12-95877034-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877034
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877034
    reference: chr 12
allele count: 4
allele frequency: 3.320549218840796e-5
allele num: 120462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.195A>G
  hgvsp: ENST00000550777.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.152A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.231A>G
  hgvsp: ENST00000553151.1:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.303A>G
  hgvsp: ENST00000546753.1:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.300A>G
  hgvsp: ENST00000551840.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.387A>G
  hgvsp: ENST00000549502.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2621A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.303A>G
  hgvsp: ENST00000535095.1:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.303A>G
  hgvsp: ENST00000323666.5:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4400
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys101Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

12-95877034-A-AAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877034
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877037
    reference: chr 12
allele count: 3
allele frequency: 2.490411914130597e-5
allele num: 120462
alternate allele: AAAG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.245_247dupAGA
  hgvsp: ENSP00000449004.1:p.Lys82dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.401_403dupAGA
  hgvsp: ENSP00000448370.1:p.Lys134dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2607_257-2605dupAGA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.317_319dupAGA
  hgvsp: ENSP00000325312.5:p.Lys106dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.317_319dupAGA
  hgvsp: ENSP00000446052.1:p.Lys106dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.317_319dupAGA
  hgvsp: ENSP00000448169.1:p.Lys106dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.314_316dupAGA
  hgvsp: ENSP00000450063.1:p.Lys105dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.166_168dupAGA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.209_211dupAGA
  hgvsp: ENSP00000448614.1:p.Lys70dup
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26495
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys106dup
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

12-95877034-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877034
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877031
    reference: chr 12
allele count: 20
allele frequency: 1.660274609420398e-4
allele num: 120462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.314_316delAGA
  hgvsp: ENSP00000450063.1:p.Lys105del
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.401_403delAGA
  hgvsp: ENSP00000448370.1:p.Lys134del
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.317_319delAGA
  hgvsp: ENSP00000446052.1:p.Lys106del
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.245_247delAGA
  hgvsp: ENSP00000449004.1:p.Lys82del
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2607_257-2605delAGA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.209_211delAGA
  hgvsp: ENSP00000448614.1:p.Lys70del
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.166_168delAGA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.317_319delAGA
  hgvsp: ENSP00000448169.1:p.Lys106del
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.317_319delAGA
  hgvsp: ENSP00000325312.5:p.Lys106del
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16909
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26495
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4400
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys106del
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: AAAG
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

12-95877050-A-AGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877050
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877053
    reference: chr 12
allele count: 2
allele frequency: 1.705378764623623e-5
allele num: 117276
alternate allele: AGAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.171_173dupGGA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.406_408dupGGA
  hgvsp: ENSP00000448370.1:p.Gly136dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.214_216dupGGA
  hgvsp: ENSP00000448614.1:p.Gly72dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.319_321dupGGA
  hgvsp: ENSP00000450063.1:p.Gly107dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.250_252dupGGA
  hgvsp: ENSP00000449004.1:p.Gly84dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.322_324dupGGA
  hgvsp: ENSP00000448169.1:p.Gly108dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.322_324dupGGA
  hgvsp: ENSP00000325312.5:p.Gly108dup
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2602_257-2600dupGGA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.322_324dupGGA
  hgvsp: ENSP00000446052.1:p.Gly108dup
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4739
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly108dup
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

12-95877054-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877054
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877054
    reference: chr 12
allele count: 1
allele frequency: 8.598156555234557e-6
allele num: 116304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.172G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.320G>A
  hgvsp: ENSP00000450063.1:p.Gly107Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.407G>A
  hgvsp: ENSP00000448370.1:p.Gly136Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.251G>A
  hgvsp: ENSP00000449004.1:p.Gly84Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.323G>A
  hgvsp: ENSP00000446052.1:p.Gly108Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.323G>A
  hgvsp: ENSP00000448169.1:p.Gly108Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.215G>A
  hgvsp: ENSP00000448614.1:p.Gly72Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2601G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.323G>A
  hgvsp: ENSP00000325312.5:p.Gly108Glu
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4320
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly108Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

12-95877056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877056
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877056
    reference: chr 12
allele count: 7
allele frequency: 6.064596617687829e-5
allele num: 115424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217C>T
  hgvsp: ENSP00000448614.1:p.Pro73Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409C>T
  hgvsp: ENSP00000448370.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325C>T
  hgvsp: ENSP00000446052.1:p.Pro109Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325C>T
  hgvsp: ENSP00000325312.5:p.Pro109Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322C>T
  hgvsp: ENSP00000450063.1:p.Pro108Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.174C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325C>T
  hgvsp: ENSP00000448169.1:p.Arg109Ter
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253C>T
  hgvsp: ENSP00000449004.1:p.Pro85Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2599C>T
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14107
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg109Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

12-95877059-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877059
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877059
    reference: chr 12
allele count: 2
allele frequency: 1.763077628307974e-5
allele num: 113438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+3T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+3T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+3T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2596T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+3T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+3T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+3T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+3T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.177T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
hgvs: c.325+3T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-95877061-G-GTTTATTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877061
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877068
    reference: chr 12
allele count: 2
allele frequency: 1.786097020790169e-5
allele num: 111976
alternate allele: GTTTATTT
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+6_322+7insTTATTTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+6_325+7insTTATTTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.180_181insTTATTTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+6_409+7insTTATTTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+6_325+7insTTATTTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+6_217+7insTTATTTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+6_325+7insTTATTTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+6_253+7insTTATTTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 8.25e1
  variant carriers: 0
hgvs: c.325+6_325+7insTTATTTT
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-95877061-G-GTTTATTTTATCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877061
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877073
    reference: chr 12
allele count: 2
allele frequency: 1.786097020790169e-5
allele num: 111976
alternate allele: GTTTATTTTATCT
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11715
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 1
hgvs: c.325+6_325+7insTTATTTTATCTT
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

