http://identifiers.org/exac.variant/16-720523-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720523
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720523
    reference: chr 16
allele count: 1
allele frequency: 8.639159582555808e-6
allele num: 115752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*81C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*202C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.640C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.528C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562598
  gene symbol: RHOT2
  hgvsc: ENST00000562598.1:n.597C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.506C>A
  hgvsp: ENSP00000459564.1:p.Pro169His
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.443C>A
  hgvsp: ENSP00000456855.1:p.Pro148His
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.424C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562708
  gene symbol: RHOT2
  hgvsc: ENST00000562708.1:n.670C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.506C>A
  hgvsp: ENSP00000321971.4:p.Pro169His
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1971C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*258C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.415C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.69C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*202C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.502C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.490C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*81C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.825C>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro169His
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

16-720524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720524
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720524
    reference: chr 16
allele count: 4
allele frequency: 3.45452975213749e-5
allele num: 115790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.529C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.826C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.491C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*82C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.425C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*203C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562708
  gene symbol: RHOT2
  hgvsc: ENST00000562708.1:n.671C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562598
  gene symbol: RHOT2
  hgvsc: ENST00000562598.1:n.598C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.444C>T
  hgvsp: ENST00000561929.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.507C>T
  hgvsp: ENST00000563134.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*259C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*203C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.503C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.416C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.507C>T
  hgvsp: ENST00000315082.4:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.641C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1972C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.70C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*82C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro169Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-720525-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720525
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720525
    reference: chr 16
allele count: 1
allele frequency: 8.636026046254556e-6
allele num: 115794
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*83A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.827A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562708
  gene symbol: RHOT2
  hgvsc: ENST00000562708.1:n.672A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.445A>C
  hgvsp: ENSP00000456855.1:p.Thr149Pro
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.426A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.508A>C
  hgvsp: ENSP00000321971.4:p.Thr170Pro
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562598
  gene symbol: RHOT2
  hgvsc: ENST00000562598.1:n.599A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.530A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*260A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.508A>C
  hgvsp: ENSP00000459564.1:p.Thr170Pro
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1973A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.642A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.417A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*83A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*204A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.71A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.492A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*204A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.504A>C
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr170Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

16-720528-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720528
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720529
    reference: chr 16
allele count: 1
allele frequency: 8.644088308006155e-6
allele num: 115686
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.517dupC
  hgvsp: ENSP00000459564.1:p.Leu173ProfsTer3
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*92dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.454dupC
  hgvsp: ENSP00000456855.1:p.Leu152ProfsTer3
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.435dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.501dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*269dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*92dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562598
  gene symbol: RHOT2
  hgvsc: ENST00000562598.1:n.608dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.517dupC
  hgvsp: ENSP00000321971.4:p.Leu173ProfsTer3
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*213dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.426dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.80dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*213dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.513dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.836dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.7dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1982dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.651dupC
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.539dupC
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 12920
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu173ProfsTer3
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

16-720530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720530
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720530
    reference: chr 16
allele count: 1
allele frequency: 8.644835575227359e-6
allele num: 115676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*265C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.450C>T
  hgvsp: ENST00000561929.1:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.497C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*209C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.832C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.76C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.431C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*209C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.513C>T
  hgvsp: ENST00000315082.4:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562598
  gene symbol: RHOT2
  hgvsc: ENST00000562598.1:n.604C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.509C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1978C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.647C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.513C>T
  hgvsp: ENST00000563134.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.422C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*88C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*88C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.535C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9378
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala171Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

16-720532-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720532
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720532
    reference: chr 16
allele count: 4
allele frequency: 3.461704889658156e-5
allele num: 115550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*211C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*90C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*211C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.834C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*90C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*267C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.452C>G
  hgvsp: ENSP00000456855.1:p.Pro151Arg
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.5C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.433C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.515C>G
  hgvsp: ENSP00000459564.1:p.Pro172Arg
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.424C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1980C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.537C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.515C>G
  hgvsp: ENSP00000321971.4:p.Pro172Arg
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.499C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.78C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562598
  gene symbol: RHOT2
  hgvsc: ENST00000562598.1:n.606C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.649C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.511C>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro172Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

