12-56093606-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093606
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093606
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 50318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+440C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.922+48C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.851+48C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.445+48C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.790+48C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-905C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.790+48C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.790+48C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+440C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+440C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.316+48C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.922+48C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11356
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/12-56093608-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093608
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093608
    reference: chr 12
allele count: 2
allele frequency: 3.980099502487562e-5
allele num: 50250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-907T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.445+46T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+438T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+438T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.851+46T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.790+46T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+438T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.922+46T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.316+46T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.790+46T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.922+46T>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.790+46T>G
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

12-56093612-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093612
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093612
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 50524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-911A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.922+42A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.922+42A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+434A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.790+42A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.445+42A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+434A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.790+42A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.316+42A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.790+42A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.851+42A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+434A>G
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23743
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-56093615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093615
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093615
    reference: chr 12
allele count: 2
allele frequency: 3.937007874015748e-5
allele num: 50800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-914C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.316+39C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.790+39C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.922+39C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.790+39C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.445+39C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.790+39C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+431C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.851+39C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.922+39C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+431C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+431C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-56093622-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093622
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093622
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 52050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.790+32G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.922+32G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-921G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+424G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.922+32G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.790+32G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+424G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.851+32G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.790+32G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.445+32G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+424G>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.316+32G>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24752
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

12-56093635-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093635
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093635
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 55532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.316+19C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.851+19C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.922+19C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.790+19C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.790+19C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.445+19C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.922+19C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.790+19C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+411C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-934C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+411C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+411C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26524
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-56093644-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093644
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093644
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 60410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.922+10C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.316+10C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.790+10C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-943C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.445+10C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.790+10C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+402C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.922+10C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+402C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.790+10C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.851+10C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+402C>G
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25948
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

12-56093645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093645
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093645
    reference: chr 12
allele count: 1
allele frequency: 1.645548790521639e-5
allele num: 60770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.790+9G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.922+9G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.445+9G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.922+9G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.790+9G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-944G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.851+9G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.790+9G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+401G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+401G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.316+9G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+401G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25916
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-56093661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093661
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093661
    reference: chr 12
allele count: 7
allele frequency: 1.003699349029279e-4
allele num: 69742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+385C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.783C>T
  hgvsp: ENST00000347027.6:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-960C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+385C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.783C>T
  hgvsp: ENST00000394229.2:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.915C>T
  hgvsp: ENST00000257880.7:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.309C>T
  hgvsp: ENST00000557257.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.438C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.783C>T
  hgvsp: ENST00000257879.6:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.915C>T
  hgvsp: ENST00000555728.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.844C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+385C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12818
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser261Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-56093664-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093664
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093664
    reference: chr 12
allele count: 7
allele frequency: 9.7103540117634e-5
allele num: 72088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+382T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.435T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.780T>C
  hgvsp: ENST00000257879.6:c.780T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.780T>C
  hgvsp: ENST00000394229.2:c.780T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.912T>C
  hgvsp: ENST00000257880.7:c.912T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.912T>C
  hgvsp: ENST00000555728.1:c.912T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+382T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-963T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.780T>C
  hgvsp: ENST00000347027.6:c.780T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.841T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.306T>C
  hgvsp: ENST00000557257.1:c.306T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+382T>C
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14319
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn260Asn
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-56093667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093667
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093667
    reference: chr 12
allele count: 18
allele frequency: 2.412868632707775e-4
allele num: 74600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.777C>T
  hgvsp: ENST00000394229.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-966C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+379C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.838C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.909C>T
  hgvsp: ENST00000555728.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.432C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+379C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.909C>T
  hgvsp: ENST00000257880.7:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.777C>T
  hgvsp: ENST00000347027.6:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+379C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.777C>T
  hgvsp: ENST00000257879.6:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.303C>T
  hgvsp: ENST00000557257.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15873
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu259Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

12-56093670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093670
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093670
    reference: chr 12
allele count: 7
allele frequency: 9.067357512953368e-5
allele num: 77200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.906C>T
  hgvsp: ENST00000257880.7:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.774C>T
  hgvsp: ENST00000257879.6:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+376C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.774C>T
  hgvsp: ENST00000347027.6:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.906C>T
  hgvsp: ENST00000555728.1:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.774C>T
  hgvsp: ENST00000394229.2:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+376C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.300C>T
  hgvsp: ENST00000557257.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.429C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.835C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-969C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+376C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16867
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala258Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

12-56093676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093676
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093676
    reference: chr 12
allele count: 1
allele frequency: 1.209219086314058e-5
allele num: 82698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-975C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+370C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+370C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.900C>T
  hgvsp: ENST00000555728.1:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.900C>T
  hgvsp: ENST00000257880.7:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.294C>T
  hgvsp: ENST00000557257.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.829C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.768C>T
  hgvsp: ENST00000394229.2:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.768C>T
  hgvsp: ENST00000257879.6:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.768C>T
  hgvsp: ENST00000347027.6:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.423C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+370C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp256Asp
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-56093681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093681
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093681
    reference: chr 12
allele count: 2
allele frequency: 2.305794461481703e-5
allele num: 86738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.895G>A
  hgvsp: ENSP00000452387.1:p.Gly299Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-980G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.763G>A
  hgvsp: ENSP00000343009.6:p.Gly255Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+365G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+365G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.763G>A
  hgvsp: ENSP00000257879.6:p.Gly255Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.824G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.289G>A
  hgvsp: ENSP00000450578.1:p.Gly97Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.763G>A
  hgvsp: ENSP00000377776.2:p.Gly255Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+365G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.895G>A
  hgvsp: ENSP00000257880.7:p.Gly299Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.418G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly255Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

12-56093682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093682
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093682
    reference: chr 12
allele count: 24
allele frequency: 2.698387713341279e-4
allele num: 88942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.894C>T
  hgvsp: ENST00000555728.1:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.823C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.762C>T
  hgvsp: ENST00000257879.6:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.762C>T
  hgvsp: ENST00000394229.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.417C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.762C>T
  hgvsp: ENST00000347027.6:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+364C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.894C>T
  hgvsp: ENST00000257880.7:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-981C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+364C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+364C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.288C>T
  hgvsp: ENST00000557257.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22404
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15575
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala254Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

