19-5696068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696068
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696068
    reference: chr 19
allele count: 25
allele frequency: 2.400706768072521e-4
allele num: 104136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1748G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1259G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1818G>A
  hgvsp: ENST00000593119.1:c.1818G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1620G>A
  hgvsp: ENST00000590729.1:c.1620G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1668G>A
  hgvsp: ENST00000585374.1:c.1668G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.2010G>A
  hgvsp: ENST00000360614.3:c.2010G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1422G>A
  hgvsp: ENST00000540670.2:c.1422G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36178
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5062
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala670Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-5696068-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696068
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696068
    reference: chr 19
allele count: 1
allele frequency: 9.602827072290082e-6
allele num: 104136
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.2010G>T
  hgvsp: ENST00000360614.3:c.2010G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1818G>T
  hgvsp: ENST00000593119.1:c.1818G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1668G>T
  hgvsp: ENST00000585374.1:c.1668G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1422G>T
  hgvsp: ENST00000540670.2:c.1422G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1620G>T
  hgvsp: ENST00000590729.1:c.1620G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1748G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1259G>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34512
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala670Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-5696068-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696068
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696068
    reference: chr 19
allele count: 19
allele frequency: 1.824537143735116e-4
allele num: 104136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1259G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1422G>C
  hgvsp: ENST00000540670.2:c.1422G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1748G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1818G>C
  hgvsp: ENST00000593119.1:c.1818G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1620G>C
  hgvsp: ENST00000590729.1:c.1620G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.2010G>C
  hgvsp: ENST00000360614.3:c.2010G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1668G>C
  hgvsp: ENST00000585374.1:c.1668G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36178
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala670Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

19-5696069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696069
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696069
    reference: chr 19
allele count: 2
allele frequency: 1.903275537199521e-5
allele num: 105082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1747C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1667C>T
  hgvsp: ENSP00000465585.1:p.Ala556Val
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.2009C>T
  hgvsp: ENSP00000353826.2:p.Ala670Val
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1258C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1421C>T
  hgvsp: ENSP00000441523.1:p.Ala474Val
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1619C>T
  hgvsp: ENSP00000465139.1:p.Ala540Val
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1817C>T
  hgvsp: ENSP00000468541.1:p.Ala606Val
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala670Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

19-5696079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696079
    reference: chr 19
allele count: 2
allele frequency: 1.797591227754809e-5
allele num: 111260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1411C>T
  hgvsp: ENST00000540670.2:c.1411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1999C>T
  hgvsp: ENST00000360614.3:c.1999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1609C>T
  hgvsp: ENST00000590729.1:c.1609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1807C>T
  hgvsp: ENST00000593119.1:c.1807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1737C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1657C>T
  hgvsp: ENST00000585374.1:c.1657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1248C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu667Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-5696093-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696093
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696093
    reference: chr 19
allele count: 59
allele frequency: 5.113449238182732e-4
allele num: 115382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1643T>G
  hgvsp: ENSP00000465585.1:p.Val548Gly
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1595T>G
  hgvsp: ENSP00000465139.1:p.Val532Gly
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1234T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1793T>G
  hgvsp: ENSP00000468541.1:p.Val598Gly
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1985T>G
  hgvsp: ENSP00000353826.2:p.Val662Gly
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1723T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1397T>G
  hgvsp: ENSP00000441523.1:p.Val466Gly
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10679
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val662Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

19-5696095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696095
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696095
    reference: chr 19
allele count: 3
allele frequency: 2.589644873366366e-5
allele num: 115846
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1983C>T
  hgvsp: ENST00000360614.3:c.1983C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1232C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1641C>T
  hgvsp: ENST00000585374.1:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1791C>T
  hgvsp: ENST00000593119.1:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1721C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1593C>T
  hgvsp: ENST00000590729.1:c.1593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1395C>T
  hgvsp: ENST00000540670.2:c.1395C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10854
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr661Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-5696099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696099
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696099
    reference: chr 19
allele count: 1
allele frequency: 8.577064928381508e-6
allele num: 116590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1787G>A
  hgvsp: ENSP00000468541.1:p.Gly596Asp
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1391G>A
  hgvsp: ENSP00000441523.1:p.Gly464Asp
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1637G>A
  hgvsp: ENSP00000465585.1:p.Gly546Asp
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1228G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1589G>A
  hgvsp: ENSP00000465139.1:p.Gly530Asp
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1717G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1979G>A
  hgvsp: ENSP00000353826.2:p.Gly660Asp
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly660Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-5696101-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696101
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696101
    reference: chr 19
allele count: 2
allele frequency: 1.708788298217734e-5
allele num: 117042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1587G>T
  hgvsp: ENST00000590729.1:c.1587G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1389G>T
  hgvsp: ENST00000540670.2:c.1389G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1785G>T
  hgvsp: ENST00000593119.1:c.1785G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1226G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1715G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1977G>T
  hgvsp: ENST00000360614.3:c.1977G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1635G>T
  hgvsp: ENST00000585374.1:c.1635G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6390
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Ser659Ser
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

19-5696101-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696101
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696101
    reference: chr 19
allele count: 2881
allele frequency: 2.461509543582645e-2
allele num: 117042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1635G>A
  hgvsp: ENST00000585374.1:c.1635G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1715G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1785G>A
  hgvsp: ENST00000593119.1:c.1785G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1226G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1587G>A
  hgvsp: ENST00000590729.1:c.1587G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1389G>A
  hgvsp: ENST00000540670.2:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1977G>A
  hgvsp: ENST00000360614.3:c.1977G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 38724
  bin: 2.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 324
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 10798
  bin: 2.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38592
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 9.75e1
  variant carriers: 2810
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.75e1
  variant carriers: 3
hgvs: p.Ser659Ser
num of homozygotes: 48
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