16-720533-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720533
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720533
    reference: chr 16
allele count: 1
allele frequency: 8.656509695290859e-6
allele num: 115520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*268C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.6C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.835C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.79C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.425C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.650C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1981C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*91C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*212C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.453C>G
  hgvsp: ENST00000561929.1:c.453C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.538C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.516C>G
  hgvsp: ENST00000563134.1:c.516C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.516C>G
  hgvsp: ENST00000315082.4:c.516C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.434C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*91C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*212C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.500C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.512C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562598
  gene symbol: RHOT2
  hgvsc: ENST00000562598.1:n.607C>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro172Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

16-720538-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720538
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720538
    reference: chr 16
allele count: 1
allele frequency: 8.659808098652533e-6
allele num: 115476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.439A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.521A>G
  hgvsp: ENSP00000321971.4:p.Tyr174Cys
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.430A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.521A>G
  hgvsp: ENSP00000459564.1:p.Tyr174Cys
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000562598
  gene symbol: RHOT2
  hgvsc: ENST00000562598.1:n.612A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.517A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*217A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.655A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.84A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*96A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.505A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*273A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.458A>G
  hgvsp: ENSP00000456855.1:p.Tyr153Cys
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.11A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1986A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*217A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.840A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.543A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*96A>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr174Cys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

16-720542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720542
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720542
    reference: chr 16
allele count: 1
allele frequency: 8.673177331783726e-6
allele num: 115298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.434C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1990C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.844C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*221C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*277C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.525C>T
  hgvsp: ENST00000563134.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*100C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.509C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.88C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*221C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.547C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.443C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.525C>T
  hgvsp: ENST00000315082.4:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.462C>T
  hgvsp: ENST00000561929.1:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.15C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.659C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*100C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.521C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp175Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-720551-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720551
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720551
    reference: chr 16
allele count: 3
allele frequency: 2.608831765135572e-5
allele num: 114994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.24C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.534C>T
  hgvsp: ENST00000563134.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.471C>T
  hgvsp: ENST00000561929.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.534C>T
  hgvsp: ENST00000315082.4:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.518C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*286C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*230C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*109C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.530C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.97C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.668C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*230C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.443C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.1999C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.853C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.452C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*109C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.556C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala178Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

16-720555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720555
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720555
    reference: chr 16
allele count: 1
allele frequency: 8.709739230407442e-6
allele num: 114814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*234C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.522C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.456C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.101C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.447C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*290C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*234C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.538C>T
  hgvsp: ENSP00000321971.4:p.Gln180Ter
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.475C>T
  hgvsp: ENSP00000456855.1:p.Gln159Ter
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2003C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.538C>T
  hgvsp: ENSP00000459564.1:p.Gln180Ter
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.28C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.534C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.672C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.857C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.560C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln180Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

16-720569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720569
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720569
    reference: chr 16
allele count: 1
allele frequency: 8.78827292860407e-6
allele num: 113788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+12C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+12C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

16-720575-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720575
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720575
    reference: chr 16
allele count: 14
allele frequency: 1.248951772619409e-4
allele num: 112094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+18C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+18C>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-720575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720575
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720575
    reference: chr 16
allele count: 1
allele frequency: 8.921084090138634e-6
allele num: 112094
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+18C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+18C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

16-720578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720578
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720578
    reference: chr 16
allele count: 1
allele frequency: 8.836107871204892e-6
allele num: 113172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+21C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+21C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

16-720582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720582
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720582
    reference: chr 16
allele count: 4
allele frequency: 3.541201883919402e-5
allele num: 112956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+25C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+25C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-720583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720583
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720583
    reference: chr 16
allele count: 1
allele frequency: 8.847365254627173e-6
allele num: 113028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+26G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+26G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

