17-59155905-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155905
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155905
    reference: chr 17
allele count: 1
allele frequency: 9.171955827860732e-6
allele num: 109028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+15T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+15T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+15T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+15T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+15T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+15T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+15T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+15T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+15T>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

17-59155906-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155906
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155906
    reference: chr 17
allele count: 1
allele frequency: 9.207763986593496e-6
allele num: 108604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+16T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+16T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+16T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+16T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+16T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+16T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+16T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+16T>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+16T>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19374
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

17-59155910-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155910
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155910
    reference: chr 17
allele count: 1
allele frequency: 9.335324869305452e-6
allele num: 107120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+20G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+20G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+20G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+20G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+20G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+20G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+20G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+20G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+20G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17642
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

17-59155919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155919
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155919
    reference: chr 17
allele count: 1
allele frequency: 9.5697442964324e-6
allele num: 104496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+29G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+29G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+29G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+29G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+29G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+29G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+29G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+29G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+29G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22287
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

17-59155919-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155919
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155919
    reference: chr 17
allele count: 1
allele frequency: 9.5697442964324e-6
allele num: 104496
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+29G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+29G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+29G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+29G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+29G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+29G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+29G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+29G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+29G>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5288
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

17-59155928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155928
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155928
    reference: chr 17
allele count: 2
allele frequency: 1.968969047806568e-5
allele num: 101576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+38G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+38G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+38G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+38G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+38G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+38G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+38G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+38G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+38G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22859
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-59155936-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155936
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155936
    reference: chr 17
allele count: 76
allele frequency: 7.856921327406182e-4
allele num: 96730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+46T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+46T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+46T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+46T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+46T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+46T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+46T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+46T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+46T>C
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21035
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14204
  bin: 1.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9145
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

17-59155940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155940
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155940
    reference: chr 17
allele count: 1
allele frequency: 1.078422914330084e-5
allele num: 92728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+50C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+50C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+50C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+50C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+50C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+50C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+50C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+50C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+50C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20326
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

17-59155941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59155941
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59155941
    reference: chr 17
allele count: 5
allele frequency: 5.436318959706004e-5
allele num: 91974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2372+51G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1685+51G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2372+51G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.89+51G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1640+51G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2327+51G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2327+51G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.805+51G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2327+51G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11286
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20266
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13903
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

17-59161798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161798
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161798
    reference: chr 17
allele count: 4
allele frequency: 3.551073311908525e-5
allele num: 112642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1686-30A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1641-30A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2328-30A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2373-30A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2328-30A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.806-30A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.90-30A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2373-30A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2328-30A>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32400
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

17-59161805-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161805
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161805
    reference: chr 17
allele count: 1
allele frequency: 8.759175236059772e-6
allele num: 114166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.90-23A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2328-23A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1641-23A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1686-23A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.806-23A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2373-23A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2328-23A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2328-23A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2373-23A>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-59161821-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161821
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161821
    reference: chr 17
allele count: 1
allele frequency: 8.508900309723971e-6
allele num: 117524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.90-7A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2373-7A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2328-7A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1641-7A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1686-7A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2328-7A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2328-7A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.806-7A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2373-7A>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5140
  bin: 6.75e1
  variant carriers: 0
hgvs: c.2373-7A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-59161824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161824
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161824
    reference: chr 17
allele count: 2
allele frequency: 1.695950071229903e-5
allele num: 117928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1641-4G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2373-4G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2328-4G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2328-4G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1686-4G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.90-4G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2373-4G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2328-4G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.806-4G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2373-4G>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-59161838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161838
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161838
    reference: chr 17
allele count: 2
allele frequency: 1.676558360996546e-5
allele num: 119292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1696G>A
  hgvsp: ENSP00000468682.1:p.Val566Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2383G>A
  hgvsp: ENSP00000468592.1:p.Val795Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.816G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2338G>A
  hgvsp: ENSP00000385323.2:p.Val780Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2338G>A
  hgvsp: ENSP00000466078.1:p.Val780Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2383G>A
  hgvsp: ENSP00000375067.4:p.Val795Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2338G>A
  hgvsp: ENSP00000386173.2:p.Val780Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1651G>A
  hgvsp: ENSP00000464825.1:p.Val551Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.100G>A
  hgvsp: ENSP00000464711.1:p.Val34Ile
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val795Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

17-59161841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161841
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161841
    reference: chr 17
allele count: 1
allele frequency: 8.376331836762046e-6
allele num: 119384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.103C>T
  hgvsp: ENSP00000464711.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1654C>T
  hgvsp: ENSP00000464825.1:p.Arg552Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1699C>T
  hgvsp: ENSP00000468682.1:p.Arg567Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.819C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2341C>T
  hgvsp: ENSP00000386173.2:p.Arg781Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2386C>T
  hgvsp: ENSP00000468592.1:p.Arg796Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2341C>T
  hgvsp: ENSP00000466078.1:p.Arg781Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2386C>T
  hgvsp: ENSP00000375067.4:p.Arg796Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2341C>T
  hgvsp: ENSP00000385323.2:p.Arg781Cys
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg796Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-59161852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161852
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161852
    reference: chr 17
allele count: 1
allele frequency: 8.341814177747376e-6
allele num: 119878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2352C>T
  hgvsp: ENST00000407086.3:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1665C>T
  hgvsp: ENST00000588874.1:c.1665C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.830C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2352C>T
  hgvsp: ENST00000589222.1:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2397C>T
  hgvsp: ENST00000390652.5:c.2397C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.114C>T
  hgvsp: ENST00000587002.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2352C>T
  hgvsp: ENST00000408905.3:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1710C>T
  hgvsp: ENST00000585744.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2397C>T
  hgvsp: ENST00000588462.1:c.2397C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro799Pro
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

17-59161853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161853
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161853
    reference: chr 17
allele count: 5
allele frequency: 4.169863562064249e-5
allele num: 119908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1711G>A
  hgvsp: ENSP00000468682.1:p.Val571Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1666G>A
  hgvsp: ENSP00000464825.1:p.Val556Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.115G>A
  hgvsp: ENSP00000464711.1:p.Val39Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.831G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2353G>A
  hgvsp: ENSP00000385323.2:p.Val785Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2353G>A
  hgvsp: ENSP00000386173.2:p.Val785Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2398G>A
  hgvsp: ENSP00000375067.4:p.Val800Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2353G>A
  hgvsp: ENSP00000466078.1:p.Val785Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2398G>A
  hgvsp: ENSP00000468592.1:p.Val800Ile
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val800Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

17-59161873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161873
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161873
    reference: chr 17
allele count: 2
allele frequency: 1.665112561609165e-5
allele num: 120112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.8C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2418C>T
  hgvsp: ENST00000390652.5:c.2418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2373C>T
  hgvsp: ENST00000408905.3:c.2373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2373C>T
  hgvsp: ENST00000589222.1:c.2373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1686C>T
  hgvsp: ENST00000588874.1:c.1686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.135C>T
  hgvsp: ENST00000587002.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1731C>T
  hgvsp: ENST00000585744.1:c.1731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2418C>T
  hgvsp: ENST00000588462.1:c.2418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.851C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2373C>T
  hgvsp: ENST00000407086.3:c.2373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser806Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-59161874-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161874
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161874
    reference: chr 17
allele count: 2
allele frequency: 1.665306666222585e-5
allele num: 120098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2419C>A
  hgvsp: ENSP00000468592.1:p.Arg807Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2374C>A
  hgvsp: ENSP00000386173.2:p.Arg792Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1732C>A
  hgvsp: ENSP00000468682.1:p.Arg578Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2374C>A
  hgvsp: ENSP00000466078.1:p.Arg792Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1687C>A
  hgvsp: ENSP00000464825.1:p.Arg563Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.136C>A
  hgvsp: ENSP00000464711.1:p.Arg46Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2419C>A
  hgvsp: ENSP00000375067.4:p.Arg807Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2374C>A
  hgvsp: ENSP00000385323.2:p.Arg792Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.9C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.852C>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg807Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

