15-78454736-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78454736
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78454736
    reference: chr 15
allele count: 5
allele frequency: 4.166875010417187e-5
allele num: 119994
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.611+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*313+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.284+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1146+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1302+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-3756C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*313+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.559+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*313+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*752+27C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.506+27C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-78454738-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78454738
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78454738
    reference: chr 15
allele count: 2
allele frequency: 1.666972278251013e-5
allele num: 119978
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.611+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.506+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-3754A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1302+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.284+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*313+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.559+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*313+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*752+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*313+29A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1146+29A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-78454739-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78454739
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78454739
    reference: chr 15
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1146+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-3753T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.284+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*313+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.611+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.559+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*752+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*313+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.506+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1302+30T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*313+30T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

15-78454760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78454760
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78454760
    reference: chr 15
allele count: 1
allele frequency: 8.418217021634817e-6
allele num: 118790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*752+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-3732C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.506+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*313+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.559+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.611+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*313+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1302+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1146+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.284+51C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*313+51C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-78455801-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455801
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455800
    reference: chr 15
allele count: 1
allele frequency: 8.431418839162254e-6
allele num: 118604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*314-8delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*753-45delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1147-45delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2688delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.560-45delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.612-45delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.507-45delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*314-45delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1303-45delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.285-45delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*314-8delT
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: CT
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

15-78455807-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455807
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455808
    reference: chr 15
allele count: 10
allele frequency: 8.423464402439435e-5
allele num: 118716
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1303-41dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*314-41dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.560-41dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*314-4dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2684dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.612-41dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.285-41dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1147-41dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*314-4dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.507-41dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*753-41dupT
  variant of: http://identifiers.org/hgnc/5384
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10696
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7395
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11478
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*314-4dupT
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

15-78455813-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455814
    reference: chr 15
allele count: 222
allele frequency: 1.88640766799225e-3
allele num: 117684
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.560-28dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.285-28dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*323dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2671dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.507-28dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*314-28dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*323dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.612-28dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*753-28dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1147-28dupT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1303-28dupT
  variant of: http://identifiers.org/hgnc/5384
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 11335
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 4.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
num of homozygotes: 2
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

15-78455813-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455812
    reference: chr 15
allele count: 3
allele frequency: 2.549199551340879e-5
allele num: 117684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.507-28delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*753-28delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.560-28delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1303-28delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*323delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1147-28delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*323delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.612-28delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.285-28delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*314-28delT
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2671delT
  variant of: http://identifiers.org/hgnc/5384
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11335
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: CT
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-78455813-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455811
    reference: chr 15
allele count: 1
allele frequency: 8.49733183780293e-6
allele num: 117684
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3320
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17612
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4011
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8332
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 880
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9686
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6572
  num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: CTT
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-78455825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455825
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455825
    reference: chr 15
allele count: 5
allele frequency: 4.181650915781551e-5
allele num: 119570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.560-24C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2667C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*327C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.612-24C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1303-24C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.507-24C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*314-24C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.285-24C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*327C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1147-24C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*753-24C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11043
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

15-78455826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455826
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455826
    reference: chr 15
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.560-23A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2666A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*328A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1147-23A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1303-23A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.612-23A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*753-23A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.285-23A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*328A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.507-23A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*314-23A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

15-78455833-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455833
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455833
    reference: chr 15
allele count: 1
allele frequency: 8.334166750008334e-6
allele num: 119988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*314-16A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.507-16A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.285-16A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2659A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1303-16A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.560-16A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.612-16A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*335A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*753-16A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1147-16A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*335A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

15-78455845-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455845
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455845
    reference: chr 15
allele count: 1
allele frequency: 8.310341388824253e-6
allele num: 120332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1303-4A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.612-4A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*347A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*753-4A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.285-4A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1147-4A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.560-4A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2647A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*347A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*314-4A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.507-4A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.612-4A>G
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

15-78455851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455851
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455851
    reference: chr 15
allele count: 4
allele frequency: 3.318070210365652e-5
allele num: 120552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*755G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*316G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*353G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1305G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2641G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.614G>A
  hgvsp: ENSP00000299518.2:p.Arg205Gln
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.287G>A
  hgvsp: ENSP00000387506.2:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.509G>A
  hgvsp: ENSP00000453084.1:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*353G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1149G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.562G>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg205Gln
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