16-720583-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720583
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720583
    reference: chr 16
allele count: 1
allele frequency: 8.847365254627173e-6
allele num: 113028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+26G>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+26G>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-720592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720592
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720592
    reference: chr 16
allele count: 1
allele frequency: 8.881783462119194e-6
allele num: 112590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+35C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

16-720597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720597
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720597
    reference: chr 16
allele count: 1
allele frequency: 8.853004709798506e-6
allele num: 112956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+40G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

16-720598-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720598
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720598
    reference: chr 16
allele count: 2
allele frequency: 1.771322292091046e-5
allele num: 112910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+41G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+41G>C
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

16-720601-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720601
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720601
    reference: chr 16
allele count: 1
allele frequency: 8.844861135680169e-6
allele num: 113060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+44C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+44C>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

16-720602-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720603
    reference: chr 16
allele count: 1
allele frequency: 8.847365254627173e-6
allele num: 113028
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+50dupG
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+50dupG
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

16-720602-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720602
    reference: chr 16
allele count: 1
allele frequency: 8.847365254627173e-6
allele num: 113028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+45A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+45A>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

16-720604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720604
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720604
    reference: chr 16
allele count: 1
allele frequency: 8.830801836806782e-6
allele num: 113240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+47G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+47G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-720608-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720608
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720608
    reference: chr 16
allele count: 1
allele frequency: 8.852377748663291e-6
allele num: 112964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*292+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.103+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.477+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*115+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.562+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.524+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*236+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2005+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.458+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.674+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.540+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.859+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.30+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*236+51T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+51T>C
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-720629-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720629
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720629
    reference: chr 16
allele count: 1
allele frequency: 8.552856654122476e-6
allele num: 116920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+72A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+72A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+72A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-67A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+72A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-46A>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-46A>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

16-720631-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720631
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720631
    reference: chr 16
allele count: 5
allele frequency: 4.275112007934608e-5
allele num: 116956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+74G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+74G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+74G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-65G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+74G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD

16-720632-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720632
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720632
    reference: chr 16
allele count: 55
allele frequency: 4.921700223713646e-4
allele num: 111750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+75T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+75T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-64T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+75T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-43T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+75T>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-43T>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

16-720633-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720633
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720633
    reference: chr 16
allele count: 6
allele frequency: 5.147740142077628e-5
allele num: 116556
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+76C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+76C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+76C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-42C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-63C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+76C>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

16-720633-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720633
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720633
    reference: chr 16
allele count: 9
allele frequency: 7.721610213116442e-5
allele num: 116556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+76C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+76C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-63C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-42C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+76C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+76C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-42C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

16-720634-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720634
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720634
    reference: chr 16
allele count: 3
allele frequency: 2.564409416511377e-5
allele num: 116986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+77G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+77G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+77G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+77G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-41G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-62G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

16-720636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720636
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720636
    reference: chr 16
allele count: 1
allele frequency: 8.548762139242238e-6
allele num: 116976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-60C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+79C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+79C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+79C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+79C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-720637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720637
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720637
    reference: chr 16
allele count: 2
allele frequency: 1.707854422489027e-5
allele num: 117106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+80G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+80G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+80G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+80G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-59G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-38G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-38G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-720638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720638
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720638
    reference: chr 16
allele count: 2
allele frequency: 1.707154685286034e-5
allele num: 117154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+81T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+81T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+81T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-58T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-37T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+81T>C
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-720641-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720641
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720641
    reference: chr 16
allele count: 1
allele frequency: 8.528057308545113e-6
allele num: 117260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+84G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+84G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+84G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+84G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-34G>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-55G>C
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

16-720643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720643
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720643
    reference: chr 16
allele count: 1
allele frequency: 8.519484060045324e-6
allele num: 117378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+86C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+86C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+86C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+86C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-32C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-53C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-720646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720646
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720646
    reference: chr 16
allele count: 1
allele frequency: 8.509624385179638e-6
allele num: 117514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+89C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+89C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-50C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+89C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+89C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

16-720647-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720647
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720647
    reference: chr 16
allele count: 1
allele frequency: 8.506149946411256e-6
allele num: 117562
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+90T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+90T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+90T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-49T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+90T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-28T>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-28T>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