12-95877062-TGTCTTAAGTTAATG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877062
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877048
    reference: chr 12
allele count: 2
allele frequency: 1.794333494823348e-5
allele num: 111462
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 9.25e1
  variant carriers: 0
hgvs: c.325+7_325+20delGTCTTAAGTTAATG
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: TGTCTTAAGTTAATG
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

12-95877063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877063
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877063
    reference: chr 12
allele count: 16
allele frequency: 1.449695563931574e-4
allele num: 110368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+7G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.181G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+7G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+7G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+7G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+7G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+7G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2592G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+7G>A
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20199
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
hgvs: c.325+7G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

12-95877065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877065
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877065
    reference: chr 12
allele count: 2
allele frequency: 1.82996010686967e-5
allele num: 109292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+9C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+9C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+9C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.183C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+9C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+9C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+9C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2590C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+9C>T
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19397
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-95877069-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877069
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877069
    reference: chr 12
allele count: 4
allele frequency: 3.713675610435428e-5
allele num: 107710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2586A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+13A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.187A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+13A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+13A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+13A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+13A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+13A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+13A>T
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

12-95877070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877070
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877070
    reference: chr 12
allele count: 1
allele frequency: 9.365225046357864e-6
allele num: 106778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+14G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+14G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2585G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+14G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+14G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+14G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+14G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.188G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+14G>A
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

12-95877072-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877072
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877071
    reference: chr 12
allele count: 1
allele frequency: 9.492168960607498e-6
allele num: 105350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.192delA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+18delA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2581delA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+18delA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+18delA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+18delA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+18delA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+18delA
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+18delA
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: TA
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

12-95877076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877076
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877076
    reference: chr 12
allele count: 1
allele frequency: 9.598218570633291e-6
allele num: 104186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+20G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+20G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+20G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.194G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+20G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+20G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+20G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+20G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2579G>A
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

12-95877080-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877080
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877080
    reference: chr 12
allele count: 1
allele frequency: 9.740702499464262e-6
allele num: 102662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+24A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+24A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+24A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2575A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+24A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.198A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+24A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+24A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+24A>T
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20500
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

12-95877083-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877083
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877083
    reference: chr 12
allele count: 1
allele frequency: 9.98043834085193e-6
allele num: 100196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+27G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+27G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+27G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+27G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+27G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+27G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.201G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2572G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+27G>T
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21767
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

12-95877085-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877085
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877085
    reference: chr 12
allele count: 2
allele frequency: 2.003445926994431e-5
allele num: 99828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+29T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+29T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+29T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2570T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+29T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+29T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+29T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+29T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.203T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

12-95877087-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877087
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877087
    reference: chr 12
allele count: 5
allele frequency: 5.039103442715472e-5
allele num: 99224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+31T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+31T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+31T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.205T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+31T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2568T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+31T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+31T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+31T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

12-95877091-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877091
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877093
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 96112
alternate allele: ATT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2564_257-2563insTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+35_322+36insTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+35_325+36insTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.209_210insTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+35_325+36insTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+35_253+36insTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+35_217+36insTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+35_325+36insTT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+35_409+36insTT
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4230
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

12-95877092-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877092
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877092
    reference: chr 12
allele count: 1
allele frequency: 1.046243984097091e-5
allele num: 95580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+36G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+36G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+36G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+36G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+36G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+36G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.210G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+36G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2563G>T
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23197
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8000
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

12-95877095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877095
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877095
    reference: chr 12
allele count: 1
allele frequency: 1.065938985652461e-5
allele num: 93814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2560G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+39G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+39G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+39G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+39G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+39G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.213G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+39G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+39G>A
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-95877108-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95877108
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95877108
    reference: chr 12
allele count: 1
allele frequency: 1.305721672368318e-5
allele num: 76586
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.325+52C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.409+52C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.322+52C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-2547C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000549136
  gene symbol: METAP2
  hgvsc: ENST00000549136.1:n.226C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.217+52C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.325+52C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.253+52C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.325+52C>T
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17667
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16284
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4807
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6275
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

12-95878569-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95878569
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95878569
    reference: chr 12
allele count: 1
allele frequency: 9.365049634763064e-5
allele num: 10678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-1155T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-1086T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-1086T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-1086T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-1086T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-1086T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-1086T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-1086T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

12-95878579-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95878579
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95878580
    reference: chr 12
allele count: 1198
allele frequency: 1.316483516483516e-1
allele num: 9100
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-1067dupT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-1067dupT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-1067dupT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-1067dupT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-1067dupT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-1067dupT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-1067dupT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.-31dupT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-1136dupT
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 8
num of homozygotes: 62
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

12-95878579-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95878579
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95878578
    reference: chr 12
allele count: 20
allele frequency: 2.197802197802198e-3
allele num: 9100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.-31delT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-1067delT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-1067delT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-1067delT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-1067delT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-1067delT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-1136delT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-1067delT
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-1067delT
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: AT
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

12-95878668-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95878668
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95878668
    reference: chr 12
allele count: 3
allele frequency: 2.790178571428571e-4
allele num: 10752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-1056G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.31+19G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-987G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-987G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-987G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-987G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-987G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-987G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-987G>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