17-59161874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161874
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161874
    reference: chr 17
allele count: 128
allele frequency: 1.065796266382454e-3
allele num: 120098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.852C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1687C>T
  hgvsp: ENSP00000464825.1:p.Arg563Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2374C>T
  hgvsp: ENSP00000466078.1:p.Arg792Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1732C>T
  hgvsp: ENSP00000468682.1:p.Arg578Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2374C>T
  hgvsp: ENSP00000385323.2:p.Arg792Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2419C>T
  hgvsp: ENSP00000468592.1:p.Arg807Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.136C>T
  hgvsp: ENSP00000464711.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2374C>T
  hgvsp: ENSP00000386173.2:p.Arg792Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2419C>T
  hgvsp: ENSP00000375067.4:p.Arg807Cys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.9C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13622
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 39620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg807Cys
num of homozygotes: 3
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-59161875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161875
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161875
    reference: chr 17
allele count: 1
allele frequency: 8.324869715788949e-6
allele num: 120122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1688G>A
  hgvsp: ENSP00000464825.1:p.Arg563His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1733G>A
  hgvsp: ENSP00000468682.1:p.Arg578His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2375G>A
  hgvsp: ENSP00000386173.2:p.Arg792His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.853G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2420G>A
  hgvsp: ENSP00000468592.1:p.Arg807His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.10G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2375G>A
  hgvsp: ENSP00000385323.2:p.Arg792His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2375G>A
  hgvsp: ENSP00000466078.1:p.Arg792His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2420G>A
  hgvsp: ENSP00000375067.4:p.Arg807His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.137G>A
  hgvsp: ENSP00000464711.1:p.Arg46His
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47041
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg807His
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

17-59161906-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161906
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161906
    reference: chr 17
allele count: 2
allele frequency: 1.669504824868944e-5
allele num: 119796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1719A>G
  hgvsp: ENST00000588874.1:c.1719A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2406A>G
  hgvsp: ENST00000407086.3:c.2406A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2451A>G
  hgvsp: ENST00000588462.1:c.2451A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.41A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.884A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2406A>G
  hgvsp: ENST00000589222.1:c.2406A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.168A>G
  hgvsp: ENST00000587002.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2406A>G
  hgvsp: ENST00000408905.3:c.2406A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1764A>G
  hgvsp: ENST00000585744.1:c.1764A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2451A>G
  hgvsp: ENST00000390652.5:c.2451A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr817Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-59161912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161912
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161912
    reference: chr 17
allele count: 1
allele frequency: 8.362742310458446e-6
allele num: 119578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1770T>C
  hgvsp: ENST00000585744.1:c.1770T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1725T>C
  hgvsp: ENST00000588874.1:c.1725T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.47T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.890T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2412T>C
  hgvsp: ENST00000407086.3:c.2412T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.174T>C
  hgvsp: ENST00000587002.1:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2412T>C
  hgvsp: ENST00000589222.1:c.2412T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2457T>C
  hgvsp: ENST00000588462.1:c.2457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2412T>C
  hgvsp: ENST00000408905.3:c.2412T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2457T>C
  hgvsp: ENST00000390652.5:c.2457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile819Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-59161919-GCCTCAGGTAGAAAACCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161919
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161902
    reference: chr 17
allele count: 1
allele frequency: 8.400961069946402e-6
allele num: 119034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2469_2470+15delAGGTAGAAAACCACCTC
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: GCCTCAGGTAGAAAACCA
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-59161920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161920
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161920
    reference: chr 17
allele count: 1
allele frequency: 8.402372830087217e-6
allele num: 119014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2420C>T
  hgvsp: ENSP00000466078.1:p.Ala807Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.898C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.182C>T
  hgvsp: ENSP00000464711.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2420C>T
  hgvsp: ENSP00000385323.2:p.Ala807Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2465C>T
  hgvsp: ENSP00000375067.4:p.Ala822Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2465C>T
  hgvsp: ENSP00000468592.1:p.Ala822Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2420C>T
  hgvsp: ENSP00000386173.2:p.Ala807Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.55C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1778C>T
  hgvsp: ENSP00000468682.1:p.Ala593Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1733C>T
  hgvsp: ENSP00000464825.1:p.Ala578Val
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala822Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/17-59161931-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161931
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161931
    reference: chr 17
allele count: 1
allele frequency: 8.479031355457952e-6
allele num: 117938
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2470+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2470+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2425+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.187+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2425+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2425+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.903+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1738+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1783+6A>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.60+6A>C
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35649
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5080
  bin: 6.75e1
  variant carriers: 0
hgvs: c.2470+6A>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-59161968-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59161968
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59161968
    reference: chr 17
allele count: 3
allele frequency: 2.66728310542881e-5
allele num: 112474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1783+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2425+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2425+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1738+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2470+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588008
  gene symbol: BCAS3
  hgvsc: ENST00000588008.1:n.60+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.903+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2425+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.187+43A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2470+43A>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13415
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4359
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-59445638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445638
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445638
    reference: chr 17
allele count: 66
allele frequency: 5.899177690382553e-4
allele num: 111880
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-573A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471-50T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.497+40T>C
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28740
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

17-59445643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445643
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445643
    reference: chr 17
allele count: 1
allele frequency: 8.934474563550918e-6
allele num: 111926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.497+45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426-45C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-578G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-59445659-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445659
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445659
    reference: chr 17
allele count: 441
allele frequency: 3.922440629725162e-3
allele num: 112430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-594G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.498-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904-29C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784-29C>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 12015
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9623
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 28857
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
num of homozygotes: 10
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-59445662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445662
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445662
    reference: chr 17
allele count: 871
allele frequency: 7.73713290813154e-3
allele num: 112574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.498-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-597G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471-26C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426-26C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 9632
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29066
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
num of homozygotes: 22
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/17-59445662-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445662
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445662
    reference: chr 17
allele count: 1
allele frequency: 8.883045818750333e-6
allele num: 112574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.498-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-597G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471-26C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254-26C>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

17-59445672-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445672
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445672
    reference: chr 17
allele count: 3
allele frequency: 2.643824027072758e-5
allele num: 113472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-607G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.498-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254-16C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426-16C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-59445674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445674
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445674
    reference: chr 17
allele count: 1
allele frequency: 8.785956527087104e-6
allele num: 113818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-609G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.498-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471-14C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784-14C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