16-720652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720652
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720652
    reference: chr 16
allele count: 2
allele frequency: 1.697677577074562e-5
allele num: 117808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+95G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+95G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-44G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+95G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-23G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+95G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

16-720656-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720656
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720656
    reference: chr 16
allele count: 1
allele frequency: 8.468691248454463e-6
allele num: 118082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+99T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+99T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+99T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+99T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-19T>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-40T>C
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-720657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720657
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720657
    reference: chr 16
allele count: 2
allele frequency: 1.69296404144376e-5
allele num: 118136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+100G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+100G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-18G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+100G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-39G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+100G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-18G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

16-720659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720659
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720659
    reference: chr 16
allele count: 1
allele frequency: 8.45851942076059e-6
allele num: 118224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+102G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+102G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-16G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+102G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-37G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+102G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-16G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-720661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720661
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720661
    reference: chr 16
allele count: 1
allele frequency: 8.453799983092399e-6
allele num: 118290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.536+104C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-35C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.449+104C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*115+104C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+104C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-14C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-14C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

16-720667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720667
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720667
    reference: chr 16
allele count: 150
allele frequency: 1.265459699326775e-3
allele num: 118534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-107C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+110C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-29C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-109C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-8C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-107C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.541-8C>T
num of homozygotes: 1
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

16-720672-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720672
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720672
    reference: chr 16
allele count: 5
allele frequency: 4.211661247662528e-5
allele num: 118718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.31-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-102C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2006-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*237-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-104C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-24C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.525-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-102C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.478-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.860-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.541-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*293-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.563-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*237-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*116-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.459-3C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+115C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.675-3C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.541-3C>T
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/16-720678-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720678
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720678
    reference: chr 16
allele count: 1
allele frequency: 8.412693071305987e-6
allele num: 118868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*240A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*296A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+121A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*119A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.566A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.528A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.544A>C
  hgvsp: ENST00000315082.4:c.544A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.863A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.34A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*240A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.678A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.481A>C
  hgvsp: ENST00000561929.1:c.481A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-96A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.462A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2009A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-18A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-96A>C
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-98A>C
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg182Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

16-720683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720683
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720683
    reference: chr 16
allele count: 981
allele frequency: 8.245637629021954e-3
allele num: 118972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*301C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.571C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.868C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-93C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+126C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2014C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.533C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*245C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*124C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.549C>T
  hgvsp: ENST00000315082.4:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*245C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.486C>T
  hgvsp: ENST00000561929.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.467C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-91C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-13C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-91C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.39C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.683C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 9.75e1
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Pro183Pro
num of homozygotes: 36
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

16-720684-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720684
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720684
    reference: chr 16
allele count: 5
allele frequency: 4.201610056973833e-5
allele num: 119002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*246G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.40G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*302G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.534G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2015G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-90G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.487G>A
  hgvsp: ENSP00000456855.1:p.Ala163Thr
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*125G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*246G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-12G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.550G>A
  hgvsp: ENSP00000321971.4:p.Ala184Thr
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.468G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+127G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.572G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.684G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.869G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-90G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-92G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala184Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-720685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720685
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720685
    reference: chr 16
allele count: 1
allele frequency: 8.40223163272165e-6
allele num: 119016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*247C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-89C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.535C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*126C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.488C>T
  hgvsp: ENSP00000456855.1:p.Ala163Val
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.41C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-91C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*303C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.685C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.551C>T
  hgvsp: ENSP00000321971.4:p.Ala184Val
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+128C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2016C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.469C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.870C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*247C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.573C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-89C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-11C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala184Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