15-78455864-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455864
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455864
    reference: chr 15
allele count: 3
allele frequency: 2.483361478096752e-5
allele num: 120804
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.627G>T
  hgvsp: ENST00000299518.2:c.627G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.522G>T
  hgvsp: ENST00000558554.1:c.522G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*366G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.300G>T
  hgvsp: ENST00000441490.2:c.300G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*329G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1318G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*366G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1162G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*768G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.575G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2628G>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly209Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

15-78455866-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455866
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455866
    reference: chr 15
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2626T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1320T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*770T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*368T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*368T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.524T>C
  hgvsp: ENSP00000453084.1:p.Leu175Pro
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.302T>C
  hgvsp: ENSP00000387506.2:p.Leu101Pro
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1164T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.629T>C
  hgvsp: ENSP00000299518.2:p.Leu210Pro
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*331T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.577T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu210Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/15-78455888-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455888
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455888
    reference: chr 15
allele count: 59
allele frequency: 4.87603305785124e-4
allele num: 121000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*390A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1186A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.651A>C
  hgvsp: ENSP00000299518.2:p.Glu217Asp
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.546A>C
  hgvsp: ENSP00000453084.1:p.Glu182Asp
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.324A>C
  hgvsp: ENSP00000387506.2:p.Glu108Asp
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2604A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*353A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1342A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453992
  ensembl transcript: ENST00000558509
  gene symbol: IDH3A
  hgvsc: ENST00000558509.1:c.*390A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*792A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.599A>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu217Asp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

15-78455918-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455918
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455918
    reference: chr 15
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.354T>C
  hgvsp: ENST00000441490.2:c.354T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1216T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*822T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*383T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.681T>C
  hgvsp: ENST00000299518.2:c.681T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.629T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1372T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*420T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.576T>C
  hgvsp: ENST00000558554.1:c.576T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2574T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6776
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe227Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

15-78455927-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455927
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455927
    reference: chr 15
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*392G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.585G>A
  hgvsp: ENSP00000453084.1:p.Met195Ile
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1381G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.363G>A
  hgvsp: ENSP00000387506.2:p.Met121Ile
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.690G>A
  hgvsp: ENSP00000299518.2:p.Met230Ile
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*831G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*429G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2565G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1225G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.638G>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met230Ile
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-78455960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455960
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455960
    reference: chr 15
allele count: 2
allele frequency: 1.648967746190884e-5
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+9A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+9A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+9A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+9A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+9A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+9A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+9A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2532A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+9A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+9A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-78455961-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455961
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455961
    reference: chr 15
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2531T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+10T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

15-78455963-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455963
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455963
    reference: chr 15
allele count: 2
allele frequency: 1.649130908011478e-5
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2529T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+12T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-78455967-CACTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455967
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455963
    reference: chr 15
allele count: 30
allele frequency: 2.475410918212423e-4
allele num: 121192
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+19_714+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+19_387+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+19_1405+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+19_*416+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+19_662+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+19_609+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+19_1249+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+19_*855+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+19_*453+22delTTAC
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2522_28-2519delTTAC
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11387
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13045
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 17836
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: CACTT
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-78455973-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455973
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455973
    reference: chr 15
allele count: 7
allele frequency: 5.774529375855868e-5
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+22C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+22C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+22C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+22C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+22C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+22C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2519C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+22C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+22C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+22C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

15-78455978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455978
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455978
    reference: chr 15
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+27T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2514T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+27T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+27T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+27T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+27T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+27T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+27T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+27T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+27T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

15-78455979-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455979
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455979
    reference: chr 15
allele count: 24
allele frequency: 1.980426781971515e-4
allele num: 121186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+28A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+28A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+28A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+28A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+28A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+28A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2513A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+28A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+28A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+28A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12442
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12818
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14609
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6667
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

15-78455985-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455985
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455985
    reference: chr 15
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+34T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+34T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2507T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+34T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+34T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+34T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+34T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+34T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+34T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+34T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

15-78455991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455991
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455991
    reference: chr 15
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2501G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+40G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+40G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+40G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+40G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+40G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+40G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+40G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+40G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+40G>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-78455991-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78455991
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78455991
    reference: chr 15
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*453+40G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1249+40G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2501G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*855+40G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*416+40G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.662+40G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1405+40G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.714+40G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.609+40G>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.387+40G>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