12-56093682-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093682
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093682
    reference: chr 12
allele count: 1
allele frequency: 1.124328213892199e-5
allele num: 88942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-981C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.823C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+364C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.762C>G
  hgvsp: ENST00000347027.6:c.762C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.288C>G
  hgvsp: ENST00000557257.1:c.288C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+364C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.417C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.762C>G
  hgvsp: ENST00000394229.2:c.762C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.894C>G
  hgvsp: ENST00000257880.7:c.894C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.762C>G
  hgvsp: ENST00000257879.6:c.762C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.894C>G
  hgvsp: ENST00000555728.1:c.894C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+364C>G
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala254Ala
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

12-56093684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093684
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093684
    reference: chr 12
allele count: 1
allele frequency: 1.093804690234512e-5
allele num: 91424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+362G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.760G>A
  hgvsp: ENSP00000257879.6:p.Ala254Thr
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+362G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.415G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.892G>A
  hgvsp: ENSP00000257880.7:p.Ala298Thr
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.760G>A
  hgvsp: ENSP00000377776.2:p.Ala254Thr
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.892G>A
  hgvsp: ENSP00000452387.1:p.Ala298Thr
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+362G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.760G>A
  hgvsp: ENSP00000343009.6:p.Ala254Thr
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.286G>A
  hgvsp: ENSP00000450578.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.821G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-983G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala254Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

12-56093686-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093686
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093686
    reference: chr 12
allele count: 1
allele frequency: 1.066461905980718e-5
allele num: 93768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+360C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.413C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.758C>G
  hgvsp: ENSP00000377776.2:p.Pro253Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.890C>G
  hgvsp: ENSP00000452387.1:p.Pro297Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.758C>G
  hgvsp: ENSP00000257879.6:p.Pro253Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.819C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+360C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+360C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.284C>G
  hgvsp: ENSP00000450578.1:p.Pro95Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.758C>G
  hgvsp: ENSP00000343009.6:p.Pro253Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.890C>G
  hgvsp: ENSP00000257880.7:p.Pro297Arg
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-985C>G
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro253Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

12-56093691-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093691
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093691
    reference: chr 12
allele count: 1
allele frequency: 1.023625271260697e-5
allele num: 97692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.408A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-990A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.885A>G
  hgvsp: ENST00000257880.7:c.885A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+355A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.279A>G
  hgvsp: ENST00000557257.1:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.753A>G
  hgvsp: ENST00000347027.6:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.753A>G
  hgvsp: ENST00000257879.6:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.753A>G
  hgvsp: ENST00000394229.2:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+355A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.814A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.885A>G
  hgvsp: ENST00000555728.1:c.885A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+355A>G
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro251Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

12-56093693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093693
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093693
    reference: chr 12
allele count: 1
allele frequency: 1.003814495081309e-5
allele num: 99620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.812C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-992C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.883C>T
  hgvsp: ENSP00000257880.7:p.Pro295Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.883C>T
  hgvsp: ENSP00000452387.1:p.Pro295Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.751C>T
  hgvsp: ENSP00000343009.6:p.Pro251Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+353C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.751C>T
  hgvsp: ENSP00000377776.2:p.Pro251Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.751C>T
  hgvsp: ENSP00000257879.6:p.Pro251Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.406C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.277C>T
  hgvsp: ENSP00000450578.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+353C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+353C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro251Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

12-56093695-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093695
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093695
    reference: chr 12
allele count: 1
allele frequency: 9.894720177313386e-6
allele num: 101064
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.749T>C
  hgvsp: ENSP00000343009.6:p.Leu250Pro
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+351T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.881T>C
  hgvsp: ENSP00000257880.7:p.Leu294Pro
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.881T>C
  hgvsp: ENSP00000452387.1:p.Leu294Pro
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+351T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.275T>C
  hgvsp: ENSP00000450578.1:p.Leu92Pro
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.749T>C
  hgvsp: ENSP00000377776.2:p.Leu250Pro
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.749T>C
  hgvsp: ENSP00000257879.6:p.Leu250Pro
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+351T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.810T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-994T>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.404T>C
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu250Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

12-56093698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093698
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093698
    reference: chr 12
allele count: 1
allele frequency: 9.632983334938831e-6
allele num: 103810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.746G>A
  hgvsp: ENSP00000377776.2:p.Arg249Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+348G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+348G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.878G>A
  hgvsp: ENSP00000257880.7:p.Arg293Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.746G>A
  hgvsp: ENSP00000343009.6:p.Arg249Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.878G>A
  hgvsp: ENSP00000452387.1:p.Arg293Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.272G>A
  hgvsp: ENSP00000450578.1:p.Arg91Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.746G>A
  hgvsp: ENSP00000257879.6:p.Arg249Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.401G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.807G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+348G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-997G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg249Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

12-56093699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093699
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093699
    reference: chr 12
allele count: 3
allele frequency: 2.861721611721612e-5
allele num: 104832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.806C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.271C>T
  hgvsp: ENSP00000450578.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.400C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.745C>T
  hgvsp: ENSP00000257879.6:p.Arg249Trp
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.745C>T
  hgvsp: ENSP00000343009.6:p.Arg249Trp
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.745C>T
  hgvsp: ENSP00000377776.2:p.Arg249Trp
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+347C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+347C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.877C>T
  hgvsp: ENSP00000452387.1:p.Arg293Trp
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-998C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.877C>T
  hgvsp: ENSP00000257880.7:p.Arg293Trp
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+347C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29293
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg249Trp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

12-56093702-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093702
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093702
    reference: chr 12
allele count: 1
allele frequency: 9.262861483169381e-6
allele num: 107958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+344G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.803G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.874G>A
  hgvsp: ENSP00000257880.7:p.Asp292Asn
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+344G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+344G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1001G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.742G>A
  hgvsp: ENSP00000257879.6:p.Asp248Asn
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.742G>A
  hgvsp: ENSP00000343009.6:p.Asp248Asn
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.397G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.268G>A
  hgvsp: ENSP00000450578.1:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.742G>A
  hgvsp: ENSP00000377776.2:p.Asp248Asn
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.874G>A
  hgvsp: ENSP00000452387.1:p.Asp292Asn
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp248Asn
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

12-56093709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093709
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093709
    reference: chr 12
allele count: 1
allele frequency: 8.796776860958145e-6
allele num: 113678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.261C>T
  hgvsp: ENST00000557257.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.735C>T
  hgvsp: ENST00000347027.6:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.735C>T
  hgvsp: ENST00000257879.6:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.796C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.735C>T
  hgvsp: ENST00000394229.2:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.867C>T
  hgvsp: ENST00000257880.7:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+337C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.390C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+337C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1008C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+337C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.867C>T
  hgvsp: ENST00000555728.1:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp245Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