17-59445675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445675
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445675
    reference: chr 17
allele count: 16
allele frequency: 1.402008377000052e-4
allele num: 114122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.498-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-610C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784-13G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426-13G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29628
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-59445688-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445688
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445688
    reference: chr 17
allele count: 1
allele frequency: 8.608518990392892e-6
allele num: 116164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2426G>T
  hgvsp: ENSP00000385323.2:p.Gly809Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.498G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.936G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-623C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1739G>T
  hgvsp: ENSP00000464825.1:p.Gly580Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2471G>T
  hgvsp: ENSP00000468592.1:p.Gly824Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2471G>T
  hgvsp: ENSP00000375067.4:p.Gly824Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1072G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2426G>T
  hgvsp: ENSP00000386173.2:p.Gly809Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.467G>T
  hgvsp: ENSP00000464711.1:p.Gly156Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.904G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2426G>T
  hgvsp: ENSP00000466078.1:p.Gly809Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.254G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1784G>T
  hgvsp: ENSP00000468682.1:p.Gly595Val
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly824Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-59445691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445691
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445691
    reference: chr 17
allele count: 1
allele frequency: 8.578536501672815e-6
allele num: 116570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.257C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2429C>T
  hgvsp: ENSP00000466078.1:p.Thr810Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1787C>T
  hgvsp: ENSP00000468682.1:p.Thr596Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2474C>T
  hgvsp: ENSP00000468592.1:p.Thr825Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2429C>T
  hgvsp: ENSP00000386173.2:p.Thr810Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1742C>T
  hgvsp: ENSP00000464825.1:p.Thr581Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.907C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.470C>T
  hgvsp: ENSP00000464711.1:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-626G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.501C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1075C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2429C>T
  hgvsp: ENSP00000385323.2:p.Thr810Ile
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.939C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2474C>T
  hgvsp: ENSP00000375067.4:p.Thr825Ile
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr825Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

17-59445696-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445696
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445696
    reference: chr 17
allele count: 1
allele frequency: 8.529366609235598e-6
allele num: 117242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1792G>A
  hgvsp: ENSP00000468682.1:p.Asp598Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.944G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-631C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2434G>A
  hgvsp: ENSP00000386173.2:p.Asp812Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.912G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2479G>A
  hgvsp: ENSP00000375067.4:p.Asp827Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.262G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2479G>A
  hgvsp: ENSP00000468592.1:p.Asp827Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1747G>A
  hgvsp: ENSP00000464825.1:p.Asp583Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1080G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.475G>A
  hgvsp: ENSP00000464711.1:p.Asp159Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.506G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2434G>A
  hgvsp: ENSP00000466078.1:p.Asp812Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2434G>A
  hgvsp: ENSP00000385323.2:p.Asp812Asn
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp827Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-59445698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445698
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445698
    reference: chr 17
allele count: 1
allele frequency: 8.508031581813232e-6
allele num: 117536
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2481C>T
  hgvsp: ENST00000390652.5:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2481C>T
  hgvsp: ENST00000588462.1:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2436C>T
  hgvsp: ENST00000407086.3:c.2436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.477C>T
  hgvsp: ENST00000587002.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-633G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1749C>T
  hgvsp: ENST00000588874.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.508C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.946C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2436C>T
  hgvsp: ENST00000408905.3:c.2436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1794C>T
  hgvsp: ENST00000585744.1:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585979
  gene symbol: BCAS3
  hgvsc: ENST00000585979.1:n.914C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1082C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2436C>T
  hgvsp: ENST00000589222.1:c.2436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.264C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp827Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-59445704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445704
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445704
    reference: chr 17
allele count: 3
allele frequency: 2.534297492735014e-5
allele num: 118376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.483C>T
  hgvsp: ENST00000587002.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1755C>T
  hgvsp: ENST00000588874.1:c.1755C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.514C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2442C>T
  hgvsp: ENST00000407086.3:c.2442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1088C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1800C>T
  hgvsp: ENST00000585744.1:c.1800C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.270C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2442C>T
  hgvsp: ENST00000589222.1:c.2442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.952C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2487C>T
  hgvsp: ENST00000588462.1:c.2487C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-639G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2442C>T
  hgvsp: ENST00000408905.3:c.2442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2487C>T
  hgvsp: ENST00000390652.5:c.2487C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser829Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

17-59445705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445705
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445705
    reference: chr 17
allele count: 12
allele frequency: 1.010679513526261e-4
allele num: 118732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2443G>A
  hgvsp: ENSP00000385323.2:p.Val815Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2443G>A
  hgvsp: ENSP00000386173.2:p.Val815Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.484G>A
  hgvsp: ENSP00000464711.1:p.Val162Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2443G>A
  hgvsp: ENSP00000466078.1:p.Val815Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2488G>A
  hgvsp: ENSP00000375067.4:p.Val830Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1801G>A
  hgvsp: ENSP00000468682.1:p.Val601Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.953G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.271G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1756G>A
  hgvsp: ENSP00000464825.1:p.Val586Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2488G>A
  hgvsp: ENSP00000468592.1:p.Val830Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1089G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.515G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-640C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val830Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-59445711-C-CTGCTGGAGGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445711
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445722
    reference: chr 17
allele count: 1
allele frequency: 8.381246123673667e-6
allele num: 119314
alternate allele: CTGCTGGAGGTG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsp: ENSP00000464825.1:p.Gly593TrpfsTer58
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsp: ENSP00000468592.1:p.Gly837TrpfsTer53
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsp: ENSP00000464711.1:p.Gly169TrpfsTer?
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsp: ENSP00000468682.1:p.Gly608TrpfsTer58
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsp: ENSP00000466078.1:p.Gly822TrpfsTer53
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsp: ENSP00000385323.2:p.Gly822TrpfsTer58
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsp: ENSP00000375067.4:p.Gly837TrpfsTer58
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsp: ENSP00000386173.2:p.Gly822TrpfsTer53
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30461
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly837TrpfsTer58
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

17-59445747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445747
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445747
    reference: chr 17
allele count: 6
allele frequency: 4.986950812041824e-5
allele num: 120314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2530G>A
  hgvsp: ENSP00000468592.1:p.Gly844Arg
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1798G>A
  hgvsp: ENSP00000464825.1:p.Gly600Arg
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1843G>A
  hgvsp: ENSP00000468682.1:p.Gly615Arg
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.526G>A
  hgvsp: ENSP00000464711.1:p.Gly176Arg
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2485G>A
  hgvsp: ENSP00000386173.2:p.Gly829Arg
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.995G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2485G>A
  hgvsp: ENSP00000385323.2:p.Gly829Arg
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.313G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1131G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2530G>A
  hgvsp: ENSP00000375067.4:p.Gly844Arg
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2485G>A
  hgvsp: ENSP00000466078.1:p.Gly829Arg
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-682C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.557G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly844Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-59445754-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445754
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445754
    reference: chr 17
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.533G>A
  hgvsp: ENSP00000464711.1:p.Arg178Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1138G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2492G>A
  hgvsp: ENSP00000466078.1:p.Arg831Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2537G>A
  hgvsp: ENSP00000468592.1:p.Arg846Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2537G>A
  hgvsp: ENSP00000375067.4:p.Arg846Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2492G>A
  hgvsp: ENSP00000385323.2:p.Arg831Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2492G>A
  hgvsp: ENSP00000386173.2:p.Arg831Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1805G>A
  hgvsp: ENSP00000464825.1:p.Arg602Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-689C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1850G>A
  hgvsp: ENSP00000468682.1:p.Arg617Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1002G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.320G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.564G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg846Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