19-5696106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696106
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696106
    reference: chr 19
allele count: 2
allele frequency: 1.696352841391009e-5
allele num: 117900
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1972G>A
  hgvsp: ENSP00000353826.2:p.Val658Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1384G>A
  hgvsp: ENSP00000441523.1:p.Val462Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1582G>A
  hgvsp: ENSP00000465139.1:p.Val528Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1780G>A
  hgvsp: ENSP00000468541.1:p.Val594Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1630G>A
  hgvsp: ENSP00000465585.1:p.Val544Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1221G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1710G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val658Met
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/19-5696106-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696106
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696106
    reference: chr 19
allele count: 2
allele frequency: 1.696352841391009e-5
allele num: 117900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1780G>T
  hgvsp: ENSP00000468541.1:p.Val594Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1710G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1582G>T
  hgvsp: ENSP00000465139.1:p.Val528Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1384G>T
  hgvsp: ENSP00000441523.1:p.Val462Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1221G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1630G>T
  hgvsp: ENSP00000465585.1:p.Val544Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1972G>T
  hgvsp: ENSP00000353826.2:p.Val658Leu
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val658Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-5696106-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696106
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696106
    reference: chr 19
allele count: 1
allele frequency: 8.481764206955047e-6
allele num: 117900
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1972G>C
  hgvsp: ENSP00000353826.2:p.Val658Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1710G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1780G>C
  hgvsp: ENSP00000468541.1:p.Val594Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1630G>C
  hgvsp: ENSP00000465585.1:p.Val544Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1384G>C
  hgvsp: ENSP00000441523.1:p.Val462Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1221G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1582G>C
  hgvsp: ENSP00000465139.1:p.Val528Leu
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val658Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-5696107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696107
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696107
    reference: chr 19
allele count: 2
allele frequency: 1.694139969844308e-5
allele num: 118054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1581C>T
  hgvsp: ENST00000590729.1:c.1581C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1220C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1709C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1779C>T
  hgvsp: ENST00000593119.1:c.1779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1971C>T
  hgvsp: ENST00000360614.3:c.1971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1629C>T
  hgvsp: ENST00000585374.1:c.1629C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1383C>T
  hgvsp: ENST00000540670.2:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39505
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn657Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

19-5696113-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696113
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696113
    reference: chr 19
allele count: 5
allele frequency: 4.219694156567532e-5
allele num: 118492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1214G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1575G>C
  hgvsp: ENSP00000465139.1:p.Met525Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1965G>C
  hgvsp: ENSP00000353826.2:p.Met655Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1773G>C
  hgvsp: ENSP00000468541.1:p.Met591Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1703G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1377G>C
  hgvsp: ENSP00000441523.1:p.Met459Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1623G>C
  hgvsp: ENSP00000465585.1:p.Met541Ile
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met655Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-5696114-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696114
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696114
    reference: chr 19
allele count: 1
allele frequency: 8.433125316242199e-6
allele num: 118580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1622T>G
  hgvsp: ENSP00000465585.1:p.Met541Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1772T>G
  hgvsp: ENSP00000468541.1:p.Met591Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1213T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1574T>G
  hgvsp: ENSP00000465139.1:p.Met525Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1964T>G
  hgvsp: ENSP00000353826.2:p.Met655Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1376T>G
  hgvsp: ENSP00000441523.1:p.Met459Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1702T>G
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met655Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-5696115-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696115
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696115
    reference: chr 19
allele count: 1
allele frequency: 8.427865895797866e-6
allele num: 118654
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1963A>T
  hgvsp: ENSP00000353826.2:p.Met655Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1771A>T
  hgvsp: ENSP00000468541.1:p.Met591Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1573A>T
  hgvsp: ENSP00000465139.1:p.Met525Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1375A>T
  hgvsp: ENSP00000441523.1:p.Met459Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1701A>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1212A>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1621A>T
  hgvsp: ENSP00000465585.1:p.Met541Leu
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met655Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-5696125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696125
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696125
    reference: chr 19
allele count: 1
allele frequency: 8.395741679819996e-6
allele num: 119108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1691C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1611C>T
  hgvsp: ENST00000585374.1:c.1611C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1563C>T
  hgvsp: ENST00000590729.1:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1365C>T
  hgvsp: ENST00000540670.2:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1953C>T
  hgvsp: ENST00000360614.3:c.1953C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1761C>T
  hgvsp: ENST00000593119.1:c.1761C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1202C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6882
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp651Asp
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

19-5696125-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696125
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696125
    reference: chr 19
allele count: 1
allele frequency: 8.395741679819996e-6
allele num: 119108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1611C>G
  hgvsp: ENSP00000465585.1:p.Asp537Glu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1563C>G
  hgvsp: ENSP00000465139.1:p.Asp521Glu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1365C>G
  hgvsp: ENSP00000441523.1:p.Asp455Glu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1761C>G
  hgvsp: ENSP00000468541.1:p.Asp587Glu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1953C>G
  hgvsp: ENSP00000353826.2:p.Asp651Glu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1691C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1202C>G
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp651Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

19-5696129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696129
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696129
    reference: chr 19
allele count: 4
allele frequency: 3.357676487870394e-5
allele num: 119130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1687G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1198G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1949G>A
  hgvsp: ENSP00000353826.2:p.Arg650Gln
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1757G>A
  hgvsp: ENSP00000468541.1:p.Arg586Gln
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1607G>A
  hgvsp: ENSP00000465585.1:p.Arg536Gln
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1361G>A
  hgvsp: ENSP00000441523.1:p.Arg454Gln
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1559G>A
  hgvsp: ENSP00000465139.1:p.Arg520Gln
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg650Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

19-5696130-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696130
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696130
    reference: chr 19
allele count: 1
allele frequency: 8.390247176681825e-6
allele num: 119186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1756C>T
  hgvsp: ENSP00000468541.1:p.Arg586Ter
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1558C>T
  hgvsp: ENSP00000465139.1:p.Arg520Ter
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1948C>T
  hgvsp: ENSP00000353826.2:p.Arg650Ter
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1197C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1360C>T
  hgvsp: ENSP00000441523.1:p.Arg454Ter
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1606C>T
  hgvsp: ENSP00000465585.1:p.Arg536Ter
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1686C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39466
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg650Ter
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/19-5696131-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696131
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696131
    reference: chr 19
allele count: 3
allele frequency: 2.516398530423258e-5
allele num: 119218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1359G>T
  hgvsp: ENST00000540670.2:c.1359G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1947G>T
  hgvsp: ENST00000360614.3:c.1947G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1605G>T
  hgvsp: ENST00000585374.1:c.1605G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1755G>T
  hgvsp: ENST00000593119.1:c.1755G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1685G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1196G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1557G>T
  hgvsp: ENST00000590729.1:c.1557G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu649Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