12-56093726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093726
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093726
    reference: chr 12
allele count: 1
allele frequency: 8.452228007302725e-6
allele num: 118312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.718G>A
  hgvsp: ENSP00000377776.2:p.Val240Met
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.718G>A
  hgvsp: ENSP00000343009.6:p.Val240Met
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.850G>A
  hgvsp: ENSP00000452387.1:p.Val284Met
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.850G>A
  hgvsp: ENSP00000257880.7:p.Val284Met
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.244G>A
  hgvsp: ENSP00000450578.1:p.Val82Met
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1025G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.718G>A
  hgvsp: ENSP00000257879.6:p.Val240Met
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+320G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.779G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+320G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+320G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.373G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val240Met
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

12-56093736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093736
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093736
    reference: chr 12
allele count: 8
allele frequency: 6.683375104427736e-5
allele num: 119700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.234C>T
  hgvsp: ENST00000557257.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+310C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1035C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.708C>T
  hgvsp: ENST00000257879.6:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.769C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.708C>T
  hgvsp: ENST00000347027.6:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+310C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.840C>T
  hgvsp: ENST00000257880.7:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.840C>T
  hgvsp: ENST00000555728.1:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.708C>T
  hgvsp: ENST00000394229.2:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.363C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+310C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10996
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro236Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

12-56093773-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093773
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093773
    reference: chr 12
allele count: 3
allele frequency: 2.492688114863068e-5
allele num: 120352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671G>C
  hgvsp: ENSP00000377776.2:p.Gly224Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671G>C
  hgvsp: ENSP00000257879.6:p.Gly224Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+273G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197G>C
  hgvsp: ENSP00000450578.1:p.Gly66Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.326G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803G>C
  hgvsp: ENSP00000257880.7:p.Gly268Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803G>C
  hgvsp: ENSP00000452387.1:p.Gly268Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+273G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+273G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671G>C
  hgvsp: ENSP00000343009.6:p.Gly224Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1072G>C
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly268Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

12-56093774-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093774
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093774
    reference: chr 12
allele count: 8
allele frequency: 6.646836936472856e-5
allele num: 120358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-1G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-1G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1073G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-1G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-1G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-1G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.325G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+272G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-1G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-1G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+272G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-1G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+272G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.732-1G>A
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

12-56093778-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093778
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093778
    reference: chr 12
allele count: 6
allele frequency: 4.986950812041824e-5
allele num: 120314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-5C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-5C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.321C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-5C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-5C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-5C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-5C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1077C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-5C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-5C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+268C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+268C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+268C>G
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.732-5C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

12-56093778-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093778
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093778
    reference: chr 12
allele count: 87
allele frequency: 7.231078677460644e-4
allele num: 120314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-5C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-5C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+268C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-5C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-5C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-5C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-5C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-5C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.321C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1077C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+268C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-5C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+268C>A
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 34411
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11528
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: n.732-5C>A
num of homozygotes: 3
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-56093781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093781
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093781
    reference: chr 12
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-8C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-8C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.318C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-8C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+265C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-8C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-8C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+265C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1080C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-8C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-8C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+265C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-8C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: n.732-8C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

12-56093782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093782
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093782
    reference: chr 12
allele count: 2
allele frequency: 1.662151156026129e-5
allele num: 120326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1081C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+264C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-9C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-9C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.317C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+264C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+264C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-9C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-9C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-9C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-9C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-9C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-9C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

12-56093786-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093786
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093786
    reference: chr 12
allele count: 1
allele frequency: 8.311446524153063e-6
allele num: 120316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-13C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-13C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-13C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-13C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-13C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-13C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-13C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+260C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+260C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.313C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+260C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1085C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-13C>G
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-56093787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093787
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093787
    reference: chr 12
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-14C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.312C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-14C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-14C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+259C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-14C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+259C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1086C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-14C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-14C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+259C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-14C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-14C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

12-56093806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093806
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093806
    reference: chr 12
allele count: 2
allele frequency: 1.665084836072398e-5
allele num: 120114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-33C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1105C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-33C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-33C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-33C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.293C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+240C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-33C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+240C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-33C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+240C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-33C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-33C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32723
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-56093816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093816
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093816
    reference: chr 12
allele count: 1
allele frequency: 8.334305668994715e-6
allele num: 119986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+230C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1115C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+230C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-43C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-43C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-43C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-43C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.283C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+230C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-43C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-43C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-43C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-43C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS

12-56093816-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093816
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093816
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 119986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+230C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-43C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-43C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-43C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-43C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-43C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-43C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+230C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.283C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-43C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1115C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+230C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-43C>A
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

12-56093817-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093817
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093817
    reference: chr 12
allele count: 2
allele frequency: 1.667222407469156e-5
allele num: 119960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-44A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+229A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-44A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.282A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-44A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1116A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-44A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-44A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-44A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+229A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-44A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-44A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+229A>G
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

12-56093817-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56093817
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56093817
    reference: chr 12
allele count: 81703
allele frequency: 6.810853617872624e-1
allele num: 119960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.282A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-44A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-44A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-44A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-44A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.803-44A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1116A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+229A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.803-44A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+229A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+229A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-44A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-44A>C
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 3.75e1
  variant carriers: 6454
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 4.75e1
  variant carriers: 4801
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.75e1
  variant carriers: 852
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 5.75e1
  variant carriers: 3125
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.25e1
  variant carriers: 1242
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 1666
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.75e1
  variant carriers: 2275
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 915
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.75e1
  variant carriers: 6257
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.25e1
  variant carriers: 5509
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 331
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 4035
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.25e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 8.25e1
  variant carriers: 594
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 448
genotype quality: GenotypeQuality
num of homozygotes: 28922
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

12-56094002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094002
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094002
    reference: chr 12
allele count: 1
allele frequency: 8.649172274213358e-6
allele num: 115618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-229C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-229C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-229C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-229C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+44C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+44C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+44C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.97C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1301C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-229C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+44C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+44C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-229C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13136
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-56094007-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094007
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094007
    reference: chr 12
allele count: 1
allele frequency: 8.633491038436302e-6
allele num: 115828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-234C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1306C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+39C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+39C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-234C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-234C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-234C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.92C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-234C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+39C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+39C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+39C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-234C>G
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