16-720686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720686
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720686
    reference: chr 16
allele count: 4
allele frequency: 3.360102147105272e-5
allele num: 119044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2017G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.470G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.871G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-90G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*248G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-88G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*127G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*304G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.536G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*248G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-10G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.489G>A
  hgvsp: ENST00000561929.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-88G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.574G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.42G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.686G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+129G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.552G>A
  hgvsp: ENST00000315082.4:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala184Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-720689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720689
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720689
    reference: chr 16
allele count: 1
allele frequency: 8.398138972403716e-6
allele num: 119074
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.555C>T
  hgvsp: ENST00000315082.4:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+132C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.874C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.492C>T
  hgvsp: ENST00000561929.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2020C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.539C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*251C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.473C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.577C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*307C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-85C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*251C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-85C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-87C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.689C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*130C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-7C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.45C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.104-7C>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

16-720690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720690
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720690
    reference: chr 16
allele count: 2
allele frequency: 1.67937392939912e-5
allele num: 119092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.493G>A
  hgvsp: ENSP00000456855.1:p.Ala165Thr
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.540G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-84G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.474G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.46G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*252G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.578G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.690G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*308G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-84G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.104-6G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.556G>A
  hgvsp: ENSP00000321971.4:p.Ala186Thr
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2021G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+133G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*252G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-86G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.875G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala186Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-720697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720697
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720697
    reference: chr 16
allele count: 4
allele frequency: 3.356943838329585e-5
allele num: 119156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.697C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.500C>T
  hgvsp: ENSP00000456855.1:p.Ala167Val
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.105C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.563C>T
  hgvsp: ENSP00000321971.4:p.Ala188Val
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*138C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2028C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.53C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.882C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*259C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.481C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.547C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.585C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*315C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-77C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-79C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*259C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+140C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-77C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala188Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-720698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720698
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720698
    reference: chr 16
allele count: 228
allele frequency: 1.91304055981608e-3
allele num: 119182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.586G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*260G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*260G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.501G>A
  hgvsp: ENST00000561929.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*316G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2029G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.482G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.564G>A
  hgvsp: ENST00000315082.4:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.106G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.698G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.548G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.883G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+141G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-78G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-76G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*139G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.54G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-76G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14732
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
hgvs: n.106G>A
num of homozygotes: 3
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

16-720699-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720699
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720699
    reference: chr 16
allele count: 2
allele frequency: 1.677824197580577e-5
allele num: 119202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.502C>G
  hgvsp: ENSP00000456855.1:p.Leu168Val
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.565C>G
  hgvsp: ENSP00000321971.4:p.Leu189Val
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-75C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.55C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+142C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2030C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*317C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*140C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.107C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*261C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.587C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.549C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.884C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.483C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*261C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.699C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-75C>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-77C>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu189Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

16-720703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720703
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720703
    reference: chr 16
allele count: 5
allele frequency: 4.194490117781282e-5
allele num: 119204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-71C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.703C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+146C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.591C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.888C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*265C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-73C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.506C>T
  hgvsp: ENSP00000456855.1:p.Thr169Met
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.111C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.569C>T
  hgvsp: ENSP00000321971.4:p.Thr190Met
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-71C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*321C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.553C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*265C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2034C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.487C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.59C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*144C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr190Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

16-720704-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720704
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720704
    reference: chr 16
allele count: 12
allele frequency: 1.006525641240711e-4
allele num: 119222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2035G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.554G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*322G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*266G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.889G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.570G>A
  hgvsp: ENST00000315082.4:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.592G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*145G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.507G>A
  hgvsp: ENST00000561929.1:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.704G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*266G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.112G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.488G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-72G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-70G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+147G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-70G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.60G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr190Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ

16-720705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720705
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720705
    reference: chr 16
allele count: 2
allele frequency: 1.677373903416811e-5
allele num: 119234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*267C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.593C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.113C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*323C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.890C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*146C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-71C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.571C>T
  hgvsp: ENSP00000321971.4:p.Arg191Cys
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*267C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.61C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.489C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.508C>T
  hgvsp: ENSP00000456855.1:p.Arg170Cys
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.555C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2036C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-69C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-69C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+148C>T
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.705C>T
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg191Cys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