19-5696134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696134
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696134
    reference: chr 19
allele count: 10
allele frequency: 8.390528771123157e-5
allele num: 119182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1752G>A
  hgvsp: ENST00000593119.1:c.1752G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1554G>A
  hgvsp: ENST00000590729.1:c.1554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1193G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1602G>A
  hgvsp: ENST00000585374.1:c.1602G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1944G>A
  hgvsp: ENST00000360614.3:c.1944G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1356G>A
  hgvsp: ENST00000540670.2:c.1356G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1682G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro648Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

19-5696135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696135
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696135
    reference: chr 19
allele count: 1
allele frequency: 8.385744234800838e-6
allele num: 119250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1751C>T
  hgvsp: ENSP00000468541.1:p.Pro584Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1192C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1553C>T
  hgvsp: ENSP00000465139.1:p.Pro518Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1943C>T
  hgvsp: ENSP00000353826.2:p.Pro648Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1355C>T
  hgvsp: ENSP00000441523.1:p.Pro452Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1601C>T
  hgvsp: ENSP00000465585.1:p.Pro534Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1681C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6704
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro648Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-5696139-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696139
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696139
    reference: chr 19
allele count: 9
allele frequency: 7.551349174385823e-5
allele num: 119184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1549G>A
  hgvsp: ENSP00000465139.1:p.Glu517Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1351G>A
  hgvsp: ENSP00000441523.1:p.Glu451Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1939G>A
  hgvsp: ENSP00000353826.2:p.Glu647Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1188G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1747G>A
  hgvsp: ENSP00000468541.1:p.Glu583Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1597G>A
  hgvsp: ENSP00000465585.1:p.Glu533Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1677G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu647Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-5696140-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696140
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696140
    reference: chr 19
allele count: 7
allele frequency: 5.903287287692489e-5
allele num: 118578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1746C>T
  hgvsp: ENST00000593119.1:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1596C>T
  hgvsp: ENST00000585374.1:c.1596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1938C>T
  hgvsp: ENST00000360614.3:c.1938C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1187C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1350C>T
  hgvsp: ENST00000540670.2:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1548C>T
  hgvsp: ENST00000590729.1:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1676C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro646Pro
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

19-5696140-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696140
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696140
    reference: chr 19
allele count: 26
allele frequency: 2.192649564000067e-4
allele num: 118578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1746C>G
  hgvsp: ENST00000593119.1:c.1746C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1596C>G
  hgvsp: ENST00000585374.1:c.1596C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1187C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1548C>G
  hgvsp: ENST00000590729.1:c.1548C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1350C>G
  hgvsp: ENST00000540670.2:c.1350C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1938C>G
  hgvsp: ENST00000360614.3:c.1938C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1676C>G
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38282
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro646Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-5696145-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696145
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696145
    reference: chr 19
allele count: 1
allele frequency: 8.377314233056882e-6
allele num: 119370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1671A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1543A>G
  hgvsp: ENSP00000465139.1:p.Ile515Val
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1741A>G
  hgvsp: ENSP00000468541.1:p.Ile581Val
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1933A>G
  hgvsp: ENSP00000353826.2:p.Ile645Val
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1345A>G
  hgvsp: ENSP00000441523.1:p.Ile449Val
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1182A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1591A>G
  hgvsp: ENSP00000465585.1:p.Ile531Val
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile645Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

19-5696146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696146
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696146
    reference: chr 19
allele count: 24580
allele frequency: 2.055424548024016e-1
allele num: 119586
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1932C>T
  hgvsp: ENST00000360614.3:c.1932C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1542C>T
  hgvsp: ENST00000590729.1:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1590C>T
  hgvsp: ENST00000585374.1:c.1590C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1670C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1181C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1740C>T
  hgvsp: ENST00000593119.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1344C>T
  hgvsp: ENST00000540670.2:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 1480
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 679
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.75e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.75e1
  variant carriers: 1402
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.75e1
  variant carriers: 1148
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 8.75e1
  variant carriers: 1404
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.25e1
  variant carriers: 1201
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.25e1
  variant carriers: 1233
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 2.75e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 24655
  bin: 2.25e1
  variant carriers: 469
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 3.25e1
  variant carriers: 483
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.25e1
  variant carriers: 1052
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.75e1
  variant carriers: 537
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 9.75e1
  variant carriers: 5954
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 7.75e1
  variant carriers: 1464
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 805
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 8.25e1
  variant carriers: 1354
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4396
  bin: 6.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 7.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 13
hgvs: p.Thr644Thr
num of homozygotes: 2837
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-5696148-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696148
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696148
    reference: chr 19
allele count: 8
allele frequency: 6.693888479817926e-5
allele num: 119512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1179A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1668A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1540A>G
  hgvsp: ENSP00000465139.1:p.Thr514Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1588A>G
  hgvsp: ENSP00000465585.1:p.Thr530Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1342A>G
  hgvsp: ENSP00000441523.1:p.Thr448Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1930A>G
  hgvsp: ENSP00000353826.2:p.Thr644Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1738A>G
  hgvsp: ENSP00000468541.1:p.Thr580Ala
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr644Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-5696150-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696150
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696150
    reference: chr 19
allele count: 1
allele frequency: 8.365540664893172e-6
allele num: 119538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1736A>C
  hgvsp: ENSP00000468541.1:p.Asp579Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1666A>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1177A>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1928A>C
  hgvsp: ENSP00000353826.2:p.Asp643Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1538A>C
  hgvsp: ENSP00000465139.1:p.Asp513Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1586A>C
  hgvsp: ENSP00000465585.1:p.Asp529Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1340A>C
  hgvsp: ENSP00000441523.1:p.Asp447Ala
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13968
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp643Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-5696152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696152
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696152
    reference: chr 19
allele count: 7
allele frequency: 5.855192719486082e-5
allele num: 119552
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1926G>A
  hgvsp: ENST00000360614.3:c.1926G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1175G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1734G>A
  hgvsp: ENST00000593119.1:c.1734G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1664G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1536G>A
  hgvsp: ENST00000590729.1:c.1536G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1338G>A
  hgvsp: ENST00000540670.2:c.1338G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1584G>A
  hgvsp: ENST00000585374.1:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24855
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr642Thr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

19-5696153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696153
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696153
    reference: chr 19
allele count: 7
allele frequency: 5.856074422340087e-5
allele num: 119534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1663C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1925C>T
  hgvsp: ENSP00000353826.2:p.Thr642Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1174C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1535C>T
  hgvsp: ENSP00000465139.1:p.Thr512Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1337C>T
  hgvsp: ENSP00000441523.1:p.Thr446Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1733C>T
  hgvsp: ENSP00000468541.1:p.Thr578Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1583C>T
  hgvsp: ENSP00000465585.1:p.Thr528Met
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr642Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