15-78456009-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456009
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456009
    reference: chr 15
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-49G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-49G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-49G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-49G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-49G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-49G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-49G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-49G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2483G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-49G>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-78456011-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456011
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456011
    reference: chr 15
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-47G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-47G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-47G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-47G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-47G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2481G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-47G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-47G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-47G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-47G>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

15-78456032-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456032
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456032
    reference: chr 15
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-26T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2460T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-26T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-26T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-26T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-26T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-26T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-26T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-26T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-26T>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

15-78456039-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456039
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456039
    reference: chr 15
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-19A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-19A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-19A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2453A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-19A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-19A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-19A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-19A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-19A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-19A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14957
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-78456045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456045
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456045
    reference: chr 15
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2447G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-13G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-13G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-13G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-13G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-13G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-13G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-13G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-13G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-13G>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-78456047-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456047
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456047
    reference: chr 15
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2445A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-11A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-11A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-11A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-11A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-11A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-11A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-11A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-11A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-11A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14912
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-78456048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456048
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456048
    reference: chr 15
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2444T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-10T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-10T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

15-78456052-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456052
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456052
    reference: chr 15
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-6T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2440T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
hgvs: c.715-6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

15-78456053-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456053
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456053
    reference: chr 15
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-5T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-5T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-5T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-5T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-5T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-5T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-5T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2439T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-5T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-5T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: c.715-5T>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

15-78456055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456055
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456055
    reference: chr 15
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1406-3T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*417-3T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2437T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.388-3T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.610-3T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*454-3T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.715-3T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*856-3T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1250-3T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.663-3T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29155
  bin: 6.25e1
  variant carriers: 0
hgvs: c.715-3T>C
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-78456090-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456090
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456090
    reference: chr 15
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.420T>C
  hgvsp: ENST00000441490.2:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2402T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.642T>C
  hgvsp: ENST00000558554.1:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*449T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1282T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*486T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.695T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.33T>C
  hgvsp: ENST00000561366.1:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.747T>C
  hgvsp: ENST00000299518.2:c.747T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*888T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1438T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu249Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/15-78456111-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456111
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456111
    reference: chr 15
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*470A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.663A>C
  hgvsp: ENST00000558554.1:c.663A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*909A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.54A>C
  hgvsp: ENST00000561366.1:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.768A>C
  hgvsp: ENST00000299518.2:c.768A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*507A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.441A>C
  hgvsp: ENST00000441490.2:c.441A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1303A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2381A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1459A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.716A>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly256Gly
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

15-78456120-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456120
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456120
    reference: chr 15
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.777T>C
  hgvsp: ENST00000299518.2:c.777T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*918T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1312T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.450T>C
  hgvsp: ENST00000441490.2:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*479T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*516T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1468T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.63T>C
  hgvsp: ENST00000561366.1:c.63T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.672T>C
  hgvsp: ENST00000558554.1:c.672T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2372T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.725T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.777T>C
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-78456125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456125
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456125
    reference: chr 15
allele count: 2
allele frequency: 1.650355651642929e-5
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2367G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+3G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+3G>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.779+3G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

15-78456129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456129
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456129
    reference: chr 15
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+7C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2363C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+7C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14752
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.779+7C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

15-78456134-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456134
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456134
    reference: chr 15
allele count: 1
allele frequency: 8.261731658955718e-6
allele num: 121040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2358T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+12T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+12T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

15-78456139-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456139
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456139
    reference: chr 15
allele count: 2
allele frequency: 1.653657891255457e-5
allele num: 120944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2353C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+17C>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+17C>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

15-78456146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456146
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456146
    reference: chr 15
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2346A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+24A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+24A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

15-78456153-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456153
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456153
    reference: chr 15
allele count: 4
allele frequency: 3.317574852782616e-5
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2339C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+31C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+31C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-78456163-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456163
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456163
    reference: chr 15
allele count: 1
allele frequency: 8.315593400745077e-6
allele num: 120256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2329A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+41A>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+41A>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

15-78456167-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456167
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456167
    reference: chr 15
allele count: 1
allele frequency: 8.328475056217207e-6
allele num: 120070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2325A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+45A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+45A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