17-59445759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445759
    reference: chr 17
allele count: 24
allele frequency: 1.995543286659793e-4
allele num: 120268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2542A>G
  hgvsp: ENSP00000468592.1:p.Met848Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.569A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2497A>G
  hgvsp: ENSP00000385323.2:p.Met833Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1143A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2497A>G
  hgvsp: ENSP00000386173.2:p.Met833Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1855A>G
  hgvsp: ENSP00000468682.1:p.Met619Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2497A>G
  hgvsp: ENSP00000466078.1:p.Met833Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.325A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1810A>G
  hgvsp: ENSP00000464825.1:p.Met604Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.538A>G
  hgvsp: ENSP00000464711.1:p.Met180Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2542A>G
  hgvsp: ENSP00000375067.4:p.Met848Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-694T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1007A>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Met848Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

17-59445760-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445760
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445760
    reference: chr 17
allele count: 2
allele frequency: 1.662980393461161e-5
allele num: 120266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2498T>C
  hgvsp: ENSP00000386173.2:p.Met833Thr
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1144T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1811T>C
  hgvsp: ENSP00000464825.1:p.Met604Thr
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2498T>C
  hgvsp: ENSP00000466078.1:p.Met833Thr
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2543T>C
  hgvsp: ENSP00000375067.4:p.Met848Thr
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2543T>C
  hgvsp: ENSP00000468592.1:p.Met848Thr
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.326T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2498T>C
  hgvsp: ENSP00000385323.2:p.Met833Thr
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1008T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1856T>C
  hgvsp: ENSP00000468682.1:p.Met619Thr
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.570T>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.539T>C
  hgvsp: ENSP00000464711.1:p.Met180Thr
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-695A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Met848Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-59445763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445763
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445763
    reference: chr 17
allele count: 1
allele frequency: 8.315455104857889e-6
allele num: 120258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.329C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.542C>T
  hgvsp: ENSP00000464711.1:p.Ser181Phe
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2501C>T
  hgvsp: ENSP00000466078.1:p.Ser834Phe
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2501C>T
  hgvsp: ENSP00000386173.2:p.Ser834Phe
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1011C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.573C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1814C>T
  hgvsp: ENSP00000464825.1:p.Ser605Phe
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2501C>T
  hgvsp: ENSP00000385323.2:p.Ser834Phe
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1147C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-698G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2546C>T
  hgvsp: ENSP00000375067.4:p.Ser849Phe
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2546C>T
  hgvsp: ENSP00000468592.1:p.Ser849Phe
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1859C>T
  hgvsp: ENSP00000468682.1:p.Ser620Phe
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser849Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-59445768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445768
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445768
    reference: chr 17
allele count: 4
allele frequency: 3.32723340542339e-5
allele num: 120220
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2551A>G
  hgvsp: ENSP00000375067.4:p.Met851Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.578A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2506A>G
  hgvsp: ENSP00000466078.1:p.Met836Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1819A>G
  hgvsp: ENSP00000464825.1:p.Met607Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-703T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2551A>G
  hgvsp: ENSP00000468592.1:p.Met851Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1864A>G
  hgvsp: ENSP00000468682.1:p.Met622Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1016A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.334A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2506A>G
  hgvsp: ENSP00000385323.2:p.Met836Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2506A>G
  hgvsp: ENSP00000386173.2:p.Met836Val
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1152A>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464711
  ensembl transcript: ENST00000587002
  gene symbol: BCAS3
  hgvsc: ENST00000587002.1:c.547A>G
  hgvsp: ENSP00000464711.1:p.Met183Val
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15546
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met851Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

17-59445778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445778
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445778
    reference: chr 17
allele count: 3
allele frequency: 2.499083669321249e-5
allele num: 120044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2561C>T
  hgvsp: ENSP00000468592.1:p.Thr854Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1026C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1874C>T
  hgvsp: ENSP00000468682.1:p.Thr625Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2516C>T
  hgvsp: ENSP00000386173.2:p.Thr839Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2516C>T
  hgvsp: ENSP00000466078.1:p.Thr839Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1162C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1829C>T
  hgvsp: ENSP00000464825.1:p.Thr610Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-713G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2561C>T
  hgvsp: ENSP00000375067.4:p.Thr854Met
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.588C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.344C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2516C>T
  hgvsp: ENSP00000385323.2:p.Thr839Met
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr854Met
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/17-59445792-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445792
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445792
    reference: chr 17
allele count: 1
allele frequency: 8.34599142032082e-6
allele num: 119818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1843C>A
  hgvsp: ENST00000588874.1:c.1843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.602C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2575C>A
  hgvsp: ENST00000588462.1:c.2575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.358C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2530C>A
  hgvsp: ENST00000407086.3:c.2530C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1176C>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1888C>A
  hgvsp: ENST00000585744.1:c.1888C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2530C>A
  hgvsp: ENST00000408905.3:c.2530C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2530C>A
  hgvsp: ENST00000589222.1:c.2530C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2575C>A
  hgvsp: ENST00000390652.5:c.2575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-727G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1040C>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30386
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg859Arg
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

17-59445792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445792
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445792
    reference: chr 17
allele count: 1
allele frequency: 8.34599142032082e-6
allele num: 119818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1888C>T
  hgvsp: ENSP00000468682.1:p.Arg630Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2530C>T
  hgvsp: ENSP00000466078.1:p.Arg844Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2530C>T
  hgvsp: ENSP00000386173.2:p.Arg844Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1176C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.602C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.358C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2575C>T
  hgvsp: ENSP00000375067.4:p.Arg859Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2530C>T
  hgvsp: ENSP00000385323.2:p.Arg844Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2575C>T
  hgvsp: ENSP00000468592.1:p.Arg859Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1843C>T
  hgvsp: ENSP00000464825.1:p.Arg615Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-727G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1040C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg859Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

17-59445793-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445793
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445793
    reference: chr 17
allele count: 4
allele frequency: 3.338619480844671e-5
allele num: 119810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2576G>A
  hgvsp: ENSP00000468592.1:p.Arg859Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.359G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.603G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1889G>A
  hgvsp: ENSP00000468682.1:p.Arg630Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2531G>A
  hgvsp: ENSP00000385323.2:p.Arg844Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1041G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-728C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1844G>A
  hgvsp: ENSP00000464825.1:p.Arg615Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2576G>A
  hgvsp: ENSP00000375067.4:p.Arg859Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2531G>A
  hgvsp: ENSP00000466078.1:p.Arg844Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2531G>A
  hgvsp: ENSP00000386173.2:p.Arg844Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1177G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9577
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg859Gln
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-59445795-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445795
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445795
    reference: chr 17
allele count: 9
allele frequency: 7.512771711910248e-5
allele num: 119796
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-730C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1179G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2533G>C
  hgvsp: ENSP00000466078.1:p.Glu845Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2578G>C
  hgvsp: ENSP00000468592.1:p.Glu860Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1891G>C
  hgvsp: ENSP00000468682.1:p.Glu631Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2533G>C
  hgvsp: ENSP00000386173.2:p.Glu845Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2533G>C
  hgvsp: ENSP00000385323.2:p.Glu845Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1043G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2578G>C
  hgvsp: ENSP00000375067.4:p.Glu860Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1846G>C
  hgvsp: ENSP00000464825.1:p.Glu616Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.361G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.605G>C
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu860Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