19-5696153-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696153
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696153
    reference: chr 19
allele count: 1
allele frequency: 8.365820603342981e-6
allele num: 119534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1535C>G
  hgvsp: ENSP00000465139.1:p.Thr512Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1174C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1663C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1733C>G
  hgvsp: ENSP00000468541.1:p.Thr578Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1337C>G
  hgvsp: ENSP00000441523.1:p.Thr446Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1583C>G
  hgvsp: ENSP00000465585.1:p.Thr528Arg
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1925C>G
  hgvsp: ENSP00000353826.2:p.Thr642Arg
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13976
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr642Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-5696153-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696153
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696153
    reference: chr 19
allele count: 1
allele frequency: 8.365820603342981e-6
allele num: 119534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1535C>A
  hgvsp: ENSP00000465139.1:p.Thr512Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1583C>A
  hgvsp: ENSP00000465585.1:p.Thr528Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1733C>A
  hgvsp: ENSP00000468541.1:p.Thr578Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1663C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1925C>A
  hgvsp: ENSP00000353826.2:p.Thr642Lys
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1174C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1337C>A
  hgvsp: ENSP00000441523.1:p.Thr446Lys
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr642Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

19-5696154-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696154
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696154
    reference: chr 19
allele count: 3
allele frequency: 2.509158428263161e-5
allele num: 119562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1534A>G
  hgvsp: ENSP00000465139.1:p.Thr512Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1173A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1924A>G
  hgvsp: ENSP00000353826.2:p.Thr642Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1336A>G
  hgvsp: ENSP00000441523.1:p.Thr446Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1582A>G
  hgvsp: ENSP00000465585.1:p.Thr528Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1732A>G
  hgvsp: ENSP00000468541.1:p.Thr578Ala
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1662A>G
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr642Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-5696157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696157
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696157
    reference: chr 19
allele count: 601
allele frequency: 5.02567190139314e-3
allele num: 119586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1579G>A
  hgvsp: ENSP00000465585.1:p.Val527Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1170G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1921G>A
  hgvsp: ENSP00000353826.2:p.Val641Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1531G>A
  hgvsp: ENSP00000465139.1:p.Val511Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1333G>A
  hgvsp: ENSP00000441523.1:p.Val445Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1729G>A
  hgvsp: ENSP00000468541.1:p.Val577Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1659G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 24572
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27453
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val641Ile
num of homozygotes: 18
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

19-5696158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696158
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696158
    reference: chr 19
allele count: 3
allele frequency: 2.508864655114739e-5
allele num: 119576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1169C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1728C>T
  hgvsp: ENST00000593119.1:c.1728C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1578C>T
  hgvsp: ENST00000585374.1:c.1578C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1658C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1530C>T
  hgvsp: ENST00000590729.1:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1332C>T
  hgvsp: ENST00000540670.2:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1920C>T
  hgvsp: ENST00000360614.3:c.1920C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn640Asn
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-5696161-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696161
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696161
    reference: chr 19
allele count: 1
allele frequency: 8.363301831563101e-6
allele num: 119570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1725C>T
  hgvsp: ENST00000593119.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1575C>T
  hgvsp: ENST00000585374.1:c.1575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1329C>T
  hgvsp: ENST00000540670.2:c.1329C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1527C>T
  hgvsp: ENST00000590729.1:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1655C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1917C>T
  hgvsp: ENST00000360614.3:c.1917C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1166C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14094
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala639Ala
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

19-5696164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696164
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696164
    reference: chr 19
allele count: 150
allele frequency: 1.254327429632231e-3
allele num: 119586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1652G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1326G>A
  hgvsp: ENST00000540670.2:c.1326G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1163G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1914G>A
  hgvsp: ENST00000360614.3:c.1914G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1524G>A
  hgvsp: ENST00000590729.1:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1722G>A
  hgvsp: ENST00000593119.1:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1572G>A
  hgvsp: ENST00000585374.1:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 24510
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27595
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr638Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

19-5696165-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696165
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696165
    reference: chr 19
allele count: 1
allele frequency: 8.363022061652199e-6
allele num: 119574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1651C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1571C>T
  hgvsp: ENSP00000465585.1:p.Thr524Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1162C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1523C>T
  hgvsp: ENSP00000465139.1:p.Thr508Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1325C>T
  hgvsp: ENSP00000441523.1:p.Thr442Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1721C>T
  hgvsp: ENSP00000468541.1:p.Thr574Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1913C>T
  hgvsp: ENSP00000353826.2:p.Thr638Met
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr638Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

19-5696167-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696167
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696167
    reference: chr 19
allele count: 4
allele frequency: 3.344985031191985e-5
allele num: 119582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1569C>T
  hgvsp: ENST00000585374.1:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1323C>T
  hgvsp: ENST00000540670.2:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1160C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1521C>T
  hgvsp: ENST00000590729.1:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1911C>T
  hgvsp: ENST00000360614.3:c.1911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1719C>T
  hgvsp: ENST00000593119.1:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1649C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys637Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

19-5696173-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696173
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696173
    reference: chr 19
allele count: 1
allele frequency: 8.364840900726069e-6
allele num: 119548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1154C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1643C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1563C>G
  hgvsp: ENSP00000465585.1:p.Phe521Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1317C>G
  hgvsp: ENSP00000441523.1:p.Phe439Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1713C>G
  hgvsp: ENSP00000468541.1:p.Phe571Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1905C>G
  hgvsp: ENSP00000353826.2:p.Phe635Leu
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1515C>G
  hgvsp: ENSP00000465139.1:p.Phe505Leu
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe635Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-5696175-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696175
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696175
    reference: chr 19
allele count: 1
allele frequency: 8.363581620193032e-6
allele num: 119566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1152T>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1315T>A
  hgvsp: ENSP00000441523.1:p.Phe439Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1903T>A
  hgvsp: ENSP00000353826.2:p.Phe635Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1711T>A
  hgvsp: ENSP00000468541.1:p.Phe571Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1561T>A
  hgvsp: ENSP00000465585.1:p.Phe521Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1513T>A
  hgvsp: ENSP00000465139.1:p.Phe505Ile
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1641T>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe635Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-5696176-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696176
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696176
    reference: chr 19
allele count: 1
allele frequency: 8.364840900726069e-6
allele num: 119548
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1902G>T
  hgvsp: ENST00000360614.3:c.1902G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1560G>T
  hgvsp: ENST00000585374.1:c.1560G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1640G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1151G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1314G>T
  hgvsp: ENST00000540670.2:c.1314G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1512G>T
  hgvsp: ENST00000590729.1:c.1512G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1710G>T
  hgvsp: ENST00000593119.1:c.1710G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu634Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-5696181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696181
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696181
    reference: chr 19
allele count: 1
allele frequency: 8.369741709770836e-6
allele num: 119478
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897G>A
  hgvsp: ENSP00000353826.2:p.Val633Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309G>A
  hgvsp: ENSP00000441523.1:p.Val437Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705G>A
  hgvsp: ENSP00000468541.1:p.Val569Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507G>A
  hgvsp: ENSP00000465139.1:p.Val503Met
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555G>A
  hgvsp: ENSP00000465585.1:p.Val519Met
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14109
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val633Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