15-78456173-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78456173
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78456173
    reference: chr 15
allele count: 1
allele frequency: 8.374788536589452e-6
allele num: 119406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-2319A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.452+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.674+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*518+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*920+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.779+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*481+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.727+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+51A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1470+51A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-78457286-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457286
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457286
    reference: chr 15
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-48G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-48G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+1164G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1206G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-48G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-48G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-48G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-48G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-48G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+1164G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-48G>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-78457291-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457291
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457291
    reference: chr 15
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1201T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-43T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-43T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-43T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-43T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-43T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-43T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-43T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+1169T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-43T>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+1169T>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-78457299-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457299
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457299
    reference: chr 15
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-35T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+1177T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+1177T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-35T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-35T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1193T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-35T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-35T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-35T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-35T>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-35T>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

15-78457300-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457300
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457300
    reference: chr 15
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+1178A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-34A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-34A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-34A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-34A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-34A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-34A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-34A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+1178A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1192A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-34A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

15-78457303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457303
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457303
    reference: chr 15
allele count: 13
allele frequency: 1.074184858951265e-4
allele num: 121022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-31A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-31A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-31A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+1181A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+1181A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-31A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1189A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-31A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-31A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-31A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-31A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10248
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-78457305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457305
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457305
    reference: chr 15
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1187C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-29C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-29C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-29C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.65+1183C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-29C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-29C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1314+1183C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-29C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-29C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-29C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

15-78457312-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457312
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457312
    reference: chr 15
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-22T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-22T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1180T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-22T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-22T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-22T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-22T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1180T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1180T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-22T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-22T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

15-78457328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457328
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457328
    reference: chr 15
allele count: 9
allele frequency: 7.420966704596052e-5
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-6C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1164C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-6C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-6C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-6C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-6C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-6C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-6C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1164C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-6C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1164C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.780-6C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-78457329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457329
    reference: chr 15
allele count: 5
allele frequency: 4.122623307663132e-5
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-5G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1163G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-5G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-5G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1163G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-5G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-5G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-5G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-5G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-5G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1163G>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10260
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.780-5G>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-78457329-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457329
    reference: chr 15
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*921-5G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*519-5G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.453-5G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1163G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1471-5G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*482-5G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1163G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.728-5G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.780-5G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.675-5G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1163G>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.780-5G>T
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

15-78457342-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457342
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457342
    reference: chr 15
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*527G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*929G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.788G>T
  hgvsp: ENSP00000299518.2:p.Cys263Phe
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*490G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1150G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1479G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.461G>T
  hgvsp: ENSP00000387506.2:p.Cys154Phe
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.683G>T
  hgvsp: ENSP00000453084.1:p.Cys228Phe
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1150G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1150G>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.736G>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys263Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

15-78457355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457355
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457355
    reference: chr 15
allele count: 23
allele frequency: 1.895187870797627e-4
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.801C>T
  hgvsp: ENST00000299518.2:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1492C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.474C>T
  hgvsp: ENST00000441490.2:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*540C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1137C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*503C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*942C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1137C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.749C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.696C>T
  hgvsp: ENST00000558554.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1137C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile267Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

15-78457364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457364
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457364
    reference: chr 15
allele count: 4
allele frequency: 3.29549012176836e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1501C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*512C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.705C>T
  hgvsp: ENST00000558554.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1128C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.810C>T
  hgvsp: ENST00000299518.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1128C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*549C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.483C>T
  hgvsp: ENST00000441490.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.758C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*951C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1128C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu270Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

15-78457365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457365
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457365
    reference: chr 15
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.811G>A
  hgvsp: ENSP00000299518.2:p.Gly271Ser
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1127G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1502G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*952G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.706G>A
  hgvsp: ENSP00000453084.1:p.Gly236Ser
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.759G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.484G>A
  hgvsp: ENSP00000387506.2:p.Gly162Ser
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*513G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*550G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1127G>A
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1127G>A
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10682
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly271Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

15-78457382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457382
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457382
    reference: chr 15
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.723C>T
  hgvsp: ENST00000558554.1:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.501C>T
  hgvsp: ENST00000441490.2:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*567C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1519C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*969C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1110C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.776C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*530C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1110C>T
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.828C>T
  hgvsp: ENST00000299518.2:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1110C>T
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly276Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-78457397-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457397
    reference: chr 15
allele count: 7
allele frequency: 5.766822645488697e-5
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1095T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*582T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1534T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.738T>C
  hgvsp: ENST00000558554.1:c.738T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*984T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*545T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.516T>C
  hgvsp: ENST00000441490.2:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.843T>C
  hgvsp: ENST00000299518.2:c.843T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1095T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.791T>C
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1095T>C
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn281Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