16-720706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720706
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720706
    reference: chr 16
allele count: 4
allele frequency: 3.354635267280565e-5
allele num: 119238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2037G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-68G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.706G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.490G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*268G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*147G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-70G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*324G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.572G>A
  hgvsp: ENSP00000321971.4:p.Arg191His
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.556G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.509G>A
  hgvsp: ENSP00000456855.1:p.Arg170His
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*268G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.594G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.114G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.62G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-68G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+149G>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.891G>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg191His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-720707-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720707
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720707
    reference: chr 16
allele count: 180
allele frequency: 1.509383333053818e-3
allele num: 119254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*148C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.573C>A
  hgvsp: ENST00000315082.4:c.573C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.595C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.892C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.491C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+150C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-69C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.510C>A
  hgvsp: ENST00000561929.1:c.510C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.115C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*269C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*325C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2038C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-67C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.707C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*269C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.63C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.557C>A
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-67C>A
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg191Arg
num of homozygotes: 5
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

16-720708-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 720708
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 720708
    reference: chr 16
allele count: 1
allele frequency: 8.385181706887589e-6
allele num: 119258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568950
  gene symbol: RHOT2
  hgvsc: ENST00000568950.1:n.596A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569943
  gene symbol: RHOT2
  hgvsc: ENST00000569943.2:n.450-66A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000566965
  gene symbol: RHOT2
  hgvsc: ENST00000566965.1:n.492A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000568636
  gene symbol: RHOT2
  hgvsc: ENST00000568636.1:n.893A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569358
  gene symbol: RHOT2
  hgvsc: ENST00000569358.1:n.116A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000569675
  gene symbol: RHOT2
  hgvsc: ENST00000569675.1:n.708A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000458136
  ensembl transcript: ENST00000563637
  gene symbol: RHOT2
  hgvsc: ENST00000563637.1:c.*270A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000602564
  gene symbol: RHOT2
  hgvsc: ENST00000602564.1:n.2039A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454486
  ensembl transcript: ENST00000570280
  gene symbol: RHOT2
  hgvsc: ENST00000570280.1:c.*270A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000457852
  ensembl transcript: ENST00000562333
  gene symbol: RHOT2
  hgvsc: ENST00000562333.1:c.*149A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567589
  gene symbol: RHOT2
  hgvsc: ENST00000567589.1:n.64A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000456855
  ensembl transcript: ENST00000561929
  gene symbol: RHOT2
  hgvsc: ENST00000561929.1:c.511A>G
  hgvsp: ENSP00000456855.1:p.Ile171Val
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000321971
  ensembl transcript: ENST00000315082
  gene symbol: RHOT2
  hgvsc: ENST00000315082.4:c.574A>G
  hgvsp: ENSP00000321971.4:p.Ile192Val
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000563776
  gene symbol: RHOT2
  hgvsc: ENST00000563776.2:n.537-68A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140983
  ensembl transcript: ENST00000567017
  gene symbol: RHOT2
  hgvsc: ENST00000567017.1:n.558A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000459564
  ensembl transcript: ENST00000563134
  gene symbol: RHOT2
  hgvsc: ENST00000563134.1:c.540+151A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000454307
  ensembl transcript: ENST00000561983
  gene symbol: RHOT2
  hgvsc: ENST00000561983.1:c.*116-66A>G
  variant of: http://identifiers.org/hgnc/21169
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140983
  ensembl protein: ENSP00000455138
  ensembl transcript: ENST00000566214
  gene symbol: RHOT2
  hgvsc: ENST00000566214.1:c.*326A>G
  variant of: http://identifiers.org/hgnc/21169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile192Val
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 597
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2242
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 461
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 864
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5668
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1617
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2687
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1193
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13017
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2282
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 685
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2105
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 436
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9384
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 12606
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3800
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2819
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4483
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3235
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16257
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560208443848098e-5
allele num: 64094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14078
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.219e0

DP
type: SiteQuality
SIO_000300: 1.987709e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 7.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeDepth
all individuals: 2246
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12608
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2290
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1616
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5667
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 436
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2105
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 864
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 460
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13024
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9386
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1193
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 341
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2686
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16260
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 533
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16040
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.985074626865672e-4
allele num: 10050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559624442434262e-5
allele num: 64118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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BaseQRankSum
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SIO_000300: -4.074e0