19-5696183-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696183
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696182
    reference: chr 19
allele count: 1
allele frequency: 8.373245805003851e-6
allele num: 119428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-3delC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-3delC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-3delC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-3delC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-3delC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-3delC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-3delC
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14104
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1897-3delC
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: TG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-5696186-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696186
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696186
    reference: chr 19
allele count: 1
allele frequency: 8.372544751251695e-6
allele num: 119438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-5C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-5C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-5C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-5C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-5C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-5C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-5C>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1897-5C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

19-5696189-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696189
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696190
    reference: chr 19
allele count: 1
allele frequency: 8.374928813105088e-6
allele num: 119404
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-9dupC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-9dupC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-9dupC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-9dupC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-9dupC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-9dupC
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-9dupC
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-5696189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696189
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696189
    reference: chr 19
allele count: 6
allele frequency: 5.024957287863053e-5
allele num: 119404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-8G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-8G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-8G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-8G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-8G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-8G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-8G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1897-8G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-5696190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696190
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696190
    reference: chr 19
allele count: 63
allele frequency: 5.276647067691844e-4
allele num: 119394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-9C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-9C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-9C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-9C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-9C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-9C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-9C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24044
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14153
  bin: 9.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26989
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-5696192-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696192
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696192
    reference: chr 19
allele count: 2
allele frequency: 1.67596829067994e-5
allele num: 119334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-11G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-11G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-11G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-11G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-11G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-11G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-11G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-5696193-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696193
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696193
    reference: chr 19
allele count: 10
allele frequency: 8.377454594196099e-5
allele num: 119368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-12C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-12C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-12C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-12C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-12C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-12C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-12C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-5696196-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696196
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696196
    reference: chr 19
allele count: 1
allele frequency: 8.374928813105088e-6
allele num: 119404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-15T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-15T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-15T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-15T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-15T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-15T>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-15T>G
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14107
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5591
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

19-5696199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696199
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696199
    reference: chr 19
allele count: 1
allele frequency: 8.377314233056882e-6
allele num: 119370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-18C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-18C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-18C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-18C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-18C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-18C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-18C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-5696204-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696204
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696204
    reference: chr 19
allele count: 1
allele frequency: 8.381386616601851e-6
allele num: 119312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-23C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-23C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-23C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-23C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-23C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-23C>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-23C>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14105
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-5696207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696207
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696207
    reference: chr 19
allele count: 41
allele frequency: 3.436771781588962e-4
allele num: 119298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-26C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-26C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-26C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-26C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-26C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-26C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-26C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-5696208-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696208
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696208
    reference: chr 19
allele count: 1
allele frequency: 8.383916294979712e-6
allele num: 119276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-27C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-27C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-27C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-27C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-27C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-27C>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-27C>G
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14122
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

19-5696213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696213
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696213
    reference: chr 19
allele count: 2
allele frequency: 1.676698915175802e-5
allele num: 119282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-32C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-32C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-32C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-32C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-32C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-32C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-32C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26519
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-5696215-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696215
    reference: chr 19
allele count: 2
allele frequency: 1.677317633640282e-5
allele num: 119238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-34G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-34G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-34G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-34G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-34G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-34G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-34G>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14126
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

19-5696215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696215
    reference: chr 19
allele count: 13
allele frequency: 1.090256461866184e-4
allele num: 119238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-34G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-34G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-34G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-34G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-34G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-34G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-34G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14126
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

19-5696215-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696215
    reference: chr 19
allele count: 1
allele frequency: 8.386588168201411e-6
allele num: 119238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-34G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-34G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-34G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-34G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-34G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-34G>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-34G>C
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

19-5696216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696216
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696216
    reference: chr 19
allele count: 8
allele frequency: 6.709045470555677e-5
allele num: 119242
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-35C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-35C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-35C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-35C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-35C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-35C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-35C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14121
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-5696219-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696219
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696219
    reference: chr 19
allele count: 1
allele frequency: 8.380262805041566e-6
allele num: 119328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-38A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-38A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-38A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-38A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-38A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-38A>G
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-38A>G
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23924
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

19-5696220-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696220
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696220
    reference: chr 19
allele count: 1
allele frequency: 8.38321345338095e-6
allele num: 119286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1635-39T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1555-39T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1146-39T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1897-39T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1705-39T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1507-39T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1309-39T>C
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14123
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

19-5696221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696221
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696221
    reference: chr 19
allele count: 2
allele frequency: 1.67619303038938e-5
allele num: 119318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1308+39G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1704+39G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1506+39G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1634+39G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1145+39G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1896+39G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1554+39G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14122
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-5696223-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696223
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696223
    reference: chr 19
allele count: 4
allele frequency: 3.352105122016626e-5
allele num: 119328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1145+37G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1896+37G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1554+37G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1308+37G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1634+37G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1704+37G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1506+37G>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14120
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS

19-5696228-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696228
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696228
    reference: chr 19
allele count: 1
allele frequency: 8.381948635418762e-6
allele num: 119304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1308+32G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1506+32G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1704+32G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1145+32G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1554+32G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1896+32G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1634+32G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-5696230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696230
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696230
    reference: chr 19
allele count: 1
allele frequency: 8.382510729613734e-6
allele num: 119296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1704+30C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1308+30C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1634+30C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1896+30C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1506+30C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1145+30C>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1554+30C>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9220
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-5696231-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696231
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696231
    reference: chr 19
allele count: 1
allele frequency: 8.381527114240214e-6
allele num: 119310
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1896+29G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1506+29G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1704+29G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1554+29G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1308+29G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1634+29G>T
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1145+29G>T
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-5696237-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696237
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696237
    reference: chr 19
allele count: 1
allele frequency: 8.379560575843403e-6
allele num: 119338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1506+23G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1308+23G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1554+23G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1634+23G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1896+23G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1145+23G>A
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1704+23G>A
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

19-5696238-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5696238
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5696238
    reference: chr 19
allele count: 1
allele frequency: 8.379139294811638e-6
allele num: 119344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000467808
  ensembl transcript: ENST00000590558
  gene symbol: LONP1
  hgvsc: ENST00000590558.1:c.*1145+22T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465139
  ensembl transcript: ENST00000590729
  gene symbol: LONP1
  hgvsc: ENST00000590729.1:c.1506+22T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000353826
  ensembl transcript: ENST00000360614
  gene symbol: LONP1
  hgvsc: ENST00000360614.3:c.1896+22T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000465585
  ensembl transcript: ENST00000585374
  gene symbol: LONP1
  hgvsc: ENST00000585374.1:c.1554+22T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000468541
  ensembl transcript: ENST00000593119
  gene symbol: LONP1
  hgvsc: ENST00000593119.1:c.1704+22T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl transcript: ENST00000587552
  gene symbol: LONP1
  hgvsc: ENST00000587552.1:n.1634+22T>C
  variant of: http://identifiers.org/hgnc/9479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196365
  ensembl protein: ENSP00000441523
  ensembl transcript: ENST00000540670
  gene symbol: LONP1
  hgvsc: ENST00000540670.2:c.1308+22T>C
  variant of: http://identifiers.org/hgnc/9479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 924
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 382
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.383034773445732e-3
allele num: 15184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.918978758735211e-5
allele num: 57812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

DP
type: SiteQuality
SIO_000300: 1.226016e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 1.671e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 924
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.729744689683803e-5
allele num: 57812
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.226016e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

FS
type: SiteQuality
SIO_000300: 1.671e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeQuality
all individuals: 167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5062
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 2.286401925391095e-3
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.226016e6

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

FS
type: SiteQuality
SIO_000300: 1.671e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeQuality
all individuals: 5176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.559097468188377e-5
allele num: 15246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.011326860841424e-4
allele num: 9888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58308
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.093e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.75e-1

DP
type: SiteQuality
SIO_000300: 1.240731e6

FS
type: SiteQuality
SIO_000300: 5.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4875
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.213368747233289e-4
allele num: 9036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 1.519e0

QD
type: SiteQuality
SIO_000300: 1.314e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

DP
type: SiteQuality
SIO_000300: 1.315243e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

GenotypeQuality
all individuals: 663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 426
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2875
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 52
allele frequency: 8.172245796008172e-4
allele num: 63630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 7.099751508697196e-4
allele num: 5634
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.792435920415845e-4
allele num: 11158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.044059302568386e-4
allele num: 9578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

QD
type: SiteQuality
SIO_000300: 1.302e1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.37152e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6568
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.92379082634303e-5
allele num: 11206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.132145206251762e-5
allele num: 63854
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

FS
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

DP
type: SiteQuality
SIO_000300: 1.378974e6

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.876264867743653e-5
allele num: 11266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.298e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.36e-2

QD
type: SiteQuality
SIO_000300: 1.272e1

FS
type: SiteQuality
SIO_000300: 3.115e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 1.389868e6

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55269859014968e-5
allele num: 64404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

DP
type: SiteQuality
SIO_000300: 1.477564e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

QD
type: SiteQuality
SIO_000300: 1.481e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

GenotypeQuality
all individuals: 230
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2021
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1931
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 251
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2854
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2195
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6390
bin: 6.75e1
variant carriers: 1

Other
type: Population
allele count: 20
allele frequency: 2.358490566037736e-2
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 3.663749236718909e-3
allele num: 9826
num of homozygotes: 0

East Asian
type: Population
allele count: 240
allele frequency: 2.826189354686764e-2
allele num: 8492
num of homozygotes: 2

Latino
type: Population
allele count: 365
allele frequency: 3.23066029385732e-2
allele num: 11298
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 141
allele frequency: 2.40532241555783e-2
allele num: 5862
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1821
allele frequency: 2.827464132662567e-2
allele num: 64404
num of homozygotes: 29

South Asian
type: Population
allele count: 258
allele frequency: 1.581657675331045e-2
allele num: 16312
num of homozygotes: 6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

QD
type: SiteQuality
SIO_000300: 1.481e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 1.477564e6

GenotypeQuality
all individuals: 2359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219512195121951e-4
allele num: 16400
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.263e1

DP
type: SiteQuality
SIO_000300: 1.472436e6

GenotypeQuality
all individuals: 6719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.087753967763848e-5
allele num: 64772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

QD
type: SiteQuality
SIO_000300: 1.263e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

DP
type: SiteQuality
SIO_000300: 1.472436e6

GenotypeQuality
all individuals: 39351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64772
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.472436e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 2358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.084515731030228e-5
allele num: 64840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.9396e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.647e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 1.477e1

DP
type: SiteQuality
SIO_000300: 1.474183e6

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2498
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 795
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6788
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.853430110044487e-4
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.253e0

MQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

DP
type: SiteQuality
SIO_000300: 1.480087e6

QD
type: SiteQuality
SIO_000300: 1.199e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53727901614143e-5
allele num: 65050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.834e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.55e-1

DP
type: SiteQuality
SIO_000300: 1.480888e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 1.477e0

VQSLOD
type: SiteQuality
SIO_000300: -9.529e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.326e0

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.171e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.481654e6

FS
type: SiteQuality
SIO_000300: 1.307e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.171e0

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

FS
type: SiteQuality
SIO_000300: 6.422e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

DP
type: SiteQuality
SIO_000300: 1.487464e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532520076012996e-5
allele num: 65252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.422e0

DP
type: SiteQuality
SIO_000300: 1.487464e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 39328
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.675081813931744e-4
allele num: 8556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

DP
type: SiteQuality
SIO_000300: 1.489184e6

FS
type: SiteQuality
SIO_000300: 3.752e0

QD
type: SiteQuality
SIO_000300: 1.32e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