15-78457407-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78457407
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78457407
    reference: chr 15
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000387506
  ensembl transcript: ENST00000441490
  gene symbol: IDH3A
  hgvsc: ENST00000441490.2:c.526A>G
  hgvsp: ENSP00000387506.2:p.Ile176Val
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000299518
  ensembl transcript: ENST00000299518
  gene symbol: IDH3A
  hgvsc: ENST00000299518.2:c.853A>G
  hgvsp: ENSP00000299518.2:p.Ile285Val
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558602
  gene symbol: IDH3A
  hgvsc: ENST00000558602.1:n.1315-1085A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000452620
  ensembl transcript: ENST00000558933
  gene symbol: IDH3A
  hgvsc: ENST00000558933.1:c.*555A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000559889
  gene symbol: IDH3A
  hgvsc: ENST00000559889.1:n.1544A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453989
  ensembl transcript: ENST00000559205
  gene symbol: IDH3A
  hgvsc: ENST00000559205.1:c.28-1085A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453084
  ensembl transcript: ENST00000558554
  gene symbol: IDH3A
  hgvsc: ENST00000558554.1:c.748A>G
  hgvsp: ENSP00000453084.1:p.Ile250Val
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453338
  ensembl transcript: ENST00000559803
  gene symbol: IDH3A
  hgvsc: ENST00000559803.1:c.*592A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166411
  ensembl transcript: ENST00000558535
  gene symbol: IDH3A
  hgvsc: ENST00000558535.1:n.801A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453033
  ensembl transcript: ENST00000560667
  gene symbol: IDH3A
  hgvsc: ENST00000560667.1:c.*994A>G
  variant of: http://identifiers.org/hgnc/5384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166411
  ensembl protein: ENSP00000453795
  ensembl transcript: ENST00000561366
  gene symbol: IDH3A
  hgvsc: ENST00000561366.1:c.66-1085A>G
  variant of: http://identifiers.org/hgnc/5384
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile285Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-78457426-C-T
type: Variant
allele count: 17
allele frequency: 1.400606380174005e-4
allele num: 121376
alternate allele: T
canonical: true
consequence: splice region
filter: PASS
hgvs: c.864+8C>T
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18725
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10183
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15702
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.799118533982835e-4
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.594e0

FS
type: SiteQuality
SIO_000300: 7.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

DP
type: SiteQuality
SIO_000300: 1.771516e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.232e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 10185
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1097
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5510
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.527e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

FS
type: SiteQuality
SIO_000300: 1.005e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.905e1

DP
type: SiteQuality
SIO_000300: 1.768225e6

QD
type: SiteQuality
SIO_000300: 8.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

GenotypeQuality
all individuals: 1158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10185
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7239
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510072181450273e-5
allele num: 66222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15664
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.423e1

DP
type: SiteQuality
SIO_000300: 1.766348e6

FS
type: SiteQuality
SIO_000300: 1.304e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

GenotypeQuality
all individuals: 1031
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7059
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15118
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10195
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517358582180141e-5
allele num: 65904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.099e0

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.756409e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.22e0

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

GenotypeQuality
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17489
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029654036243822e-4
allele num: 9712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 2.083561e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.956e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 3.081e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.134e1

GenotypeQuality
all individuals: 2289
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17525
bin: 9.75e1
variant carriers: 10

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.930966469428008e-4
allele num: 16224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738828029907842e-4
allele num: 11502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 1.381e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.102703e6

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 198
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 308
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 637
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 751
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12290
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 17612
bin: 9.75e1
variant carriers: 218

GenotypeQuality
all individuals: 4011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4348
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 15
allele frequency: 1.310501485235017e-3
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.297229219143577e-5
allele num: 15880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.465787202564418e-4
allele num: 64888
num of homozygotes: 0

African
type: Population
allele count: 190
allele frequency: 1.961594053272765e-2
allele num: 9686
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.039e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

DP
type: SiteQuality
SIO_000300: 2.145344e6

GenotypeQuality
all individuals: 320
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 751
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 739
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12290
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4348
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17612
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 794
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.064835845550279e-4
allele num: 9686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.297229219143577e-5
allele num: 15880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 2.145344e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.039e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541117001602762e-5
allele num: 64888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.145344e6

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
all individuals: 17790
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 14924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4879
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.690431519699812e-4
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517865274278255e-5
allele num: 65882
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.136e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.072e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