MQRankSum
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SIO_000300: 3.07e-1

VQSLOD
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SIO_000300: 3.63e0

MQ
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SIO_000300: 5.937e1

InbreedingCoeff
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SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 1.987983e6

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.559429872438636e-5
allele num: 64126
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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DP
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FS
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SIO_000300: 6.05e0

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14048
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560792882784454e-5
allele num: 64070
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 1.3894e1

InbreedingCoeff
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SIO_000300: 5.7e-3

ClippingRankSum
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SIO_000300: 1.73e-1

VQSLOD
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SIO_000300: -4.356e-1

BaseQRankSum
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SIO_000300: 7.81e-1

DP
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SIO_000300: 1.986036e6

ReadPosRankSum
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SIO_000300: -2.51e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 64070
num of homozygotes: 0

Other
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 7.144898542440698e-5
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num of homozygotes: 0

Latino
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allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.124707058713245e-5
allele num: 64006
num of homozygotes: 0

Other
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European (Finnish)
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East Asian
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 63980
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South Asian
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Other
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.333e0

MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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VQSLOD
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InbreedingCoeff
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DP
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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South Asian
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African
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Non-Finnish)
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MQ
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VQSLOD
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DP
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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African
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European (Finnish)
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VQSLOD
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ClippingRankSum
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FS
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DP
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele frequency: 3.151260504201681e-4
allele num: 9520
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 62250
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East Asian
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allele frequency: 0.0e0
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.606425702811245e-5
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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Other
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
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allele num: 8498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
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SIO_000300: 3.807e0

ClippingRankSum
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VQSLOD
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SIO_000300: 7.3e-1

MQRankSum
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SIO_000300: -8.73e-1

MQ
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SIO_000300: 5.961e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
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European (Finnish)
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allele count: 0
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European (Non-Finnish)
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African
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East Asian
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allele count: 3
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FS
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

South Asian
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African
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Other
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Latino
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East Asian
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European (Finnish)
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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Other
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DP
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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Other
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European (Non-Finnish)
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Latino
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East Asian
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BaseQRankSum
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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East Asian
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European (Non-Finnish)
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allele num: 62508
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European (Finnish)
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FS
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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African
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Latino
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Other
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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South Asian
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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African
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East Asian
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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African
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South Asian
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European (Finnish)
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MQ
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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variant carriers: 8

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 6

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 584
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variant carriers: 1

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.560332871012483e-3
allele num: 5768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.823010411152286e-5
allele num: 11334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 5.428345834978287e-4
allele num: 60792
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.199040767386091e-4
allele num: 8340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.248581157775255e-3
allele num: 8810
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.908694e6

MQ
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SIO_000300: 5.766e1

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.05e-2

VQSLOD
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QD
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 178
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.284565108094519e-5
allele num: 63648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.527650473571647e-4
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.040366208905535e-4
allele num: 9612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.880063e6

MQRankSum
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SIO_000300: -4.85e-1

InbreedingCoeff
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VQSLOD
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SIO_000300: -3.04e0

BaseQRankSum
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SIO_000300: -1.221e0

QD
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SIO_000300: 8.17e0

MQ
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SIO_000300: 5.739e1

ClippingRankSum
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SIO_000300: 2.14e0

ReadPosRankSum
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SIO_000300: -1.777e0

FS
type: SiteQuality
SIO_000300: 4.695e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8997
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variant carriers: 9

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.624671916010499e-4
allele num: 11430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.42684766214178e-5
allele num: 63648
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

ReadPosRankSum
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SIO_000300: -1.777e0

QD
type: SiteQuality
SIO_000300: 8.17e0

FS
type: SiteQuality
SIO_000300: 4.695e0

DP
type: SiteQuality
SIO_000300: 1.880063e6

ClippingRankSum
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SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

InbreedingCoeff
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SIO_000300: 9.1e-3