GenotypeQuality
all individuals: 1053
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

FS
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

DP
type: SiteQuality
SIO_000300: 1.489678e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
all individuals: 6808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.505491937368544e-4
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.294e0

VQSLOD
type: SiteQuality
SIO_000300: -4.638e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.137e0

DP
type: SiteQuality
SIO_000300: 1.49024e6

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

GenotypeQuality
all individuals: 804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.012622720897616e-4
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.064946210194011e-5
allele num: 65254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212415130940834e-4
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.921e1

FS
type: SiteQuality
SIO_000300: 1.838e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.543e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 1.49957e6

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.053e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

FS
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 8.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.498865e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2630
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.611875326484416e-4
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.13195977434388e-5
allele num: 65232
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.503901e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.113e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

QD
type: SiteQuality
SIO_000300: 1.266e1

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 3
allele frequency: 2.982700338039372e-4
allele num: 10058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541164503899146e-5
allele num: 64886
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744591765526867e-4
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 3.49e0

DP
type: SiteQuality
SIO_000300: 1.510533e6

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.252e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: -2.01e1

FS
type: SiteQuality
SIO_000300: 6.0334e1

MQ
type: SiteQuality
SIO_000300: 5.893e1

GenotypeQuality
all individuals: 3083
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2180
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2643
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 38677
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6649
bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.00351385506889e-4
allele num: 64886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.595405232929164e-3
allele num: 6268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.293577981651376e-3
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.942334460131238e-5
allele num: 10058
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.510533e6

VQSLOD
type: SiteQuality
SIO_000300: -2.01e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

QD
type: SiteQuality
SIO_000300: 3.49e0

FS
type: SiteQuality
SIO_000300: 6.0334e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.252e0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531018433461939e-5
allele num: 65316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.08e-2

FS
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.502046e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.22e-1

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 12

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 34

GenotypeQuality
all individuals: 571
bin: 2.25e1
variant carriers: 22

GenotypeQuality
all individuals: 23280
bin: 9.75e1
variant carriers: 21373

GenotypeQuality
all individuals: 631
bin: 9.25e1
variant carriers: 40

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 21

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 37

GenotypeQuality
all individuals: 1393
bin: 8.25e1
variant carriers: 44

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 37

GenotypeQuality
all individuals: 1573
bin: 7.25e1
variant carriers: 44

GenotypeQuality
all individuals: 25194
bin: 6.25e1
variant carriers: 47

Other
type: Population
allele count: 171
allele frequency: 1.925675675675676e-1
allele num: 888
num of homozygotes: 16

European (Non-Finnish)
type: Population
allele count: 15811
allele frequency: 2.415368163764131e-1
allele num: 65460
num of homozygotes: 1976

South Asian
type: Population
allele count: 2215
allele frequency: 1.342586980240029e-1
allele num: 16498
num of homozygotes: 169

African
type: Population
allele count: 2590
allele frequency: 2.540211847783445e-1
allele num: 10196
num of homozygotes: 332

European (Finnish)
type: Population
allele count: 803
allele frequency: 1.235764850723299e-1
allele num: 6498
num of homozygotes: 51

Latino
type: Population
allele count: 2226
allele frequency: 1.936325678496869e-1
allele num: 11496
num of homozygotes: 245

East Asian
type: Population
allele count: 764
allele frequency: 8.935672514619883e-2
allele num: 8550
num of homozygotes: 48

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.574e0

FS
type: SiteQuality
SIO_000300: 5.27e-1

DP
type: SiteQuality
SIO_000300: 2.653022e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.55e-2

QD
type: SiteQuality
SIO_000300: 1.389e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeQuality
all individuals: 5659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13973
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.174311926605505e-5
allele num: 65400
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.821253191907288e-5
allele num: 10182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.540357362908195e-4
allele num: 6492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.171e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

DP
type: SiteQuality
SIO_000300: 1.964138e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27623
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529192280637367e-5
allele num: 65394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-1

DP
type: SiteQuality
SIO_000300: 1.964034e6

MQ
type: SiteQuality
SIO_000300: 5.886e1

FS
type: SiteQuality
SIO_000300: 2.685e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.959e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5709
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13975
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.965408805031447e-4
allele num: 10176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.33590282644242e-4
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.530456075910621e-4
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529005229197884e-5
allele num: 65402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.236e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.964848e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 877
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13976
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2284
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.916420845624386e-4
allele num: 10170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529192280637367e-5
allele num: 65394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

FS
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

DP
type: SiteQuality
SIO_000300: 1.964955e6

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529192280637367e-5
allele num: 65394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.311e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

DP
type: SiteQuality
SIO_000300: 1.964955e6

GenotypeQuality
all individuals: 13976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529192280637367e-5
allele num: 65394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.964955e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13972
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2564
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818402230573403e-4
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

DP
type: SiteQuality
SIO_000300: 1.964866e6

QD
type: SiteQuality
SIO_000300: 1.044e1

FS
type: SiteQuality
SIO_000300: 3.207e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14444
bin: 9.75e1
variant carriers: 581

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 337
allele frequency: 3.936915887850467e-2
allele num: 8560
num of homozygotes: 9

Latino
type: Population
allele count: 214
allele frequency: 1.859252823631625e-2
allele num: 11510
num of homozygotes: 7

Other
type: Population
allele count: 5
allele frequency: 5.643340857787811e-3
allele num: 886
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.911591355599214e-4
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528584530724549e-5
allele num: 65420
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 2.364209505334627e-3
allele num: 16496
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.74e-2

DP
type: SiteQuality
SIO_000300: 1.9978e6

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 1.207e1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 221
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14097
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.828975820719482e-5
allele num: 10174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528724737823707e-5
allele num: 65414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.502e0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

QD
type: SiteQuality
SIO_000300: 1.11e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.970137e6

GenotypeQuality
all individuals: 3126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5735
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.83477576711251e-5
allele num: 10168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.151e0

DP
type: SiteQuality
SIO_000300: 1.970183e6

MQ
type: SiteQuality
SIO_000300: 5.882e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 1.548e1

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14197
bin: 9.75e1
variant carriers: 150

GenotypeQuality
all individuals: 905
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 1.895618674901397e-3
allele num: 65414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.343293954134816e-4
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.895067793279622e-4
allele num: 10178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.835423676965433e-3
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.50385423966363e-4
allele num: 8562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.18e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