12-56094011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094011
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094011
    reference: chr 12
allele count: 1
allele frequency: 8.632000552448036e-6
allele num: 115848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.88C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-238C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+35C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-238C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+35C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1310C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+35C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-238C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+35C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-238C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-238C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-238C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+35C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

12-56094026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094026
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094026
    reference: chr 12
allele count: 1
allele frequency: 8.588999209812073e-6
allele num: 116428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.73C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+20C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-253C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-253C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-253C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1325C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-253C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+20C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-253C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+20C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+20C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-253C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+20C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

12-56094029-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094029
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094029
    reference: chr 12
allele count: 3
allele frequency: 2.576876825287751e-5
allele num: 116420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+17G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+17G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.70G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-256G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+17G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-256G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1328G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-256G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+17G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+17G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-256G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-256G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-256G>C
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10814
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14223
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-56094029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094029
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094029
    reference: chr 12
allele count: 5
allele frequency: 4.294794708812919e-5
allele num: 116420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1328G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-256G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-256G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-256G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+17G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-256G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+17G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+17G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-256G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.70G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-256G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+17G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+17G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-56094030-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094030
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094030
    reference: chr 12
allele count: 11
allele frequency: 9.427009238469053e-5
allele num: 116686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-257C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-257C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+16C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+16C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-257C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-257C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.69C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+16C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-257C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+16C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+16C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-257C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1329C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10905
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

12-56094033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094033
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094033
    reference: chr 12
allele count: 1
allele frequency: 8.547008547008548e-6
allele num: 117000
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+13C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-260C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-260C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1332C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-260C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.66C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-260C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-260C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+13C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+13C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+13C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+13C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-260C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

12-56094039-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094039
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094039
    reference: chr 12
allele count: 36
allele frequency: 3.131959910913141e-4
allele num: 114944
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+7A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-266A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1338A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+7A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+7A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-266A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+7A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+7A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-266A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-266A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.60A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-266A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-266A>C
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.802+7A>C
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

12-56094041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094041
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094041
    reference: chr 12
allele count: 1
allele frequency: 8.49314603115286e-6
allele num: 117742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-268G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.511+5G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-268G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1340G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-268G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.802+5G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-268G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.802+5G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.802+5G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.802+5G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.58G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-268G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-268G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.802+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

12-56094051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094051
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094051
    reference: chr 12
allele count: 1
allele frequency: 8.453799983092399e-6
allele num: 118290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.506A>G
  hgvsp: ENSP00000393844.2:p.Tyr169Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.797A>G
  hgvsp: ENSP00000452387.1:p.Tyr266Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.797A>G
  hgvsp: ENSP00000452120.1:p.Tyr266Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-278A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.48A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.797A>G
  hgvsp: ENSP00000377777.2:p.Tyr266Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-278A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.732-278A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.797A>G
  hgvsp: ENSP00000257880.7:p.Tyr266Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-278A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-278A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-278A>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1350A>G
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16124
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr266Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

12-56094064-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094064
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094064
    reference: chr 12
allele count: 1
allele frequency: 8.451085119329322e-6
allele num: 118328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.784C>G
  hgvsp: ENSP00000377777.2:p.Pro262Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-291C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1363C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.784C>G
  hgvsp: ENSP00000452387.1:p.Pro262Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-291C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.35C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.493C>G
  hgvsp: ENSP00000393844.2:p.Pro165Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.784C>G
  hgvsp: ENSP00000257880.7:p.Pro262Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-291C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-291C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+286C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-291C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.784C>G
  hgvsp: ENSP00000452120.1:p.Pro262Ala
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro262Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

12-56094068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094068
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094068
    reference: chr 12
allele count: 18
allele frequency: 1.525010166734445e-4
allele num: 118032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.780G>A
  hgvsp: ENST00000257880.7:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-295G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.780G>A
  hgvsp: ENST00000553804.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-295G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+282G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.780G>A
  hgvsp: ENST00000394230.2:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1367G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.31G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-295G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.489G>A
  hgvsp: ENST00000452168.2:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-295G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-295G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.780G>A
  hgvsp: ENST00000555728.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15780
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro260Pro
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

12-56094069-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094069
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094069
    reference: chr 12
allele count: 1
allele frequency: 8.468691248454463e-6
allele num: 118082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.30C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-296C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.488C>A
  hgvsp: ENSP00000393844.2:p.Pro163Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-296C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-296C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-296C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.779C>A
  hgvsp: ENSP00000257880.7:p.Pro260Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.779C>A
  hgvsp: ENSP00000452120.1:p.Pro260Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1368C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.779C>A
  hgvsp: ENSP00000377777.2:p.Pro260Gln
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-296C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+281C>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.779C>A
  hgvsp: ENSP00000452387.1:p.Pro260Gln
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro260Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

12-56094070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094070
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094070
    reference: chr 12
allele count: 2
allele frequency: 1.692333728211203e-5
allele num: 118180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+280C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-297C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.487C>T
  hgvsp: ENSP00000393844.2:p.Pro163Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-297C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-297C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-297C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.778C>T
  hgvsp: ENSP00000257880.7:p.Pro260Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-297C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.778C>T
  hgvsp: ENSP00000452387.1:p.Pro260Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1369C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.778C>T
  hgvsp: ENSP00000452120.1:p.Pro260Ser
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.29C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.778C>T
  hgvsp: ENSP00000377777.2:p.Pro260Ser
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15958
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11751
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro260Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

12-56094071-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094071
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094071
    reference: chr 12
allele count: 2
allele frequency: 1.692018747567723e-5
allele num: 118202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.777C>T
  hgvsp: ENST00000257880.7:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-298C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.777C>T
  hgvsp: ENST00000553804.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+279C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-298C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.486C>T
  hgvsp: ENST00000452168.2:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1370C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.28C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.777C>T
  hgvsp: ENST00000555728.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-298C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.777C>T
  hgvsp: ENST00000394230.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-298C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-298C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11747
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile259Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

12-56094074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094074
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094074
    reference: chr 12
allele count: 1
allele frequency: 8.47443263673497e-6
allele num: 118002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.774C>T
  hgvsp: ENST00000555728.1:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.774C>T
  hgvsp: ENST00000257880.7:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-301C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.774C>T
  hgvsp: ENST00000394230.2:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-301C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+276C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.774C>T
  hgvsp: ENST00000553804.1:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1373C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.483C>T
  hgvsp: ENST00000452168.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-301C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.25C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-301C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-301C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15595
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu258Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