12-95879605-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879605
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879605
    reference: chr 12
allele count: 1
allele frequency: 8.526312199447495e-6
allele num: 117284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-50T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-50T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-50T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-119T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-50T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-50T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.21T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.32-50T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-50T>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-50T>A
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/12-95879625-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879625
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879625
    reference: chr 12
allele count: 1
allele frequency: 8.474001762592366e-6
allele num: 118008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-30A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-30A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-99A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.41A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-30A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-30A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-30A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-30A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.32-30A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-30A>C
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

12-95879635-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879635
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879635
    reference: chr 12
allele count: 4
allele frequency: 3.366323301689894e-5
allele num: 118824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-20G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-20G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-20G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-89G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.51G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-20G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.32-20G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-20G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-20G>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-20G>T
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

12-95879637-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879637
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879637
    reference: chr 12
allele count: 2
allele frequency: 1.679627794480743e-5
allele num: 119074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-87T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-18T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-18T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-18T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.53T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-18T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-18T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-18T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-18T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.32-18T>G
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8039
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/12-95879640-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879640
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879640
    reference: chr 12
allele count: 2
allele frequency: 1.675996379847819e-5
allele num: 119332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.32-15A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-84A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-15A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.56A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-15A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-15A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-15A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-15A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-15A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-15A>C
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24665
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

12-95879642-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879642
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879642
    reference: chr 12
allele count: 3
allele frequency: 2.510124167475484e-5
allele num: 119516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.58T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-13T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-13T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-13T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-13T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-13T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-13T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.32-13T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-13T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-82T>G
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

12-95879645-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879645
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879645
    reference: chr 12
allele count: 1
allele frequency: 8.351288603831571e-6
allele num: 119742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.410-10T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.326-10T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.61T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.326-10T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.257-10T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.323-10T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.218-10T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.32-10T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.254-10T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-79T>G
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10052
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

12-95879657-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879657
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879657
    reference: chr 12
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.34A>G
  hgvsp: ENSP00000447661.1:p.Lys12Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.325A>G
  hgvsp: ENSP00000450063.1:p.Lys109Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.328A>G
  hgvsp: ENSP00000446052.1:p.Lys110Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.328A>G
  hgvsp: ENSP00000325312.5:p.Lys110Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-67A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.259A>G
  hgvsp: ENSP00000261220.9:p.Lys87Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.412A>G
  hgvsp: ENSP00000448370.1:p.Lys138Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.220A>G
  hgvsp: ENSP00000448614.1:p.Lys74Glu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.73A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.256A>G
  hgvsp: ENSP00000449004.1:p.Lys86Glu
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys110Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-95879658-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879658
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879658
    reference: chr 12
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.413A>C
  hgvsp: ENSP00000448370.1:p.Lys138Thr
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.221A>C
  hgvsp: ENSP00000448614.1:p.Lys74Thr
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-66A>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.329A>C
  hgvsp: ENSP00000325312.5:p.Lys110Thr
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.35A>C
  hgvsp: ENSP00000447661.1:p.Lys12Thr
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.329A>C
  hgvsp: ENSP00000446052.1:p.Lys110Thr
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.257A>C
  hgvsp: ENSP00000449004.1:p.Lys86Thr
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.326A>C
  hgvsp: ENSP00000450063.1:p.Lys109Thr
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.260A>C
  hgvsp: ENSP00000261220.9:p.Lys87Thr
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.74A>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10286
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys110Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/12-95879677-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879677
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879677
    reference: chr 12
allele count: 5
allele frequency: 4.124936063491016e-5
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.432C>A
  hgvsp: ENST00000549502.1:c.432C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.348C>A
  hgvsp: ENST00000323666.5:c.348C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.345C>A
  hgvsp: ENST00000551840.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.54C>A
  hgvsp: ENST00000549808.1:c.54C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-47C>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.279C>A
  hgvsp: ENST00000261220.9:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.93C>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.240C>A
  hgvsp: ENST00000550777.1:c.240C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.276C>A
  hgvsp: ENST00000553151.1:c.276C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.348C>A
  hgvsp: ENST00000535095.1:c.348C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3766
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro116Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-95879680-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879680
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879680
    reference: chr 12
allele count: 17
allele frequency: 1.40217749917519e-4
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.279A>G
  hgvsp: ENST00000553151.1:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.351A>G
  hgvsp: ENST00000323666.5:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.57A>G
  hgvsp: ENST00000549808.1:c.57A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.351A>G
  hgvsp: ENST00000535095.1:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.282A>G
  hgvsp: ENST00000261220.9:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.435A>G
  hgvsp: ENST00000549502.1:c.435A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.348A>G
  hgvsp: ENST00000551840.1:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.243A>G
  hgvsp: ENST00000550777.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.96A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-44A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser117Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS

12-95879681-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879681
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879681
    reference: chr 12
allele count: 201
allele frequency: 1.657649930725077e-3
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-43G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.97G>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.280G>C
  hgvsp: ENSP00000449004.1:p.Val94Leu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.244G>C
  hgvsp: ENSP00000448614.1:p.Val82Leu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.349G>C
  hgvsp: ENSP00000450063.1:p.Val117Leu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.352G>C
  hgvsp: ENSP00000446052.1:p.Val118Leu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.436G>C
  hgvsp: ENSP00000448370.1:p.Val146Leu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.58G>C
  hgvsp: ENSP00000447661.1:p.Val20Leu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.283G>C
  hgvsp: ENSP00000261220.9:p.Val95Leu
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.352G>C
  hgvsp: ENSP00000325312.5:p.Val118Leu
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10445
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 9.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val118Leu
num of homozygotes: 2
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