FS
type: SiteQuality
SIO_000300: 1.4299e1

DP
type: SiteQuality
SIO_000300: 2.172593e6

VQSLOD
type: SiteQuality
SIO_000300: -2.023e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.318e0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17791
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15116
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516852228255923e-5
allele num: 65926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.342e0

FS
type: SiteQuality
SIO_000300: 1.0385e1

VQSLOD
type: SiteQuality
SIO_000300: -1.335e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

DP
type: SiteQuality
SIO_000300: 2.174617e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17798
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-5
allele num: 66120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.908e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: -1.595e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.219e0

DP
type: SiteQuality
SIO_000300: 2.18254e6

GenotypeDepth
all individuals: 1638
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7767
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2495
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4951
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17805
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507704369327262e-5
allele num: 66326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.189807e6

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.23e-1

QD
type: SiteQuality
SIO_000300: 1.54e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e-1

FS
type: SiteQuality
SIO_000300: 3.647e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeDepth
all individuals: 7769
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4519
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17811
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 16181
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.193381e6

FS
type: SiteQuality
SIO_000300: 6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.102e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

GenotypeQuality
all individuals: 17814
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818181818181818e-4
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.196245e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.529e0

QD
type: SiteQuality
SIO_000300: 1.211e1

VQSLOD
type: SiteQuality
SIO_000300: 5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

FS
type: SiteQuality
SIO_000300: 4.187e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 6757
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

DP
type: SiteQuality
SIO_000300: 2.196472e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

FS
type: SiteQuality
SIO_000300: 9.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 59

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 58
allele frequency: 8.69878217049613e-4
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.202409e6

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.201045e6

MQRankSum
type: SiteQuality
SIO_000300: -1.542e0

VQSLOD
type: SiteQuality
SIO_000300: -2.799e0

QD
type: SiteQuality
SIO_000300: 1.108e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 8.864000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.101e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.201883e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.996e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.335e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999760019198464e-5
allele num: 66672
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.251e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

VQSLOD
type: SiteQuality
SIO_000300: -2.879e-1

DP
type: SiteQuality
SIO_000300: 2.201376e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 170
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 2.201545e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
all individuals: 319
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5006
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3616
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.602629919841484e-4
allele num: 66618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819725827975252e-4
allele num: 16486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.379e1

MQRankSum
type: SiteQuality
SIO_000300: -1.858e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

FS
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 2.202373e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeQuality
all individuals: 5018
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.745037579495086e-4
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.741e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 2.203478e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.481e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.507e1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3619
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.055e1

DP
type: SiteQuality
SIO_000300: 2.204402e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.293e0

VQSLOD
type: SiteQuality
SIO_000300: -3.186e-1

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3863
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
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GenotypeQuality
all individuals: 3618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17851
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 5078
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.193006750908776e-4
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201201201201201e-4
allele num: 66600
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.632055480639568e-4
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 1.631e1

DP
type: SiteQuality
SIO_000300: 2.205165e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 2524
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 14565
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variant carriers: 0

GenotypeQuality
all individuals: 210
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GenotypeQuality
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GenotypeQuality
all individuals: 6680
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GenotypeQuality
all individuals: 3884
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variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5114
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GenotypeQuality
all individuals: 17852
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 2.206959e6

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.658e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 5144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 158
bin: 2.75e1
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GenotypeQuality
all individuals: 14356
bin: 6.25e1
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GenotypeQuality
all individuals: 2537
bin: 8.75e1
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GenotypeQuality
all individuals: 4632
bin: 8.25e1
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 342
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GenotypeQuality
all individuals: 17865
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3638
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.775e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.397e0

QD
type: SiteQuality
SIO_000300: 1.619e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.210096e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
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GenotypeQuality
all individuals: 14356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
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GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 3638
bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 2.210096e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.775e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 1.619e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.397e0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
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GenotypeQuality
all individuals: 2847
bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 3241
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 5.25e1
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GenotypeQuality
all individuals: 191
bin: 3.75e1
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GenotypeQuality
all individuals: 4139
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GenotypeQuality
all individuals: 165
bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9759
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.582e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 2.31529e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.522e1

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.093e0

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 4.898e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

QD
type: SiteQuality
SIO_000300: 1.447e1

MQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

DP
type: SiteQuality
SIO_000300: 2.314375e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.407e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

FS
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.081e1

DP
type: SiteQuality
SIO_000300: 2.308231e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.767e0