12-56094076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094076
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094076
    reference: chr 12
allele count: 5
allele frequency: 4.237647258242224e-5
allele num: 117990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-303C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.772C>T
  hgvsp: ENSP00000452387.1:p.Leu258Phe
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.772C>T
  hgvsp: ENSP00000257880.7:p.Leu258Phe
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1375C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.481C>T
  hgvsp: ENSP00000393844.2:p.Leu161Phe
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.23C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-303C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-303C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.772C>T
  hgvsp: ENSP00000377777.2:p.Leu258Phe
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-303C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.772C>T
  hgvsp: ENSP00000452120.1:p.Leu258Phe
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-303C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+274C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12724
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15612
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu258Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

12-56094079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094079
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094079
    reference: chr 12
allele count: 1
allele frequency: 8.481044864727334e-6
allele num: 117910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1378C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.769C>T
  hgvsp: ENSP00000452120.1:p.Arg257Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-306C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.20C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-306C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-306C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.769C>T
  hgvsp: ENSP00000257880.7:p.Arg257Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+271C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.769C>T
  hgvsp: ENSP00000452387.1:p.Arg257Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.478C>T
  hgvsp: ENSP00000393844.2:p.Arg160Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-306C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.769C>T
  hgvsp: ENSP00000377777.2:p.Arg257Cys
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-306C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg257Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

12-56094082-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094082
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094082
    reference: chr 12
allele count: 2
allele frequency: 1.694082569584441e-5
allele num: 118058
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.766C>G
  hgvsp: ENSP00000257880.7:p.Pro256Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.766C>G
  hgvsp: ENSP00000452120.1:p.Pro256Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+268C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.475C>G
  hgvsp: ENSP00000393844.2:p.Pro159Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-309C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-309C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.766C>G
  hgvsp: ENSP00000452387.1:p.Pro256Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-309C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-309C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.766C>G
  hgvsp: ENSP00000377777.2:p.Pro256Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.17C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-309C>G
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1381C>G
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15620
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro256Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-56094084-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094084
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094084
    reference: chr 12
allele count: 180
allele frequency: 1.693416373454757e-3
allele num: 106294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1383A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.764A>C
  hgvsp: ENSP00000452387.1:p.Asp255Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000554543
  gene symbol: ITGA7
  hgvsc: ENST00000554543.1:n.15A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-311A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-311A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-311A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.473A>C
  hgvsp: ENSP00000393844.2:p.Asp158Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.764A>C
  hgvsp: ENSP00000377777.2:p.Asp255Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+266A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.764A>C
  hgvsp: ENSP00000452120.1:p.Asp255Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-311A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-311A>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.764A>C
  hgvsp: ENSP00000257880.7:p.Asp255Ala
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14423
  bin: 2.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 11033
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp255Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

12-56094098-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094098
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094099
    reference: chr 12
allele count: 1
allele frequency: 8.486082824168364e-6
allele num: 117840
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.749dupG
  hgvsp: ENSP00000377777.2:p.Glu251ArgfsTer22
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.749dupG
  hgvsp: ENSP00000452120.1:p.Glu251ArgfsTer22
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+251dupG
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.749dupG
  hgvsp: ENSP00000452387.1:p.Glu251ArgfsTer26
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.458dupG
  hgvsp: ENSP00000393844.2:p.Glu154ArgfsTer22
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-326dupG
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.749dupG
  hgvsp: ENSP00000257880.7:p.Glu251ArgfsTer26
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-326dupG
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-326dupG
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-326dupG
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-326dupG
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1398dupG
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11708
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu251ArgfsTer22
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

12-56094101-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094101
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094101
    reference: chr 12
allele count: 12
allele frequency: 1.014867813467296e-4
allele num: 118242
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.747G>A
  hgvsp: ENST00000553804.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.456G>A
  hgvsp: ENST00000452168.2:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-328G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.747G>A
  hgvsp: ENST00000257880.7:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-328G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-328G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.747G>A
  hgvsp: ENST00000555728.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+249G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-328G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.747G>A
  hgvsp: ENST00000394230.2:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-328G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1400G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12324
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly249Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

12-56094102-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094102
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094102
    reference: chr 12
allele count: 1
allele frequency: 8.45508658008658e-6
allele num: 118272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+248G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-329G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.746G>C
  hgvsp: ENSP00000257880.7:p.Gly249Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-329G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.455G>C
  hgvsp: ENSP00000393844.2:p.Gly152Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.746G>C
  hgvsp: ENSP00000452387.1:p.Gly249Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.746G>C
  hgvsp: ENSP00000452120.1:p.Gly249Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-329G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.746G>C
  hgvsp: ENSP00000377777.2:p.Gly249Ala
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-329G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1401G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-329G>C
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly249Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ

12-56094104-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094104
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094104
    reference: chr 12
allele count: 1
allele frequency: 8.453228287883143e-6
allele num: 118298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1403G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.744G>C
  hgvsp: ENST00000257880.7:c.744G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.744G>C
  hgvsp: ENST00000553804.1:c.744G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-331G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.744G>C
  hgvsp: ENST00000394230.2:c.744G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.744G>C
  hgvsp: ENST00000555728.1:c.744G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-331G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-331G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-331G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.453G>C
  hgvsp: ENST00000452168.2:c.453G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+246G>C
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-331G>C
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala248Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

12-56094104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094104
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094104
    reference: chr 12
allele count: 1
allele frequency: 8.453228287883143e-6
allele num: 118298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-331G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.453G>A
  hgvsp: ENST00000452168.2:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-331G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.744G>A
  hgvsp: ENST00000394230.2:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.744G>A
  hgvsp: ENST00000257880.7:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-331G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+246G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-331G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.744G>A
  hgvsp: ENST00000555728.1:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.744G>A
  hgvsp: ENST00000553804.1:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-331G>A
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1403G>A
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12420
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala248Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