17-59445797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445797
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445797
    reference: chr 17
allele count: 1
allele frequency: 8.352404657300837e-6
allele num: 119726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1848G>A
  hgvsp: ENST00000588874.1:c.1848G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2535G>A
  hgvsp: ENST00000589222.1:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-732C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.363G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1893G>A
  hgvsp: ENST00000585744.1:c.1893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2535G>A
  hgvsp: ENST00000407086.3:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1181G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2580G>A
  hgvsp: ENST00000390652.5:c.2580G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2580G>A
  hgvsp: ENST00000588462.1:c.2580G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2535G>A
  hgvsp: ENST00000408905.3:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1045G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.607G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu860Glu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-59445797-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445797
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445797
    reference: chr 17
allele count: 3
allele frequency: 2.505721397190251e-5
allele num: 119726
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-732C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1848G>T
  hgvsp: ENSP00000464825.1:p.Glu616Asp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2535G>T
  hgvsp: ENSP00000385323.2:p.Glu845Asp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2535G>T
  hgvsp: ENSP00000386173.2:p.Glu845Asp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.607G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2535G>T
  hgvsp: ENSP00000466078.1:p.Glu845Asp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1893G>T
  hgvsp: ENSP00000468682.1:p.Glu631Asp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2580G>T
  hgvsp: ENSP00000375067.4:p.Glu860Asp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.363G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1181G>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2580G>T
  hgvsp: ENSP00000468592.1:p.Glu860Asp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1045G>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu860Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

17-59445799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445799
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445799
    reference: chr 17
allele count: 1
allele frequency: 8.357709987463435e-6
allele num: 119650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2537G>A
  hgvsp: ENSP00000386173.2:p.Arg846Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1047G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2537G>A
  hgvsp: ENSP00000466078.1:p.Arg846Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2582G>A
  hgvsp: ENSP00000468592.1:p.Arg861Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1850G>A
  hgvsp: ENSP00000464825.1:p.Arg617Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.365G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2537G>A
  hgvsp: ENSP00000385323.2:p.Arg846Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1183G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1895G>A
  hgvsp: ENSP00000468682.1:p.Arg632Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2582G>A
  hgvsp: ENSP00000375067.4:p.Arg861Gln
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.609G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-734C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg861Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

17-59445804-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445804
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445804
    reference: chr 17
allele count: 1
allele frequency: 8.364281173675934e-6
allele num: 119556
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-739C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2587G>C
  hgvsp: ENSP00000468592.1:p.Ala863Pro
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.370G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1855G>C
  hgvsp: ENSP00000464825.1:p.Ala619Pro
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1900G>C
  hgvsp: ENSP00000468682.1:p.Ala634Pro
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1188G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2542G>C
  hgvsp: ENSP00000466078.1:p.Ala848Pro
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2587G>C
  hgvsp: ENSP00000375067.4:p.Ala863Pro
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1052G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.614G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2542G>C
  hgvsp: ENSP00000385323.2:p.Ala848Pro
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2542G>C
  hgvsp: ENSP00000386173.2:p.Ala848Pro
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala863Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

17-59445806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445806
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445806
    reference: chr 17
allele count: 4
allele frequency: 3.348569323756425e-5
allele num: 119454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1857C>T
  hgvsp: ENST00000588874.1:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2544C>T
  hgvsp: ENST00000407086.3:c.2544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2544C>T
  hgvsp: ENST00000589222.1:c.2544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2544C>T
  hgvsp: ENST00000408905.3:c.2544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1902C>T
  hgvsp: ENST00000585744.1:c.1902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1054C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.616C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1190C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2589C>T
  hgvsp: ENST00000588462.1:c.2589C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2589C>T
  hgvsp: ENST00000390652.5:c.2589C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-741G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.372C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala863Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-59445807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445807
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445807
    reference: chr 17
allele count: 2
allele frequency: 1.67484549550304e-5
allele num: 119414
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-742C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2590G>A
  hgvsp: ENSP00000468592.1:p.Asp864Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2545G>A
  hgvsp: ENSP00000385323.2:p.Asp849Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.617G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1191G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1858G>A
  hgvsp: ENSP00000464825.1:p.Asp620Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1903G>A
  hgvsp: ENSP00000468682.1:p.Asp635Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2545G>A
  hgvsp: ENSP00000386173.2:p.Asp849Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2545G>A
  hgvsp: ENSP00000466078.1:p.Asp849Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2590G>A
  hgvsp: ENSP00000375067.4:p.Asp864Asn
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1055G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.373G>A
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp864Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

17-59445807-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445807
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445807
    reference: chr 17
allele count: 1
allele frequency: 8.374227477515199e-6
allele num: 119414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1055G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.373G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1903G>C
  hgvsp: ENSP00000468682.1:p.Asp635His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2545G>C
  hgvsp: ENSP00000386173.2:p.Asp849His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1858G>C
  hgvsp: ENSP00000464825.1:p.Asp620His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2545G>C
  hgvsp: ENSP00000466078.1:p.Asp849His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2590G>C
  hgvsp: ENSP00000468592.1:p.Asp864His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.617G>C
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-742C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2590G>C
  hgvsp: ENSP00000375067.4:p.Asp864His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2545G>C
  hgvsp: ENSP00000385323.2:p.Asp849His
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1191G>C
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp864His
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

17-59445809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445809
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445809
    reference: chr 17
allele count: 1
allele frequency: 8.382791804982731e-6
allele num: 119292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1905C>T
  hgvsp: ENST00000585744.1:c.1905C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1193C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2592C>T
  hgvsp: ENST00000390652.5:c.2592C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.375C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2547C>T
  hgvsp: ENST00000407086.3:c.2547C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1860C>T
  hgvsp: ENST00000588874.1:c.1860C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2547C>T
  hgvsp: ENST00000589222.1:c.2547C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2592C>T
  hgvsp: ENST00000588462.1:c.2592C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1057C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-744G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.619C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2547C>T
  hgvsp: ENST00000408905.3:c.2547C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp864Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

17-59445818-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445818
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445818
    reference: chr 17
allele count: 2
allele frequency: 1.682736803136621e-5
allele num: 118854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.384C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2601C>G
  hgvsp: ENST00000390652.5:c.2601C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2556C>G
  hgvsp: ENST00000408905.3:c.2556C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2601C>G
  hgvsp: ENST00000588462.1:c.2601C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2556C>G
  hgvsp: ENST00000407086.3:c.2556C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1869C>G
  hgvsp: ENST00000588874.1:c.1869C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-753G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2556C>G
  hgvsp: ENST00000589222.1:c.2556C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1914C>G
  hgvsp: ENST00000585744.1:c.1914C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1202C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.628C>G
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1066C>G
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala867Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

17-59445818-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445818
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445818
    reference: chr 17
allele count: 1
allele frequency: 8.413684015683106e-6
allele num: 118854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1202C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2556C>T
  hgvsp: ENST00000589222.1:c.2556C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2601C>T
  hgvsp: ENST00000588462.1:c.2601C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2556C>T
  hgvsp: ENST00000408905.3:c.2556C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.628C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2601C>T
  hgvsp: ENST00000390652.5:c.2601C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1066C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1869C>T
  hgvsp: ENST00000588874.1:c.1869C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-753G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.384C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2556C>T
  hgvsp: ENST00000407086.3:c.2556C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1914C>T
  hgvsp: ENST00000585744.1:c.1914C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala867Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-59445819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445819
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445819
    reference: chr 17
allele count: 2
allele frequency: 1.686113171916099e-5
allele num: 118616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2557G>A
  hgvsp: ENSP00000386173.2:p.Glu853Lys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1870G>A
  hgvsp: ENSP00000464825.1:p.Glu624Lys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.385G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2557G>A
  hgvsp: ENSP00000385323.2:p.Glu853Lys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2602G>A
  hgvsp: ENSP00000375067.4:p.Glu868Lys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.629G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2557G>A
  hgvsp: ENSP00000466078.1:p.Glu853Lys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1067G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2602G>A
  hgvsp: ENSP00000468592.1:p.Glu868Lys
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-754C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1203G>A
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1915G>A
  hgvsp: ENSP00000468682.1:p.Glu639Lys
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu868Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