DP
type: SiteQuality
SIO_000300: 1.976347e6

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14114
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

DP
type: SiteQuality
SIO_000300: 1.971184e6

FS
type: SiteQuality
SIO_000300: 9.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

QD
type: SiteQuality
SIO_000300: 1.553e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
all individuals: 925
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14113
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2285
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528864970645792e-5
allele num: 65408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.964636542239686e-4
allele num: 10180
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.970925e6

FS
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.154e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529145513487063e-5
allele num: 65396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.736e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

DP
type: SiteQuality
SIO_000300: 1.969696e6

FS
type: SiteQuality
SIO_000300: 8.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

QD
type: SiteQuality
SIO_000300: 2.175e1

GenotypeQuality
all individuals: 2276
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27532
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 959
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.969231e6

QD
type: SiteQuality
SIO_000300: 1.209e1

FS
type: SiteQuality
SIO_000300: 6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 27485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5684
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5733e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.262e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

DP
type: SiteQuality
SIO_000300: 1.969151e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.089e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 27238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65344
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.088e1

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.259e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

DP
type: SiteQuality
SIO_000300: 1.966689e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 2.557e0

GenotypeQuality
all individuals: 284
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530971554548516e-5
allele num: 65318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

FS
type: SiteQuality
SIO_000300: 7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

DP
type: SiteQuality
SIO_000300: 1.965752e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

GenotypeQuality
all individuals: 292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27045
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14105
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530877805333578e-5
allele num: 65322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.057e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 1.614e0

VQSLOD
type: SiteQuality
SIO_000300: -1.165e0

MQ
type: SiteQuality
SIO_000300: 5.307e1

DP
type: SiteQuality
SIO_000300: 1.964804e6

QD
type: SiteQuality
SIO_000300: 9.5e0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1863
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26951
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.854158454867954e-5
allele num: 10148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.126e1

FS
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 1.964194e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14107
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1863
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819725827975252e-4
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.594180704441041e-5
allele num: 65300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

QD
type: SiteQuality
SIO_000300: 1.126e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

DP
type: SiteQuality
SIO_000300: 1.964194e6

GenotypeQuality
all individuals: 2566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213150551983501e-4
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 7.656733331291537e-4
allele num: 65302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.739432944859976e-4
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.051893408134642e-3
allele num: 8556
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.355e1

DP
type: SiteQuality
SIO_000300: 1.965984e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14110
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1864
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.064100992768722e-5
allele num: 65272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 1.963277e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

FS
type: SiteQuality
SIO_000300: 6.221e0

QD
type: SiteQuality
SIO_000300: 1.068e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27009
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14115
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 3088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.609149417289963e-4
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.861932938856015e-5
allele num: 10140
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.658609809147444e-5
allele num: 65286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.963587e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.249e1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

GenotypeQuality
all individuals: 297
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531252871099133e-5
allele num: 65306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

FS
type: SiteQuality
SIO_000300: 8.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

DP
type: SiteQuality
SIO_000300: 1.962576e6

VQSLOD
type: SiteQuality
SIO_000300: 1.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.57e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14106
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5556
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.863878477017163e-5
allele num: 10138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65286
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.961661e6

QD
type: SiteQuality
SIO_000300: 1.4e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.094e0

FS
type: SiteQuality
SIO_000300: 7.292e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.078e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.58e-1

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5528
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532238293699436e-5
allele num: 65264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.845e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.124e-1

DP
type: SiteQuality
SIO_000300: 1.960463e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

QD
type: SiteQuality
SIO_000300: 1.763e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14139
bin: 9.75e1
variant carriers: 40

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65248
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73973556019485e-4
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 3.75345713156855e-3
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.361e1

FS
type: SiteQuality
SIO_000300: 5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

DP
type: SiteQuality
SIO_000300: 1.960193e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.959006e6

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 1.507e0

QD
type: SiteQuality
SIO_000300: 1.465e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.145e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

GenotypeQuality
all individuals: 310
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14124
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5508
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.740038280842179e-4
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.684e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 2.273e1

DP
type: SiteQuality
SIO_000300: 1.958151e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: -2.116e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 326
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.339181286549708e-4
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65224
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.958096e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 1.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.281e1

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5504
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.665889856494542e-5
allele num: 65224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.351610095735422e-4
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.966185485465691e-4
allele num: 10114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

FS
type: SiteQuality
SIO_000300: 1.227e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

DP
type: SiteQuality
SIO_000300: 1.958096e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
all individuals: 317
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

DP
type: SiteQuality
SIO_000300: 1.958096e6

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 1.227e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 1150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5508
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.20104278484895e-5
allele num: 65210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.679e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 1.236e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.927e1

VQSLOD
type: SiteQuality
SIO_000300: -2.309e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.958511e6

GenotypeQuality
all individuals: 26538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1860
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65278
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.558e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.957702e6

QD
type: SiteQuality
SIO_000300: 8.73e0

GenotypeQuality
all individuals: 312
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532426137060194e-5
allele num: 65256
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 2.513e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.296e0

FS
type: SiteQuality
SIO_000300: 8.56e-1

DP
type: SiteQuality
SIO_000300: 1.957424e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 26302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65276
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.708e0

DP
type: SiteQuality
SIO_000300: 1.957359e6

QD
type: SiteQuality
SIO_000300: 1.337e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.604e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.618e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531956614988664e-5
allele num: 65276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.610057421263268e-4
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.326e0

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 9.59e0

DP
type: SiteQuality
SIO_000300: 1.957966e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.824e0

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14125
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

QD
type: SiteQuality
SIO_000300: 1.436e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 1.601e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.342e0

DP
type: SiteQuality
SIO_000300: 1.955478e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.879470460383324e-5
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.137e0

MQRankSum
type: SiteQuality
SIO_000300: -1.543e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.954924e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.684e0

FS
type: SiteQuality
SIO_000300: 7.458e0

QD
type: SiteQuality
SIO_000300: 6.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.841e1

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1869
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.875567845151097e-5
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 1.955458e6

FS
type: SiteQuality
SIO_000300: 7.458e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 6.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.365e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.33e-1

GenotypeQuality
all individuals: 565
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.955372e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

QD
type: SiteQuality
SIO_000300: 9.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1