12-56094105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56094105
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56094105
    reference: chr 12
allele count: 2
allele frequency: 1.691160305085319e-5
allele num: 118262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257879
  ensembl transcript: ENST00000257879
  gene symbol: ITGA7
  hgvsc: ENST00000257879.6:c.671-332C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl transcript: ENST00000553276
  gene symbol: ITGA7
  hgvsc: ENST00000553276.1:n.731+245C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000257880
  ensembl transcript: ENST00000257880
  gene symbol: ITGA7
  hgvsc: ENST00000257880.7:c.743C>T
  hgvsp: ENSP00000257880.7:p.Ala248Val
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452120
  ensembl transcript: ENST00000553804
  gene symbol: ITGA7
  hgvsc: ENST00000553804.1:c.743C>T
  hgvsp: ENSP00000452120.1:p.Ala248Val
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000451311
  ensembl transcript: ENST00000555687
  gene symbol: ITGA7
  hgvsc: ENST00000555687.1:c.*382-332C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000393844
  ensembl transcript: ENST00000452168
  gene symbol: ITGA7
  hgvsc: ENST00000452168.2:c.452C>T
  hgvsp: ENSP00000393844.2:p.Ala151Val
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000343009
  ensembl transcript: ENST00000347027
  gene symbol: ITGA7
  hgvsc: ENST00000347027.6:c.671-332C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377777
  ensembl transcript: ENST00000394230
  gene symbol: ITGA7
  hgvsc: ENST00000394230.2:c.743C>T
  hgvsp: ENSP00000377777.2:p.Ala248Val
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450679
  ensembl transcript: ENST00000556273
  gene symbol: ITGA7
  hgvsc: ENST00000556273.1:c.65-1404C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000452387
  ensembl transcript: ENST00000555728
  gene symbol: ITGA7
  hgvsc: ENST00000555728.1:c.743C>T
  hgvsp: ENSP00000452387.1:p.Ala248Val
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000377776
  ensembl transcript: ENST00000394229
  gene symbol: ITGA7
  hgvsc: ENST00000394229.2:c.671-332C>T
  variant of: http://identifiers.org/hgnc/6143
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135424
  ensembl protein: ENSP00000450578
  ensembl transcript: ENST00000557257
  gene symbol: ITGA7
  hgvsc: ENST00000557257.1:c.197-332C>T
  variant of: http://identifiers.org/hgnc/6143
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala248Val
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3934
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4999
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4817
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8102
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 465
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6980
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4663
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14765
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.94074e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.85e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

QD
type: SiteQuality
SIO_000300: 1.066e1

GenotypeDepth
all individuals: 1451
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4629
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15338
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6429
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5000
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 770
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.534034311012728e-4
allele num: 3614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.995e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

DP
type: SiteQuality
SIO_000300: 8.96222e5

GenotypeDepth
all individuals: 627
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8331
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4360
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4449
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3946
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 634
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4616
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4997
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

QD
type: SiteQuality
SIO_000300: 1.414e1

MQ
type: SiteQuality
SIO_000300: 5.763e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 9.03682e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: -2.617e0

GenotypeDepth
all individuals: 175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8258
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4045
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18593
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4997
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.992428770671449e-4
allele num: 10038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1702
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 9.09145e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.222e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.253e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

GenotypeDepth
all individuals: 642
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7714
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3977
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21028
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4997
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4584
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 9.29465e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.876e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

GenotypeDepth
all individuals: 625
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6144
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5461
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3947
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4999
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.253e1

DP
type: SiteQuality
SIO_000300: 9.84118e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.734e1

FS
type: SiteQuality
SIO_000300: 7.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.733e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeDepth
all individuals: 7598
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5002
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3885
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25094
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

QD
type: SiteQuality
SIO_000300: 1.151e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.036179e6

GenotypeDepth
all individuals: 625
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3676
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5003
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10788
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.64257555847569e-4
allele num: 6088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34130
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 2.808e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

DP
type: SiteQuality
SIO_000300: 1.041899e6

QD
type: SiteQuality
SIO_000300: 1.362e1

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1179
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5019
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12264
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.5001500150015e-4
allele num: 6666
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3514
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.01667344448963e-3
allele num: 4918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 2.597e0

QD
type: SiteQuality
SIO_000300: 1.201e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.435e0

DP
type: SiteQuality
SIO_000300: 1.144414e6

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

GenotypeDepth
all individuals: 175
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1081
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 642
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5020
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23115
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 841
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.688944650871013e-4
allele num: 41446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

FS
type: SiteQuality
SIO_000300: 7.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

DP
type: SiteQuality
SIO_000300: 1.171334e6

GenotypeDepth
all individuals: 1334
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1184
bin: 4.25e1
variant carriers: 6

GenotypeDepth
all individuals: 272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2758
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5035
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 457
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43080
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 3.507404520654716e-3
allele num: 5132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

DP
type: SiteQuality
SIO_000300: 1.19822e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.308e0

QD
type: SiteQuality
SIO_000300: 1.12e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 1.592e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2000
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4189
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2628
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21346
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5034
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 657
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.331811263318113e-3
allele num: 5256
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.493e0

VQSLOD
type: SiteQuality
SIO_000300: -1.553e-1

FS
type: SiteQuality
SIO_000300: 9.092000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

DP
type: SiteQuality
SIO_000300: 1.221134e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

GenotypeDepth
all individuals: 1369
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 642
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5053
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.774937877174299e-4
allele num: 5634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47764
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.74e0

FS
type: SiteQuality
SIO_000300: 2.049e0

DP
type: SiteQuality
SIO_000300: 1.27427e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.105e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

GenotypeDepth
all individuals: 5380
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 895
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 625
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5067
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.996483094876509e-5
allele num: 50044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.322e-1

DP
type: SiteQuality
SIO_000300: 1.320264e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

FS
type: SiteQuality
SIO_000300: 2.748e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQ
type: SiteQuality
SIO_000300: 5.88e1

GenotypeDepth
all individuals: 2718
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 1088
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3480
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22155
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5094
bin: 9.75e1
variant carriers: 23

African
type: Population
allele count: 1
allele frequency: 1.265502404454569e-4
allele num: 7902
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 8.616637944540184e-4
allele num: 12766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.341828968424339e-4
allele num: 51242
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.309e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 1.340069e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1209
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22155
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5094
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.649620587264929e-4
allele num: 6062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 1.340069e6

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23594
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5085
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.70891150169596e-5
allele num: 12972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.017e0

VQSLOD
type: SiteQuality
SIO_000300: -7.262999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e0