17-59445824-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445824
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445824
    reference: chr 17
allele count: 3
allele frequency: 2.539532048894457e-5
allele num: 118132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.634A>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1920A>T
  hgvsp: ENST00000585744.1:c.1920A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2562A>T
  hgvsp: ENST00000407086.3:c.2562A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2562A>T
  hgvsp: ENST00000589222.1:c.2562A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1072A>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2607A>T
  hgvsp: ENST00000390652.5:c.2607A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2607A>T
  hgvsp: ENST00000588462.1:c.2607A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2562A>T
  hgvsp: ENST00000408905.3:c.2562A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1875A>T
  hgvsp: ENST00000588874.1:c.1875A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-759T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1208A>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.390A>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser869Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-59445825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445825
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445825
    reference: chr 17
allele count: 1
allele frequency: 8.469695429752346e-6
allele num: 118068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2563C>T
  hgvsp: ENSP00000386173.2:p.Pro855Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1921C>T
  hgvsp: ENSP00000468682.1:p.Pro641Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2563C>T
  hgvsp: ENSP00000466078.1:p.Pro855Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1876C>T
  hgvsp: ENSP00000464825.1:p.Pro626Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2608C>T
  hgvsp: ENSP00000468592.1:p.Pro870Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2563C>T
  hgvsp: ENSP00000385323.2:p.Pro855Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1073C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.635C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.391C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1209C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2608C>T
  hgvsp: ENSP00000375067.4:p.Pro870Ser
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-760G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro870Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

17-59445830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445830
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445830
    reference: chr 17
allele count: 23
allele frequency: 1.963563098673314e-4
allele num: 117134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468682
  ensembl transcript: ENST00000585744
  gene symbol: BCAS3
  hgvsc: ENST00000585744.1:c.1926C>T
  hgvsp: ENST00000585744.1:c.1926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000585812
  gene symbol: BCAS3
  hgvsc: ENST00000585812.1:n.1078C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2568C>T
  hgvsp: ENST00000407086.3:c.2568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2568C>T
  hgvsp: ENST00000589222.1:c.2568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000592702
  gene symbol: BCAS3
  hgvsc: ENST00000592702.1:n.1214C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1881C>T
  hgvsp: ENST00000588874.1:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-765G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2568C>T
  hgvsp: ENST00000408905.3:c.2568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000588569
  gene symbol: BCAS3
  hgvsc: ENST00000588569.1:n.396C>T
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2613C>T
  hgvsp: ENST00000588462.1:c.2613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2613C>T
  hgvsp: ENST00000390652.5:c.2613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141376
  ensembl transcript: ENST00000587294
  gene symbol: BCAS3
  hgvsc: ENST00000587294.1:n.640C>T
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14893
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ser871Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

17-59445831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59445831
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 59445831
    reference: chr 17
allele count: 1
allele frequency: 8.547300762419228e-6
allele num: 116996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000386173
  ensembl transcript: ENST00000408905
  gene symbol: BCAS3
  hgvsc: ENST00000408905.3:c.2569C>T
  hgvsp: ENSP00000386173.2:p.Arg857Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000385323
  ensembl transcript: ENST00000407086
  gene symbol: BCAS3
  hgvsc: ENST00000407086.3:c.2569C>T
  hgvsp: ENSP00000385323.2:p.Arg857Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267131
  ensembl transcript: ENST00000585765
  gene symbol: RP11-332H18.5
  hgvsc: ENST00000585765.1:n.29-766G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000464825
  ensembl transcript: ENST00000588874
  gene symbol: BCAS3
  hgvsc: ENST00000588874.1:c.1882C>T
  hgvsp: ENSP00000464825.1:p.Arg628Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000375067
  ensembl transcript: ENST00000390652
  gene symbol: BCAS3
  hgvsc: ENST00000390652.5:c.2614C>T
  hgvsp: ENSP00000375067.4:p.Arg872Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000468592
  ensembl transcript: ENST00000588462
  gene symbol: BCAS3
  hgvsc: ENST00000588462.1:c.2614C>T
  hgvsp: ENSP00000468592.1:p.Arg872Trp
  variant of: http://identifiers.org/hgnc/14347
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141376
  ensembl protein: ENSP00000466078
  ensembl transcript: ENST00000589222
  gene symbol: BCAS3
  hgvsc: ENST00000589222.1:c.2569C>T
  hgvsp: ENSP00000466078.1:p.Arg857Trp
  variant of: http://identifiers.org/hgnc/14347
canonical: true
consequence: missense
filter: PASS
hgvs: p.Arg872Trp
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13668
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.087192868014786e-4
allele num: 9198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.751e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

DP
type: SiteQuality
SIO_000300: 1.339171e6

MQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 3.055e0

QD
type: SiteQuality
SIO_000300: 1.668e1

GenotypeQuality
all individuals: 780
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637143512000262e-5
allele num: 61082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.043e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.45e-1

DP
type: SiteQuality
SIO_000300: 1.323188e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.533e1

GenotypeQuality
all individuals: 482
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.845598619174644e-5
allele num: 12746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.124e0

QD
type: SiteQuality
SIO_000300: 9.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 3.245e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.246e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.261375e6

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18395
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.265829062654984e-5
allele num: 12098
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -1.601e0

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.159007e6

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2706e1

QD
type: SiteQuality
SIO_000300: 1.246e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59080
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.118568232662192e-4
allele num: 8940
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.159007e6

QD
type: SiteQuality
SIO_000300: 1.246e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.601e0

FS
type: SiteQuality
SIO_000300: 1.2706e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.470294280955025e-5
allele num: 57632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8818
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.166e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

DP
type: SiteQuality
SIO_000300: 1.094583e6

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 75

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 72
allele frequency: 7.957559681697613e-3
allele num: 9048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.770083102493075e-3
allele num: 722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.617683235655886e-5
allele num: 55284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

DP
type: SiteQuality
SIO_000300: 1.053101e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.991e0

FS
type: SiteQuality
SIO_000300: 1.724e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 484
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.881396748946418e-5
allele num: 53152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

QD
type: SiteQuality
SIO_000300: 1.511e1

DP
type: SiteQuality
SIO_000300: 1.044331e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.107481559536354e-4
allele num: 9490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.691735599908932e-5
allele num: 52708
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.04287e6

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.444390124663896e-4
allele num: 8182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.45000945000945e-5
allele num: 10582
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.104728236853734e-4
allele num: 9052
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

DP
type: SiteQuality
SIO_000300: 1.310908e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.12e-1

FS
type: SiteQuality
SIO_000300: 2.658e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63764
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.304056568663938e-5
allele num: 10748
num of homozygotes: 0