12-95879687-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879687
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879687
    reference: chr 12
allele count: 74
allele frequency: 6.101281269066504e-4
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.355A>G
  hgvsp: ENSP00000450063.1:p.Ile119Val
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.289A>G
  hgvsp: ENSP00000261220.9:p.Ile97Val
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.64A>G
  hgvsp: ENSP00000447661.1:p.Ile22Val
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.358A>G
  hgvsp: ENSP00000325312.5:p.Ile120Val
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.358A>G
  hgvsp: ENSP00000446052.1:p.Ile120Val
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-37A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.250A>G
  hgvsp: ENSP00000448614.1:p.Ile84Val
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.442A>G
  hgvsp: ENSP00000448370.1:p.Ile148Val
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.286A>G
  hgvsp: ENSP00000449004.1:p.Ile96Val
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.103A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10487
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile120Val
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

12-95879696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879696
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879696
    reference: chr 12
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.367C>T
  hgvsp: ENST00000535095.1:c.367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-28C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.73C>T
  hgvsp: ENST00000549808.1:c.73C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.259C>T
  hgvsp: ENST00000550777.1:c.259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.298C>T
  hgvsp: ENST00000261220.9:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.367C>T
  hgvsp: ENST00000323666.5:c.367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.295C>T
  hgvsp: ENST00000553151.1:c.295C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.364C>T
  hgvsp: ENST00000551840.1:c.364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.112C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.451C>T
  hgvsp: ENST00000549502.1:c.451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5567
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu123Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

12-95879706-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879706
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879706
    reference: chr 12
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.269A>G
  hgvsp: ENSP00000448614.1:p.Asn90Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.377A>G
  hgvsp: ENSP00000446052.1:p.Asn126Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.377A>G
  hgvsp: ENSP00000325312.5:p.Asn126Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.305A>G
  hgvsp: ENSP00000449004.1:p.Asn102Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.461A>G
  hgvsp: ENSP00000448370.1:p.Asn154Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.83A>G
  hgvsp: ENSP00000447661.1:p.Asn28Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-18A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.374A>G
  hgvsp: ENSP00000450063.1:p.Asn125Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.308A>G
  hgvsp: ENSP00000261220.9:p.Asn103Ser
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.122A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14519
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn126Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

12-95879719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879719
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879719
    reference: chr 12
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.282C>T
  hgvsp: ENST00000550777.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.318C>T
  hgvsp: ENST00000553151.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.326-5C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.387C>T
  hgvsp: ENST00000551840.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.390C>T
  hgvsp: ENST00000323666.5:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.96C>T
  hgvsp: ENST00000549808.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.390C>T
  hgvsp: ENST00000535095.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448370
  ensembl transcript: ENST00000549502
  gene symbol: METAP2
  hgvsc: ENST00000549502.1:c.474C>T
  hgvsp: ENST00000549502.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.135C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.321C>T
  hgvsp: ENST00000261220.9:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 8.75e1
  variant carriers: 0
hgvs: c.326-5C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-95879734-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879734
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879734
    reference: chr 12
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.405C>G
  hgvsp: ENSP00000325312.5:p.Cys135Trp
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.405C>G
  hgvsp: ENSP00000446052.1:p.Cys135Trp
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.150C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.333C>G
  hgvsp: ENSP00000449004.1:p.Cys111Trp
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.297C>G
  hgvsp: ENSP00000448614.1:p.Cys99Trp
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.336C>G
  hgvsp: ENSP00000448169.1:p.Cys112Trp
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.336C>G
  hgvsp: ENSP00000261220.9:p.Cys112Trp
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.111C>G
  hgvsp: ENSP00000447661.1:p.Cys37Trp
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.402C>G
  hgvsp: ENSP00000450063.1:p.Cys134Trp
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys135Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

12-95879734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879734
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879734
    reference: chr 12
allele count: 6298
allele frequency: 5.191657736377875e-2
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.402C>T
  hgvsp: ENST00000551840.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.405C>T
  hgvsp: ENST00000323666.5:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.336C>T
  hgvsp: ENST00000546753.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.111C>T
  hgvsp: ENST00000549808.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.297C>T
  hgvsp: ENST00000550777.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.336C>T
  hgvsp: ENST00000261220.9:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.150C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.405C>T
  hgvsp: ENST00000535095.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.333C>T
  hgvsp: ENST00000553151.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 10387
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 9.75e1
  variant carriers: 4273
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 4.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 5.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 4.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 5.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.75e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 6.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 6.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.75e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys135Cys
num of homozygotes: 224
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-95879737-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879737
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879737
    reference: chr 12
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.339A>G
  hgvsp: ENST00000261220.9:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.153A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.300A>G
  hgvsp: ENST00000550777.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.405A>G
  hgvsp: ENST00000551840.1:c.405A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.336A>G
  hgvsp: ENST00000553151.1:c.336A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.339A>G
  hgvsp: ENST00000546753.1:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.114A>G
  hgvsp: ENST00000549808.1:c.114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.408A>G
  hgvsp: ENST00000323666.5:c.408A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.408A>G
  hgvsp: ENST00000535095.1:c.408A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3630
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu136Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

12-95879740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879740
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879740
    reference: chr 12
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.303C>T
  hgvsp: ENST00000550777.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.408C>T
  hgvsp: ENST00000551840.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.342C>T
  hgvsp: ENST00000261220.9:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.339C>T
  hgvsp: ENST00000553151.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.411C>T
  hgvsp: ENST00000323666.5:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.117C>T
  hgvsp: ENST00000549808.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.411C>T
  hgvsp: ENST00000535095.1:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.342C>T
  hgvsp: ENST00000546753.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.156C>T
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3631
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr137Tyr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