DP
type: SiteQuality
SIO_000300: 1.363263e6

GenotypeDepth
all individuals: 175
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1220
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5094
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 595
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.219809709685289e-4
allele num: 8198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 3.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.385511e6

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 624
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4063
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5110
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12171
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.471886959081543e-4
allele num: 6794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13488
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.814e-1

FS
type: SiteQuality
SIO_000300: 2.527e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.111e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 1.425709e6

QD
type: SiteQuality
SIO_000300: 1.053e1

MQ
type: SiteQuality
SIO_000300: 5.896e1

GenotypeDepth
all individuals: 1230
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10556
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 672
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11311
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.759695924544239e-5
allele num: 56828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6956
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.444494e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

FS
type: SiteQuality
SIO_000300: 9.269e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.412e-1

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1090
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10592
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28053
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5128
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.737136504186499e-5
allele num: 57566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.255e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 1.459015e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1251
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5156
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9156
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.697677577074562e-5
allele num: 58904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.372e0

DP
type: SiteQuality
SIO_000300: 1.491254e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1417
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5164
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.417635384179189e-4
allele num: 14108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683955274147919e-5
allele num: 59384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.504676e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 644
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7061
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5194
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31317
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.64257555847569e-5
allele num: 60880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14424
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.636e0

DP
type: SiteQuality
SIO_000300: 1.536215e6

QD
type: SiteQuality
SIO_000300: 1.522e1

GenotypeDepth
all individuals: 272
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 623
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5617
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5240
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 963
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.224889759921607e-4
allele num: 8164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.139e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.812e0

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e0

FS
type: SiteQuality
SIO_000300: 9.031000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.97e0

DP
type: SiteQuality
SIO_000300: 1.59797e6

GenotypeDepth
all individuals: 1326
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 449
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5267
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526065193505067e-5
allele num: 65528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.653316e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.474e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeDepth
all individuals: 176
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 623
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5279
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38030
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.538440591812653e-5
allele num: 66102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.215040397762585e-5
allele num: 16090
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.940023520188161e-4
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.770391159445712e-5
allele num: 11402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.137e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.189e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

DP
type: SiteQuality
SIO_000300: 1.672851e6

GenotypeDepth
all individuals: 644
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1753
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1313
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34718
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.611420612813371e-4
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.304e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

FS
type: SiteQuality
SIO_000300: 2.668e0

QD
type: SiteQuality
SIO_000300: 1.695e1

DP
type: SiteQuality
SIO_000300: 1.675572e6

GenotypeDepth
all individuals: 34671
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 622
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 902
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 873
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37387
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.890573419733463e-4
allele num: 16358
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 1.245e0

DP
type: SiteQuality
SIO_000300: 1.675176e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.86e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.114e0

VQSLOD
type: SiteQuality
SIO_000300: -4.115e-1

QD
type: SiteQuality
SIO_000300: 1.653e1

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

GenotypeDepth
all individuals: 1760
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1331
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 91
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37100
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5362
bin: 9.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.05698214722426e-4
allele num: 16356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.55e-2

DP
type: SiteQuality
SIO_000300: 1.676909e6

FS
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

QD
type: SiteQuality
SIO_000300: 1.273e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeDepth
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 647
bin: 5.75e1
variant carriers: 3

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 4

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 2

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 3

GenotypeDepth
all individuals: 277
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2365
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37100
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5362
bin: 9.75e1
variant carriers: 84

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741250217656277e-4
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 83
allele frequency: 8.188634569850039e-3
allele num: 10136
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507613447911955e-5
allele num: 66330
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.676909e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

GenotypeDepth
all individuals: 1750
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11567
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 644
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 620
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5330
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 850
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506977304921788e-5
allele num: 66358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.965e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

QD
type: SiteQuality
SIO_000300: 1.682e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.926e1

FS
type: SiteQuality
SIO_000300: 3.413e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

DP
type: SiteQuality
SIO_000300: 1.67481e6

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1117
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 741
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5329
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014772384684956e-5
allele num: 66340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.579e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

FS
type: SiteQuality
SIO_000300: 1.137e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.584e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.674233e6

GenotypeDepth
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 620
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6434
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5341
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 876
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.889240506329114e-5
allele num: 10112
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.002e1

FS
type: SiteQuality
SIO_000300: 5.141e0

DP
type: SiteQuality
SIO_000300: 1.674136e6

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

GenotypeDepth
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1322
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6434
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5342
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 345
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36997
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

QD
type: SiteQuality
SIO_000300: 5.72e0

FS
type: SiteQuality
SIO_000300: 5.756e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.262e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

DP
type: SiteQuality
SIO_000300: 1.673817e6

GenotypeDepth
all individuals: 457
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1786
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5092
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5358
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 871
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 949
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.878e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

QD
type: SiteQuality
SIO_000300: 1.549e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 6.63e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.663256e6

MQRankSum
type: SiteQuality
SIO_000300: -4.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

GenotypeDepth
all individuals: 1830
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1335
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1023
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1745
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5368
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31437
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509160604871571e-5
allele num: 66262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.28e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.667821e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.856e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 4.425e0

GenotypeDepth
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 651
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 274
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31437
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5368
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1745
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.856e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 4.425e0

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 1.667821e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

GenotypeDepth
all individuals: 298
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1683
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1257
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42999
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4809
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512767759893501e-5
allele num: 66104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.462351e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

FS
type: SiteQuality
SIO_000300: 6.79e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