African
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South Asian
type: Population
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Other
type: Population
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0793e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 318
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65380
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.324310650139134e-5
allele num: 15812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

MQRankSum
type: SiteQuality
SIO_000300: -1.121e0

QD
type: SiteQuality
SIO_000300: 1.345e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

DP
type: SiteQuality
SIO_000300: 1.424834e6

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5164
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5253668507276e-5
allele num: 65558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.28693574751666e-5
allele num: 15906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.59e-1

FS
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.431658e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.653e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

QD
type: SiteQuality
SIO_000300: 1.056e1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.021239312365933e-5
allele num: 66198
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

DP
type: SiteQuality
SIO_000300: 1.454082e6

FS
type: SiteQuality
SIO_000300: 5.787e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 1.527e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 2.25e1
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GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46233
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.832361773538245e-5
allele num: 11322
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

FS
type: SiteQuality
SIO_000300: 6.489e0

DP
type: SiteQuality
SIO_000300: 1.457039e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e0

VQSLOD
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
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variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1543
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46751
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variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5436
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505933377507379e-5
allele num: 66404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 1.465494e6

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46880
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.516711833785005e-5
allele num: 66420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.0315659170621e-4
allele num: 9694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.466607e6

FS
type: SiteQuality
SIO_000300: 1.196e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

GenotypeQuality
all individuals: 550
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 1116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220703125e-4
allele num: 16384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 9.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.470602e6

QD
type: SiteQuality
SIO_000300: 1.219e1

FS
type: SiteQuality
SIO_000300: 3.682e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.858e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1538
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 41
bin: 4.25e1
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GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1110
bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.47851e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.86e-2

FS
type: SiteQuality
SIO_000300: 3.404e0

QD
type: SiteQuality
SIO_000300: 1.511e1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 9.75e1
variant carriers: 125

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 126
allele frequency: 7.687614399023795e-3
allele num: 16390
num of homozygotes: 3

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.47851e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: -8.47e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.86e-2

FS
type: SiteQuality
SIO_000300: 3.404e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.511e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
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GenotypeQuality
all individuals: 1118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.75e1
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GenotypeQuality
all individuals: 1552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 5453
bin: 6.75e1
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GenotypeQuality
all individuals: 12
bin: 2.5e0
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GenotypeQuality
all individuals: 426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

FS
type: SiteQuality
SIO_000300: 4.923e0

VQSLOD
type: SiteQuality
SIO_000300: -1.131e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.474945e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.575e1

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 775
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
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GenotypeQuality
all individuals: 545
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
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variant carriers: 0

GenotypeQuality
all individuals: 425
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variant carriers: 0

GenotypeQuality
all individuals: 46668
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.757160428747145e-4
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.469677e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.259e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
all individuals: 1097
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5321
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509069507741527e-5
allele num: 66266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0114e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.181e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 1.465108e6

GenotypeQuality
all individuals: 278
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 45031
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variant carriers: 0

GenotypeQuality
all individuals: 5209
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 543
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1647
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 1679
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variant carriers: 0

GenotypeQuality
all individuals: 407
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.454035e6

MQ
type: SiteQuality
SIO_000300: 5.478e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

FS
type: SiteQuality
SIO_000300: 1.378e0

VQSLOD
type: SiteQuality
SIO_000300: -7.551e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.92e0

QD
type: SiteQuality
SIO_000300: 2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 5203
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 45211
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variant carriers: 0

GenotypeQuality
all individuals: 365
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66030
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

DP
type: SiteQuality
SIO_000300: 1.453774e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.742e1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

GenotypeQuality
all individuals: 1440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527417137620284e-5
allele num: 65470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

FS
type: SiteQuality
SIO_000300: 9.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.424193e6

QD
type: SiteQuality
SIO_000300: 1.198e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 538
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GenotypeQuality
all individuals: 7002
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.197544285988361e-5
allele num: 62548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.585288522511097e-4
allele num: 6308
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.458e0

QD
type: SiteQuality
SIO_000300: 1.083e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

DP
type: SiteQuality
SIO_000300: 1.179453e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.98e-1

GenotypeDepth
all individuals: 107
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 79
bin: 7.75e1
variant carriers: 3

GenotypeDepth
all individuals: 443
bin: 4.75e1
variant carriers: 10

GenotypeDepth
all individuals: 110
bin: 9.75e1
variant carriers: 9

GenotypeDepth
all individuals: 3127
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 66

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 1110
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
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variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38121
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 63
allele frequency: 6.525792417650715e-3
allele num: 9654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55574224462491e-5
allele num: 64278
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.538344143456696e-5
allele num: 10484
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 1.912e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.401e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

DP
type: SiteQuality
SIO_000300: 1.598262e6

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
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variant carriers: 0

GenotypeDepth
all individuals: 78
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variant carriers: 0

GenotypeDepth
all individuals: 363
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variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38328
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
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variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.036054703688355e-4
allele num: 9652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10522
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.246e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

FS
type: SiteQuality
SIO_000300: 1.969e0

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

DP
type: SiteQuality
SIO_000300: 1.599968e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.667e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 16

GenotypeDepth
all individuals: 57
bin: 8.75e1
variant carriers: 20

GenotypeDepth
all individuals: 230
bin: 9.75e1
variant carriers: 157

GenotypeDepth
all individuals: 244
bin: 1.75e1
variant carriers: 4

GenotypeDepth
all individuals: 113
bin: 7.25e1
variant carriers: 27

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
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variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 1

GenotypeQuality
all individuals: 7384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 1

GenotypeQuality
all individuals: 1074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
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variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38674
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2590
bin: 9.75e1
variant carriers: 432

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.657083423887733e-5
allele num: 64418
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.838911364472232e-4
allele num: 10876
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.39178844815588e-3
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 419
allele frequency: 4.33927091963546e-2
allele num: 9656
num of homozygotes: 10

Other
type: Population
allele count: 1
allele frequency: 1.246882793017456e-3
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

FS
type: SiteQuality
SIO_000300: 6.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

QD
type: SiteQuality
SIO_000300: 1.512e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.619215e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

GenotypeDepth
all individuals: 59
bin: 8.25e1
variant carriers: 42

GenotypeDepth
all individuals: 136
bin: 6.25e1
variant carriers: 34

GenotypeDepth
all individuals: 38
bin: 9.25e1
variant carriers: 32

GenotypeDepth
all individuals: 735
bin: 4.25e1
variant carriers: 27

GenotypeDepth
all individuals: 359
bin: 9.75e1
variant carriers: 336

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7416
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1062
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2366
bin: 9.75e1
variant carriers: 845

GenotypeQuality
all individuals: 2095
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 39001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 8.532687951844612e-4
allele num: 64458
num of homozygotes: 0

African
type: Population
allele count: 728
allele frequency: 7.528438469493279e-2
allele num: 9670
num of homozygotes: 21

Other
type: Population
allele count: 11
allele frequency: 1.364764267990074e-2
allele num: 806
num of homozygotes: 1

Latino
type: Population
allele count: 75
allele frequency: 6.521739130434782e-3
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.824484583105273e-4
allele num: 10962
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.92e-2

DP
type: SiteQuality
SIO_000300: 1.623685e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.576e0

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeDepth
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9632
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1666
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7416
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551397809426293e-5
allele num: 64458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.92e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.576e0