12-95879747-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879747
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879747
    reference: chr 12
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.124A>G
  hgvsp: ENSP00000447661.1:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.349A>G
  hgvsp: ENSP00000261220.9:p.Thr117Ala
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.418A>G
  hgvsp: ENSP00000325312.5:p.Thr140Ala
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.415A>G
  hgvsp: ENSP00000450063.1:p.Thr139Ala
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.349A>G
  hgvsp: ENSP00000448169.1:p.Thr117Ala
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.418A>G
  hgvsp: ENSP00000446052.1:p.Thr140Ala
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.310A>G
  hgvsp: ENSP00000448614.1:p.Thr104Ala
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.163A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.346A>G
  hgvsp: ENSP00000449004.1:p.Thr116Ala
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr140Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

12-95879756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879756
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879756
    reference: chr 12
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.355G>A
  hgvsp: ENSP00000449004.1:p.Gly119Arg
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.319G>A
  hgvsp: ENSP00000448614.1:p.Gly107Arg
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.172G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.427G>A
  hgvsp: ENSP00000325312.5:p.Gly143Arg
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.358G>A
  hgvsp: ENSP00000448169.1:p.Gly120Arg
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.427G>A
  hgvsp: ENSP00000446052.1:p.Gly143Arg
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.424G>A
  hgvsp: ENSP00000450063.1:p.Gly142Arg
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.358G>A
  hgvsp: ENSP00000261220.9:p.Gly120Arg
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.133G>A
  hgvsp: ENSP00000447661.1:p.Gly45Arg
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly143Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

12-95879764-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879764
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879764
    reference: chr 12
allele count: 2
allele frequency: 1.651936896010573e-5
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.356+7A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.359+7A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.173+7A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.428+7A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.425+7A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.320+7A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.359+7A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.428+7A>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.134+7A>T
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 7.75e1
  variant carriers: 0
hgvs: c.428+7A>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

12-95879766-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879766
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879766
    reference: chr 12
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.359+9C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.359+9C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.356+9C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.134+9C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.428+9C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.320+9C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.173+9C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.425+9C>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.428+9C>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5993
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

12-95879781-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879781
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879781
    reference: chr 12
allele count: 2
allele frequency: 1.654834599281802e-5
allele num: 120858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.134+24A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.359+24A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.356+24A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.428+24A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.173+24A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.359+24A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.428+24A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.425+24A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.320+24A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

12-95879785-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879785
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879785
    reference: chr 12
allele count: 2
allele frequency: 1.655108492361674e-5
allele num: 120838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.320+28T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.356+28T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.428+28T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.359+28T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.134+28T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.425+28T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.359+28T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.428+28T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.173+28T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

12-95879797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879797
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879797
    reference: chr 12
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.428+40G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.359+40G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.173+40G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.320+40G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.134+40G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.425+40G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.428+40G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.356+40G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.359+40G>A
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-95879801-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879801
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879801
    reference: chr 12
allele count: 2
allele frequency: 1.66021948101539e-5
allele num: 120466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.134+44T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.320+44T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.428+44T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.428+44T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.173+44T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.425+44T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.359+44T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.356+44T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.359+44T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

12-95879808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95879808
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95879808
    reference: chr 12
allele count: 1
allele frequency: 8.333333333333334e-6
allele num: 120000
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.428+51G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.134+51G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.428+51G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.359+51G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.359+51G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.425+51G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.320+51G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.173+51G>A
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.356+51G>A
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

12-95887781-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887781
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887781
    reference: chr 12
allele count: 28
allele frequency: 2.341685344395009e-4
allele num: 119572
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-51A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-51A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-51A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-51A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-51A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-51A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-51A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-51A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-51A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22490
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10019
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12572
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-95887782-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887782
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887782
    reference: chr 12
allele count: 1
allele frequency: 8.358688020328329e-6
allele num: 119636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-50T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-50T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-50T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-50T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-50T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-50T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-50T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-50T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-50T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22524
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-95887790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887790
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887790
    reference: chr 12
allele count: 2
allele frequency: 1.671318503167149e-5
allele num: 119666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-42C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-42C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-42C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-42C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-42C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-42C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-42C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-42C>T
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-42C>T
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23063
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

12-95887798-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887798
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887798
    reference: chr 12
allele count: 1
allele frequency: 8.344459279038718e-6
allele num: 119840
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-34T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-34T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-34T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-34T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-34T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-34T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-34T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-34T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-34T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

12-95887799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887799
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887799
    reference: chr 12
allele count: 2
allele frequency: 1.668669069550127e-5
allele num: 119856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-33T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-33T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-33T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-33T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-33T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-33T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-33T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-33T>C
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-33T>C
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

12-95887799-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887799
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887799
    reference: chr 12
allele count: 1
allele frequency: 8.343345347750633e-6
allele num: 119856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-33T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-33T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-33T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-33T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-33T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-33T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-33T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-33T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-33T>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-95887803-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887803
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887803
    reference: chr 12
allele count: 1
allele frequency: 8.335973058135075e-6
allele num: 119962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-29A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-29A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-29A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-29A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-29A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-29A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-29A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-29A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-29A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