MQ
type: SiteQuality
SIO_000300: 5.739e1

VQSLOD
type: SiteQuality
SIO_000300: -3.04e0

GenotypeDepth
all individuals: 67
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565827383189277e-5
allele num: 63864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.057e0

BaseQRankSum
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SIO_000300: 1.14e0

ReadPosRankSum
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SIO_000300: 5.43e-1

DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
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SIO_000300: 5.679999999999999e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 324
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.146e0

InbreedingCoeff
type: SiteQuality
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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South Asian
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Other
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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DP
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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MQ
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DP
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QD
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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South Asian
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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Latino
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South Asian
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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DP
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InbreedingCoeff
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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African
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East Asian
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European (Non-Finnish)
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MQ
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MQRankSum
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QD
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FS
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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QD
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DP
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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DP
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MQ
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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VQSLOD
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MQRankSum
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MQ
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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QD
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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African
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Latino
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FS
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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Other
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African
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Latino
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 11532
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South Asian
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African
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European (Non-Finnish)
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allele num: 64860
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East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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QD
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VQSLOD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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Other
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East Asian
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South Asian
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allele frequency: 2.426301103967002e-4
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European (Non-Finnish)
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African
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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QD
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16486
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -9.611e-1

DP
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MQRankSum
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QD
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ReadPosRankSum
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FS
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SIO_000300: 1.04e0

InbreedingCoeff
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SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.02e-1

BaseQRankSum
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SIO_000300: 3.7e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.6229235368447e-5
allele num: 64894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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MQ
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FS
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SIO_000300: 1.5151e1

BaseQRankSum
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SIO_000300: -4.2e-1

ClippingRankSum
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SIO_000300: -4.53e-1

ReadPosRankSum
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SIO_000300: 5.95e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540594669542443e-5
allele num: 64910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.808e0

QD
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SIO_000300: 1.093e1

VQSLOD
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SIO_000300: 6.53e-1

MQ
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SIO_000300: 5.943e1

BaseQRankSum
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SIO_000300: -2.7e-2

MQRankSum
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SIO_000300: -9.0e-2

ReadPosRankSum
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SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.917704e6

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64924
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
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SIO_000300: 4.12e0

ReadPosRankSum
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SIO_000300: 6.8e-2

VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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SIO_000300: 5.973e1

InbreedingCoeff
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SIO_000300: 2.3e-3

QD
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SIO_000300: 1.179e1

DP
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SIO_000300: 1.917859e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.079291762894534e-5
allele num: 64950
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.06e-1

VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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QD
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DP
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MQ
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SIO_000300: 5.906e1

ReadPosRankSum
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SIO_000300: 9.29e-1

GenotypeDepth
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variant carriers: 15

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8570
bin: 9.75e1
variant carriers: 225

African
type: Population
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allele frequency: 3.960396039603961e-4
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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East Asian
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South Asian
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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African
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East Asian
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Other
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European (Non-Finnish)
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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African
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Other
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East Asian
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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DP
type: SiteQuality
SIO_000300: 1.917039e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

GenotypeDepth
all individuals: 14779
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2204
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8426
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19315
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7641
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 310
bin: 6.25e1
variant carriers: 6

GenotypeDepth
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 546
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1225
bin: 5.25e1
variant carriers: 5

GenotypeDepth
all individuals: 164
bin: 6.75e1
variant carriers: 5

GenotypeDepth
all individuals: 420
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4137
bin: 4.25e1
variant carriers: 5

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 8

GenotypeDepth
all individuals: 85
bin: 7.75e1
variant carriers: 12

GenotypeDepth
all individuals: 633
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8443
bin: 9.75e1
variant carriers: 175

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 29
allele frequency: 3.373662168450442e-3
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 147
allele frequency: 8.906931652932623e-3
allele num: 16504
num of homozygotes: 5

African
type: Population
allele count: 2
allele frequency: 1.97667523225934e-4
allele num: 10118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.076639079469588e-5
allele num: 65006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.926868e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

GenotypeDepth
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7658
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14830
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4140
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 19370
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8450
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 550
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2214
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 636
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0