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 6.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.639e0

DP
type: SiteQuality
SIO_000300: 2.30779e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.567e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.307302e6

FS
type: SiteQuality
SIO_000300: 2.264e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.137e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.155e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
type: SiteQuality
SIO_000300: -9.821e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 5.22e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.307103e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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African
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Latino
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num of homozygotes: 0

Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.307125e6

BaseQRankSum
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SIO_000300: 1.33e0

MQRankSum
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SIO_000300: 1.08e0

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.129e1

ClippingRankSum
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SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999220202747286e-5
allele num: 66684
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.21e-1

QD
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SIO_000300: 1.034e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.3e-1

ClippingRankSum
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SIO_000300: 3.69e-1

DP
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SIO_000300: 2.307282e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.96e0

DP
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SIO_000300: 2.307663e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.320000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.69e-1

QD
type: SiteQuality
SIO_000300: 1.172e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 3.602e0

DP
type: SiteQuality
SIO_000300: 2.306558e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.971e0

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.32e1

InbreedingCoeff
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SIO_000300: 5.7e-3

DP
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SIO_000300: 2.304564e6

VQSLOD
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SIO_000300: 3.14e0

MQRankSum
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SIO_000300: 5.07e-1

ClippingRankSum
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SIO_000300: -6.66e-1

BaseQRankSum
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SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.003003003003003e-5
allele num: 66600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.975e0

ClippingRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.271e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.301672e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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DP
type: SiteQuality
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

East Asian
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Other
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DP
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ClippingRankSum
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VQSLOD
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SIO_000300: 8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

FS
type: SiteQuality
SIO_000300: 3.899e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 268
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variant carriers: 0

GenotypeQuality
all individuals: 28046
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504709741490866e-5
allele num: 66458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

DP
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.839e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.246888e6

QD
type: SiteQuality
SIO_000300: 1.519e1

FS
type: SiteQuality
SIO_000300: 6.784e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.531858968548899e-5
allele num: 66198
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.324e1

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 3.104e0

DP
type: SiteQuality
SIO_000300: 2.212194e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.711e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514738404677512e-5
allele num: 66018
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.519e1

MQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.854e0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.388e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

DP
type: SiteQuality
SIO_000300: 2.121651e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516898246465627e-5
allele num: 65924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 2.101313e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526111772426212e-5
allele num: 65526
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.372e1

MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
type: SiteQuality
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BaseQRankSum
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DP
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ReadPosRankSum
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SIO_000300: 5.23e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.459977e6

QD
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ReadPosRankSum
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SIO_000300: 1.65e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 66506
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South Asian
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Other
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FS
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MQ
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VQSLOD
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QD
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Other
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Latino
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African
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European (Finnish)
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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African
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.125931058375195e-3
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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FS
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.969e1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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East Asian
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Other
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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African
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East Asian
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QD
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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South Asian
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African
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Other
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Latino
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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African
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European (Finnish)
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VQSLOD
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DP
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FS
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MQRankSum
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BaseQRankSum
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QD
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SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 2.64e0

DP
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SIO_000300: 2.477488e6

FS
type: SiteQuality
SIO_000300: 6.72e-1

ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.322e1

MQRankSum
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SIO_000300: 6.11e-1

VQSLOD
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SIO_000300: 1.43e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.126e1

ReadPosRankSum
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SIO_000300: 1.61e0

BaseQRankSum
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SIO_000300: -2.722e0

ClippingRankSum
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SIO_000300: -1.197e0

VQSLOD
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SIO_000300: -2.722e-1

InbreedingCoeff
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.477848e6

FS
type: SiteQuality
SIO_000300: 4.179e0

MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 8
allele frequency: 1.209555488358028e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 10
allele frequency: 9.619084263178145e-4
allele num: 10396
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ClippingRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
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VQSLOD
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QD
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SIO_000300: 1.232e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

FS
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 2.48032e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

ClippingRankSum
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SIO_000300: -3.77e-1

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: -1.16e-1

FS
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DP
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.4788e6

InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
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SIO_000300: 1.64e-1

ReadPosRankSum
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SIO_000300: -7.49e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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SIO_000300: 1.298e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
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MQRankSum
type: SiteQuality
SIO_000300: 9.76e-1

FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
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SIO_000300: 1.62e0

BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049097775912715e-4
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.478951e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

QD
type: SiteQuality
SIO_000300: 1.243e1