12-95887805-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887805
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887805
    reference: chr 12
allele count: 2
allele frequency: 1.666416704161042e-5
allele num: 120018
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-27T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-27T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-27T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-27T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-27T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-27T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-27T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-27T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-27T>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-95887807-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887807
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887807
    reference: chr 12
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-25A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-25A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-25A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-25A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-25A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-25A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-25A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-25A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-25A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8022
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-95887809-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887809
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887809
    reference: chr 12
allele count: 2
allele frequency: 1.664696775482346e-5
allele num: 120142
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-23A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-23A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-23A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-23A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-23A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-23A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-23A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-23A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-23A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24335
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

12-95887817-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887817
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887817
    reference: chr 12
allele count: 4
allele frequency: 3.321045465112417e-5
allele num: 120444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-15A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-15A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-15A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-15A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-15A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-15A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-15A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-15A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-15A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 43250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

12-95887825-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887825
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887825
    reference: chr 12
allele count: 2
allele frequency: 1.656150113446283e-5
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-7T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-7T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-7T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-7T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-7T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-7T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-7T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-7T>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-7T>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25111
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 9.75e1
  variant carriers: 2
hgvs: c.429-7T>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

12-95887828-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95887828
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95887828
    reference: chr 12
allele count: 6
allele frequency: 4.964585953531475e-5
allele num: 120856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000449004
  ensembl transcript: ENST00000553151
  gene symbol: METAP2
  hgvsc: ENST00000553151.1:c.357-4A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000325312
  ensembl transcript: ENST00000323666
  gene symbol: METAP2
  hgvsc: ENST00000323666.5:c.429-4A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000261220
  ensembl transcript: ENST00000261220
  gene symbol: METAP2
  hgvsc: ENST00000261220.9:c.360-4A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448169
  ensembl transcript: ENST00000546753
  gene symbol: METAP2
  hgvsc: ENST00000546753.1:c.360-4A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000450063
  ensembl transcript: ENST00000551840
  gene symbol: METAP2
  hgvsc: ENST00000551840.1:c.426-4A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000448614
  ensembl transcript: ENST00000550777
  gene symbol: METAP2
  hgvsc: ENST00000550777.1:c.321-4A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl transcript: ENST00000546478
  gene symbol: METAP2
  hgvsc: ENST00000546478.1:n.174-4A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000446052
  ensembl transcript: ENST00000535095
  gene symbol: METAP2
  hgvsc: ENST00000535095.1:c.429-4A>G
  variant of: http://identifiers.org/hgnc/16672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111142
  ensembl protein: ENSP00000447661
  ensembl transcript: ENST00000549808
  gene symbol: METAP2
  hgvsc: ENST00000549808.1:c.135-4A>G
  variant of: http://identifiers.org/hgnc/16672
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.75e1
  variant carriers: 0
hgvs: c.429-4A>G
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.4330900243309e-4
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66154
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

FS
type: SiteQuality
SIO_000300: 8.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

DP
type: SiteQuality
SIO_000300: 2.017497e6

QD
type: SiteQuality
SIO_000300: 1.431e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4400
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023248783142365e-5
allele num: 66154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.431e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

FS
type: SiteQuality
SIO_000300: 8.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.017497e6

MQ
type: SiteQuality
SIO_000300: 5.892e1

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.35691878703381e-4
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.511624391571182e-4
allele num: 66154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.682416731216112e-5
allele num: 10328
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.338087444470423e-4
allele num: 8554
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 8.78e-1

DP
type: SiteQuality
SIO_000300: 2.017497e6

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

QD
type: SiteQuality
SIO_000300: 1.431e1

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4332
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561963075192902e-5
allele num: 64022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

MQ
type: SiteQuality
SIO_000300: 5.533e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.03e0

DP
type: SiteQuality
SIO_000300: 1.919506e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 2.039e1

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5928
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7526
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576839383140433e-5
allele num: 63418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.731e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.889905e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.871e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

QD
type: SiteQuality
SIO_000300: 3.402e1

GenotypeQuality
all individuals: 1558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34413
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.712969878018422e-4
allele num: 8034
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.122e1

VQSLOD
type: SiteQuality
SIO_000300: -4.553e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

FS
type: SiteQuality
SIO_000300: 3.124e0

MQ
type: SiteQuality
SIO_000300: 5.733e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

DP
type: SiteQuality
SIO_000300: 1.866845e6

GenotypeQuality
all individuals: 397
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9078
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.243278305711413e-5
allele num: 61666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

VQSLOD
type: SiteQuality
SIO_000300: -1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.032e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: -2.025e0

FS
type: SiteQuality
SIO_000300: 1.113e1

DP
type: SiteQuality
SIO_000300: 1.808282e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5915
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 557
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.29023130326062e-5
allele num: 60786
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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DP
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FS
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.29023130326062e-5
allele num: 60786
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
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DP
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FS
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.306440946964687e-5
allele num: 60488
num of homozygotes: 0

South Asian
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.871912693854107e-4
allele num: 10446
num of homozygotes: 0

African
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allele count: 11
allele frequency: 1.131920148178638e-3
allele num: 9718
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15584
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.344034242910647e-5
allele num: 59808
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.801e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.783e0

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
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SIO_000300: -1.926e0

DP
type: SiteQuality
SIO_000300: 1.7329e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.690159889125511e-5
allele num: 59166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.454944487477407e-5
allele num: 15492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -3.5e-3

DP
type: SiteQuality
SIO_000300: 1.698808e6

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 5.150745141130417e-5
allele num: 58244
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.374003847210772e-4
allele num: 7278
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.062473438164046e-4
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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East Asian
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Other
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European (Finnish)
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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African
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East Asian
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DP
type: SiteQuality
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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East Asian
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South Asian
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Other
type: Population
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.80766449746927e-5
allele num: 55320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15018
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African
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allele frequency: 0.0e0
allele num: 9110
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.858252499349612e-5
allele num: 53814
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14756
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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BaseQRankSum
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SIO_000300: -1.735e0

