460361613e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.954593294241467e-4
allele num: 66510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.125199068969742e-5
allele num: 16326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.193905817174516e-4
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.564296520423601e-4
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

DP
type: SiteQuality
SIO_000300: 2.758956e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 17630
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6907
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.757829e6

FS
type: SiteQuality
SIO_000300: 1.545e1

MQRankSum
type: SiteQuality
SIO_000300: -3.83e0

QD
type: SiteQuality
SIO_000300: 1.115e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.196e-1

MQ
type: SiteQuality
SIO_000300: 5.061e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

GenotypeQuality
all individuals: 243
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17633
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 2381
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GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.747e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.158e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: -8.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.386e0

DP
type: SiteQuality
SIO_000300: 2.7594e6

QD
type: SiteQuality
SIO_000300: 1.162e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3118
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 74
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 4104
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GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.113216774666829e-5
allele num: 16358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.411e1

QD
type: SiteQuality
SIO_000300: 1.017e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.579e0

MQRankSum
type: SiteQuality
SIO_000300: -1.141e0

FS
type: SiteQuality
SIO_000300: 2.401e1

DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

Latino
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allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.77e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.762575e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele num: 10398
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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MQ
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

South Asian
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East Asian
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -8.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Finnish)
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num of homozygotes: 0

African
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allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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DP
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.7647e1

MQ
type: SiteQuality
SIO_000300: 5.25e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16456
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.765005e6

MQRankSum
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.501260352898812e-5
allele num: 66648
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10398
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Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 3.646086533787069e-4
allele num: 16456
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
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SIO_000300: -1.034e0

FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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DP
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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East Asian
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African
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South Asian
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allele num: 16458
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QD
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 66656
num of homozygotes: 0

East Asian
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African
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South Asian
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MQ
type: SiteQuality
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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Other
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African
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BaseQRankSum
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QD
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 2.250360057609218e-4
allele num: 66656
num of homozygotes: 0

Latino
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allele frequency: 7.781428324399101e-4
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East Asian
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.215362177929023e-4
allele num: 16456
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.766447e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.297e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.79e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 17638
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

QD
type: SiteQuality
SIO_000300: 1.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 1.688e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.341e0

DP
type: SiteQuality
SIO_000300: 2.76262e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.761073e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 5.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.623208506703652e-4
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.205e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 2.761073e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.65586156470875e-4
allele num: 16412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.477e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.078e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 2.748982e6

FS
type: SiteQuality
SIO_000300: 2.841e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1565
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.304e0

VQSLOD
type: SiteQuality
SIO_000300: -1.807e0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.03e-1

DP
type: SiteQuality
SIO_000300: 2.744759e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.657198585883213e-4
allele num: 16406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.744905e6

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.24e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.116207951070337e-5
allele num: 16350
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.446483180428135e-4
allele num: 16350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: -1.55e-1

MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504483360414034e-5
allele num: 66468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 7.361e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.371e0

DP
type: SiteQuality
SIO_000300: 2.734697e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

GenotypeQuality
all individuals: 5220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.249e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 8.52e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.863e0

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

DP
type: SiteQuality
SIO_000300: 2.347824e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-1

GenotypeQuality
all individuals: 5676
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3496
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 590
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.23e1

DP
type: SiteQuality
SIO_000300: 2.349653e6

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1