DP
type: SiteQuality
SIO_000300: 1.623685e6

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

QD
type: SiteQuality
SIO_000300: 1.346e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeDepth
all individuals: 1663
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
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variant carriers: 0

GenotypeQuality
all individuals: 40010
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7556
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.75e1
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GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 2.444987775061125e-3
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.628127696289905e-5
allele num: 11590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.172e0

QD
type: SiteQuality
SIO_000300: 1.492e1

FS
type: SiteQuality
SIO_000300: 2.017e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

DP
type: SiteQuality
SIO_000300: 1.582348e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

GenotypeDepth
all individuals: 23
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 29610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
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GenotypeQuality
all individuals: 1072
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 2120
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variant carriers: 0

GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 436
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GenotypeQuality
all individuals: 3084
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GenotypeQuality
all individuals: 40217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 7566
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variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 2137
bin: 7.25e1
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GenotypeQuality
all individuals: 430
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GenotypeQuality
all individuals: 200
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GenotypeQuality
all individuals: 1567
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544783266907653e-5
allele num: 64734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11840
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.577e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

DP
type: SiteQuality
SIO_000300: 1.58539e6

QD
type: SiteQuality
SIO_000300: 1.24e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

GenotypeDepth
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 720
bin: 4.25e1
variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.005677610466552e-4
allele num: 64816
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 3
allele frequency: 2.488800398208064e-4
allele num: 12054
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European (Finnish)
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allele frequency: 0.0e0
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MQ
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 11544
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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African
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Other
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ClippingRankSum
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DP
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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East Asian
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Latino
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African
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European (Non-Finnish)
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Other
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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Other
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European (Non-Finnish)
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allele num: 65640
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South Asian
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DP
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MQ
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ClippingRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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Latino
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African
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European (Non-Finnish)
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South Asian
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Other
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FS
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MQ
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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Latino
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South Asian
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MQ
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.513821187441339e-5
allele num: 66058
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15220
num of homozygotes: 0

African
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allele count: 10
allele frequency: 1.021867974657674e-3
allele num: 9786
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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SIO_000300: -2.25e-1

MQ
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SIO_000300: 5.955e1

ReadPosRankSum
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SIO_000300: 2.47e-1

ClippingRankSum
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SIO_000300: -6.0e-3

QD
type: SiteQuality
SIO_000300: 1.215e1

DP
type: SiteQuality
SIO_000300: 1.630117e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510254628930438e-5
allele num: 66214
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
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ReadPosRankSum
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SIO_000300: 6.67e-1

BaseQRankSum
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SIO_000300: 6.15e-1

FS
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.364e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
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allele frequency: 5.186721991701245e-4
allele num: 11568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

ReadPosRankSum
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DP
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SIO_000300: 1.647844e6

InbreedingCoeff
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FS
type: SiteQuality
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QD
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MQ
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SIO_000300: 5.976e1

MQRankSum
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SIO_000300: -9.1e-2

VQSLOD
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SIO_000300: 2.52e0

BaseQRankSum
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SIO_000300: 2.0e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023541453428864e-4
allele num: 9770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.83e-1

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 1.282e1

DP
type: SiteQuality
SIO_000300: 1.646319e6

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.594258042199931e-4
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.024170421958214e-4
allele num: 9764
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 19
allele frequency: 1.160517957488395e-3
allele num: 16372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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BaseQRankSum
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SIO_000300: 6.19e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.008423586040914e-5
allele num: 66480
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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Latino
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num of homozygotes: 0

South Asian
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ClippingRankSum
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DP
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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MQ
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FS
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MQRankSum
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VQSLOD
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 8.25e1
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GenotypeQuality
all individuals: 426
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
bin: 2.5e0
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GenotypeQuality
all individuals: 1505
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 43
bin: 4.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 2123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513721714010592e-5
allele num: 66464
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

FS
type: SiteQuality
SIO_000300: 2.066e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

DP
type: SiteQuality
SIO_000300: 1.642543e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 1.362e1

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
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GenotypeQuality
all individuals: 153
bin: 2.75e1
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
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GenotypeQuality
all individuals: 580
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variant carriers: 0

GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1058
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variant carriers: 0

GenotypeQuality
all individuals: 2135
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variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.055921052631579e-4
allele num: 9728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.636737e6

VQSLOD
type: SiteQuality
SIO_000300: 1.21e-1

FS
type: SiteQuality
SIO_000300: 1.366e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.046e1

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 207
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 1046
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GenotypeQuality
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GenotypeQuality
all individuals: 191
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GenotypeQuality
all individuals: 415
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GenotypeQuality
all individuals: 239
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 2099
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GenotypeQuality
all individuals: 791
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variant carriers: 0

GenotypeQuality
all individuals: 7561
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.11545988258317e-5
allele num: 16352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.143e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 5.322e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 1.629032e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 18
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
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variant carriers: 0

GenotypeQuality
all individuals: 415
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GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 2070
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 2099
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GenotypeQuality
all individuals: 791
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 43279
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variant carriers: 0

GenotypeQuality
all individuals: 191
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variant carriers: 0

GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 207
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variant carriers: 0

GenotypeQuality
all individuals: 7561
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.322e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 1.629032e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

VQSLOD
type: SiteQuality
SIO_000300: 9.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 34
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variant carriers: 0

GenotypeDepth
all individuals: 95
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variant carriers: 1

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 43479
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GenotypeQuality
all individuals: 810
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 2097
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GenotypeQuality
all individuals: 1492
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variant carriers: 4

GenotypeQuality
all individuals: 98
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 7573
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 365
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GenotypeQuality
all individuals: 2066
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variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
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GenotypeQuality
all individuals: 211
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GenotypeQuality
all individuals: 415
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GenotypeQuality
all individuals: 1048
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.092145949288807e-4
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.892e0

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
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SIO_000300: -6.899999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.62883e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 132
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GenotypeQuality
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GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.358777703967631e-4
allele num: 66236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.507e0

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

BaseQRankSum
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SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 415
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 20
bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 7544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030715316429602e-4
allele num: 9702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66200
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 4.49e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 1474
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7544
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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allele num: 66200
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Latino
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South Asian
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Other
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East Asian
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ClippingRankSum
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FS
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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South Asian
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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MQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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South Asian
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European (Non-Finnish)
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Other
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.2306177701206e-4
allele num: 16252
num of homozygotes: 0

Latino
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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FS
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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Other
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MQRankSum
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FS
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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FS
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ReadPosRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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Other
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European (Non-Finnish)
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allele num: 65892
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East Asian
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Latino
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele num: 9640
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Latino
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European (Non-Finnish)
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Other
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East Asian
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QD
type: SiteQuality
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FS
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519803033526855e-5
allele num: 65798
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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South Asian
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African
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allele num: 9628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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ReadPosRankSum
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SIO_000300: 1.33e0

BaseQRankSum
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DP
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QD
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FS
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 3.506311360448808e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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South Asian
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 1.0e-4

MQ
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.23e-1

QD
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SIO_000300: 1.524e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

East Asian
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Other
type: Population
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65614
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South Asian
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European (Finnish)
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MQRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

Other
type: Population
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East Asian
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Latino
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num of homozygotes: 0

South Asian
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African
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allele frequency: 2.301255230125523e-3
allele num: 9560
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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MQRankSum
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ReadPosRankSum
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