ClippingRankSum
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MQ
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SIO_000300: 5.739e1

ReadPosRankSum
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MQRankSum
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VQSLOD
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SIO_000300: -1.955e0

DP
type: SiteQuality
SIO_000300: 1.373858e6

QD
type: SiteQuality
SIO_000300: 2.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53620
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.086248099065827e-4
allele num: 9206
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14706
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.120573733751681e-4
allele num: 8924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 3.67e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

DP
type: SiteQuality
SIO_000300: 1.3597e6

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.383327703336711e-5
allele num: 53286
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.772e0

FS
type: SiteQuality
SIO_000300: 4.182e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.835e1

DP
type: SiteQuality
SIO_000300: 1.33384e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14376
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 2.863e1

DP
type: SiteQuality
SIO_000300: 1.273084e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.683e0

MQ
type: SiteQuality
SIO_000300: 4.577e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51234
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
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VQSLOD
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QD
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.272043e6

ClippingRankSum
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SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.990049751243781e-5
allele num: 50250
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 14206
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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FS
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MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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SIO_000300: 3.46e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6964
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40626
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.663893510815308e-4
allele num: 6010
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5378
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.156954e6

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.341561577676415e-4
allele num: 7454
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African
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allele frequency: 0.0e0
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Other
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allele count: 0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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ClippingRankSum
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SIO_000300: -7.08e-1

InbreedingCoeff
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SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.9034e5

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1057

GenotypeQuality
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bin: 6.25e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 41
allele frequency: 2.303370786516854e-1
allele num: 178
num of homozygotes: 5

European (Non-Finnish)
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allele count: 266
allele frequency: 1.150519031141869e-1
allele num: 2312
num of homozygotes: 11

South Asian
type: Population
allele count: 874
allele frequency: 1.383349161126939e-1
allele num: 6318
num of homozygotes: 46

Other
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allele count: 9
allele frequency: 8.823529411764706e-2
allele num: 102
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 8
allele frequency: 1.0e-1
allele num: 80
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.32e-2

DP
type: SiteQuality
SIO_000300: 2.14192e5

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.022e1

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 7.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 9.09090909090909e-3
allele num: 110
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 102
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South Asian
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allele count: 17
allele frequency: 2.690724912947135e-3
allele num: 6318
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 8.650519031141869e-4
allele num: 2312
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.022e1

VQSLOD
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 2.14192e5

FS
type: SiteQuality
SIO_000300: 7.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 3.998933617701946e-4
allele num: 7502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.08697e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.42e-2

QD
type: SiteQuality
SIO_000300: 1.148e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.523879186858066e-5
allele num: 65622
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13942
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

DP
type: SiteQuality
SIO_000300: 2.680512e6

FS
type: SiteQuality
SIO_000300: 6.539e0

QD
type: SiteQuality
SIO_000300: 1.447e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.417e0

ReadPosRankSum
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SIO_000300: 1.22e0

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 2.703017e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.05858653176214e-5
allele num: 66022
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11504
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 14888
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
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DP
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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SIO_000300: 1.573e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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African
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.025535519787002e-5
allele num: 66104
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.409e0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -3.0e-4

ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
type: SiteQuality
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
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Latino
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African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66174
num of homozygotes: 0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24664
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
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GenotypeQuality
all individuals: 3625
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.306165099268548e-4
allele num: 15312
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.728585e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

FS
type: SiteQuality
SIO_000300: 1.2376e1

MQ
type: SiteQuality
SIO_000300: 5.845e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.377e0

QD
type: SiteQuality
SIO_000300: 1.851e1

VQSLOD
type: SiteQuality
SIO_000300: -1.496e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.954e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

QD
type: SiteQuality
SIO_000300: 1.682e1

DP
type: SiteQuality
SIO_000300: 2.732265e6

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.861e0

FS
type: SiteQuality
SIO_000300: 6.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeDepth
all individuals: 2520
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14397
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2482
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1950
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.213495712687958e-5
allele num: 16094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
SIO_000300: 2.745998e6

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 8.606e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

QD
type: SiteQuality
SIO_000300: 1.265e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 340
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3702
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24693
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4065
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.206554121151936e-5
allele num: 16112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

QD
type: SiteQuality
SIO_000300: 1.857e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.746142e6

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 14492
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24721
bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.549e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.129e1

DP
type: SiteQuality
SIO_000300: 2.754093e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 5540
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 14512
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24720
bin: 9.75e1
variant carriers: 17

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.249077878069991e-4
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 2.755799e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.814e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

FS
type: SiteQuality
SIO_000300: 5.24e-1

GenotypeQuality
all individuals: 4130
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24788
bin: 9.75e1
variant carriers: 199

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
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variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.325259515570934e-4
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 147
allele frequency: 8.950316609839259e-3
allele num: 16424
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.046899364279717e-4
allele num: 66696
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

QD
type: SiteQuality
SIO_000300: 1.381e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

FS
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 2.769857e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 73

GenotypeQuality
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GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 14493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.948967047464844e-4
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.781428324399101e-4
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 52
allele frequency: 3.16301703163017e-3
allele num: 16440
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

DP
type: SiteQuality
SIO_000300: 2.759525e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

QD
type: SiteQuality
SIO_000300: 1.385e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.47e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

GenotypeQuality
all individuals: 4157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1993
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variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.158e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.719e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

DP
type: SiteQuality
SIO_000300: 2.752836e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.646e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 4.659e0

VQSLOD
type: SiteQuality
SIO_000300: -1.98e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.544e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.753252e6

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5571
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variant carriers: 0

GenotypeQuality
all individuals: 24692
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

DP
type: SiteQuality
SIO_000300: 2.75342e6

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

FS
type: SiteQuality
SIO_000300: 1.276e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.113e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.159e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.25e-1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4093
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 25637
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GenotypeQuality
all individuals: 1948
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variant carriers: 0

GenotypeQuality
all individuals: 13927
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

QD
type: SiteQuality
SIO_000300: 1.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.45e0

DP
type: SiteQuality
SIO_000300: 3.069844e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

FS
type: SiteQuality
SIO_000300: 6.7e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
all individuals: 1948
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6065

European (Non-Finnish)
type: Population
allele count: 4344
allele frequency: 6.512548349374832e-2
allele num: 66702
num of homozygotes: 158

Other
type: Population
allele count: 46
allele frequency: 5.077262693156733e-2
allele num: 906
num of homozygotes: 2

Latino
type: Population
allele count: 311
allele frequency: 2.69450701784786e-2
allele num: 11542
num of homozygotes: 6

South Asian
type: Population
allele count: 1107
allele frequency: 6.707464857004362e-2
allele num: 16504
num of homozygotes: 51

East Asian
type: Population
allele count: 108
allele frequency: 1.247977813727756e-2
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 165
allele frequency: 1.588371197535618e-2
allele num: 10388
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 217
allele frequency: 3.280919262171152e-2
allele num: 6614
num of homozygotes: 6

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

FS
type: SiteQuality
SIO_000300: 6.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.45e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 3.069844e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.34e0

MQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

FS
type: SiteQuality
SIO_000300: 2.284e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e0

DP
type: SiteQuality
SIO_000300: 2.592943e6

MQ
type: SiteQuality
SIO_000300: 5.99e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
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DP
type: SiteQuality
SIO_000300: 2.592757e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.699e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.289e0

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.803e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
all individuals: 2151
bin: 8.75e1
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GenotypeQuality
all individuals: 6034
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.163e0

MQRankSum
type: SiteQuality
SIO_000300: 4.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.068e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.591765e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
SIO_000300: 6.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.53e0

QD
type: SiteQuality
SIO_000300: 1.226e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

QD
type: SiteQuality
SIO_000300: 3.233e1

BaseQRankSum
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SIO_000300: -2.217e0

DP
type: SiteQuality
SIO_000300: 2.589903e6

VQSLOD
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SIO_000300: -2.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.237e0

FS
type: SiteQuality
SIO_000300: 6.359e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736412571627018e-4
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.474e0

DP
type: SiteQuality
SIO_000300: 2.58683e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

QD
type: SiteQuality
SIO_000300: 1.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.28e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 2.58654e6

FS
type: SiteQuality
SIO_000300: 1.151e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.009e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.488e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008876184744998e-5
allele num: 66470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.696e1

DP
type: SiteQuality
SIO_000300: 2.577236e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009510051763573e-5
allele num: 66456
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.572474e6

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.94e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507431637975218e-5
allele num: 66338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.542139e6

FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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allele frequency: 1.169590643274854e-4
allele num: 8550
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African
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allele frequency: 9.710623422023694e-5
allele num: 10298
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.527219e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65918
num of homozygotes: 0

East Asian
type: Population
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Other
type: Population
allele count: 0
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DP
type: SiteQuality
SIO_000300: 2.506164e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQ
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 7915
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.749475157452764e-4
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.337479899268789e-4
allele num: 65918
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.255965837729214e-4
allele num: 15924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-4
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 2.236e0

BaseQRankSum
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SIO_000300: 3.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

DP
type: SiteQuality
SIO_000300: 1.663592e6

QD
type: SiteQuality
SIO_000300: 1.641e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.750390015600624e-5
allele num: 10256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.664096e6

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 1.275e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -2.619e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1354
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1577
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65982
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.279829188646068e-5
allele num: 15924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 4.115e0

QD
type: SiteQuality
SIO_000300: 1.495e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.569e0

VQSLOD
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.683298e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1580
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15996
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.732099196646873e-5
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66058
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.704025e6

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.027275754548482e-5
allele num: 66066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

FS
type: SiteQuality
SIO_000300: 6.525e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.705742e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513637877274241e-5
allele num: 66066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.352e1

FS
type: SiteQuality
SIO_000300: 6.525e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512996641147457e-5
allele num: 66094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.34e1

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02416306287235e-5
allele num: 66134
num of homozygotes: 0

East Asian
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.492e0

DP
type: SiteQuality
SIO_000300: 1.720523e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

QD
type: SiteQuality
SIO_000300: 1.586e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

GenotypeQuality
all individuals: 1592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8059
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1541
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511030522816561e-5
allele num: 66180
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.201935003721161e-5
allele num: 16124
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e0

VQSLOD
type: SiteQuality
SIO_000300: -7.73e-1

FS
type: SiteQuality
SIO_000300: 3.189e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.723528e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-1

QD
type: SiteQuality
SIO_000300: 7.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 1537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742767514813524e-4
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016409266409266e-5
allele num: 66304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.489e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

DP
type: SiteQuality
SIO_000300: 1.734472e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

GenotypeQuality
all individuals: 334
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010416039496658e-5
allele num: 66436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.743287e6

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

QD
type: SiteQuality
SIO_000300: 8.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.94e1