QD
type: SiteQuality
SIO_000300: 2.636e1

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

GenotypeDepth
all individuals: 1107
bin: 9.75e1
variant carriers: 1057

GenotypeDepth
all individuals: 8141
bin: 2.25e1
variant carriers: 4320

GenotypeDepth
all individuals: 2330
bin: 6.25e1
variant carriers: 2298

GenotypeDepth
all individuals: 7505
bin: 3.25e1
variant carriers: 6766

GenotypeQuality
all individuals: 209
bin: 2.75e1
variant carriers: 120

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 447

GenotypeQuality
all individuals: 823
bin: 5.25e1
variant carriers: 682

GenotypeQuality
all individuals: 942
bin: 7.25e1
variant carriers: 668

GenotypeQuality
all individuals: 1769
bin: 8.25e1
variant carriers: 1522

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 322

GenotypeQuality
all individuals: 266
bin: 2.25e1
variant carriers: 152

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 25

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 40

GenotypeQuality
all individuals: 4809
bin: 6.25e1
variant carriers: 871

GenotypeQuality
all individuals: 149
bin: 1.75e1
variant carriers: 104

GenotypeQuality
all individuals: 388
bin: 3.25e1
variant carriers: 246

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 239

GenotypeQuality
all individuals: 1879
bin: 6.75e1
variant carriers: 1119

GenotypeQuality
all individuals: 896
bin: 8.75e1
variant carriers: 799

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 64

GenotypeQuality
all individuals: 42999
bin: 9.75e1
variant carriers: 42548

GenotypeQuality
all individuals: 657
bin: 4.75e1
variant carriers: 494

GenotypeQuality
all individuals: 1584
bin: 9.25e1
variant carriers: 1459

GenotypeQuality
all individuals: 1699
bin: 7.75e1
variant carriers: 1352

South Asian
type: Population
allele count: 12461
allele frequency: 7.583373904576436e-1
allele num: 16432
num of homozygotes: 4752

East Asian
type: Population
allele count: 8107
allele frequency: 9.486309384507372e-1
allele num: 8546
num of homozygotes: 3849

Latino
type: Population
allele count: 9141
allele frequency: 7.990384615384616e-1
allele num: 11440
num of homozygotes: 3698

African
type: Population
allele count: 9156
allele frequency: 9.134078212290503e-1
allele num: 10024
num of homozygotes: 4191

European (Non-Finnish)
type: Population
allele count: 37826
allele frequency: 5.722195328573157e-1
allele num: 66104
num of homozygotes: 10732

Other
type: Population
allele count: 606
allele frequency: 6.748329621380846e-1
allele num: 898
num of homozygotes: 209

European (Finnish)
type: Population
allele count: 4406
allele frequency: 6.761817065684469e-1
allele num: 6516
num of homozygotes: 1491

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 6.79e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 2.462351e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

QD
type: SiteQuality
SIO_000300: 2.636e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.67e-2

GenotypeDepth
all individuals: 63
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3510
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6185
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 462
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4692
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545690614566588e-5
allele num: 64696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 4.008e0

DP
type: SiteQuality
SIO_000300: 1.665794e6

VQSLOD
type: SiteQuality
SIO_000300: -2.576e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.468e0

MQ
type: SiteQuality
SIO_000300: 5.849e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.38e-1

QD
type: SiteQuality
SIO_000300: 5.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeDepth
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1681
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1912
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.060152499293985e-5
allele num: 14164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 7.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.855e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

DP
type: SiteQuality
SIO_000300: 1.674662e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 36
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 462
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4691
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4228
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8244
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3468
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5770
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.052188552188552e-4
allele num: 9504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14180
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.296e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 1.376e0

VQSLOD
type: SiteQuality
SIO_000300: -1.724e0

DP
type: SiteQuality
SIO_000300: 1.680435e6

MQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

GenotypeDepth
all individuals: 48
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 865
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2775
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 538
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3495
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540974512281567e-5
allele num: 64894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.225e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.211e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

DP
type: SiteQuality
SIO_000300: 1.70456e6

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeDepth
all individuals: 1688
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 239
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 523
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4746
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.625774817281895e-5
allele num: 64854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

FS
type: SiteQuality
SIO_000300: 1.775e0

QD
type: SiteQuality
SIO_000300: 1.006e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

DP
type: SiteQuality
SIO_000300: 1.711667e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeDepth
all individuals: 177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1688
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 239
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 867
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4746
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 2
allele frequency: 1.751927119831815e-4
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.08384987818793e-5
allele num: 64854
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 1.775e0

DP
type: SiteQuality
SIO_000300: 1.711667e6

MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
SIO_000300: 1.006e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeDepth
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 461
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 36
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4761
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5770
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 529
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20225
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3497
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.054852320675106e-4
allele num: 9480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.540879534038029e-4
allele num: 64898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

FS
type: SiteQuality
SIO_000300: 1.892e0

DP
type: SiteQuality
SIO_000300: 1.716637e6

QD
type: SiteQuality
SIO_000300: 1.156e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

GenotypeDepth
all individuals: 63
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4819
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538698261270965e-5
allele num: 64990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 3.831e0

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.367e0

QD
type: SiteQuality
SIO_000300: 1.662e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -2.641e0

DP
type: SiteQuality
SIO_000300: 1.720904e6

MQ
type: SiteQuality
SIO_000300: 5.799e1

GenotypeDepth
all individuals: 1736
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3614
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 47
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11312
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 608
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1385
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1047
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1510
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7966
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1154
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 371
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2376
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4392
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1247
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2093
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1841
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3262
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4128
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 17866
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1292
bin: 4.75e1
variant carriers: 3

South Asian
type: Population
allele count: 13
allele frequency: 8.89801505817933e-4
allele num: 14610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.852691218130312e-5
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.196172248803828e-3
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.303851947493007e-4
allele num: 9294
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.718093890068412e-4
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.03125e-4
allele num: 64000
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.43e1

FS
type: SiteQuality
SIO_000300: 1.25567e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.051e0

DP
type: SiteQuality
SIO_000300: 1.740586e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.564e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeDepth
all individuals: 450
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15761
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 873
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3620
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535343609899896e-5
allele num: 65132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15662
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.326e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.211e0

DP
type: SiteQuality
SIO_000300: 1.748419e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeDepth
all individuals: 14117
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3563
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5004
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4758
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5732
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.230529595015576e-5
allele num: 16050
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.761425e6

QD
type: SiteQuality
SIO_000300: 1.399e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeDepth
all individuals: 225
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15901
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6543
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4768
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5050
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5741
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533272002453235e-5
allele num: 65220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.758068e6

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.541e1

GenotypeDepth
all individuals: 11815
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 848
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13073
bin: 2.25e1
variant carriers: 5

GenotypeDepth
all individuals: 3589
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4657
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5749
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 18411
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.615810690217558e-5
allele num: 64994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.631319358816276e-4
allele num: 16220
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.06224771616741e-4
allele num: 9414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.358e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.69e-1

DP
type: SiteQuality
SIO_000300: 1.754859e6

GenotypeDepth
all individuals: 6540
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1709
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4993
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4673
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8958
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 926
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65014
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.603e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.121e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 1.754573e6

MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.031e0

FS
type: SiteQuality
SIO_000300: 1.7964e1

GenotypeDepth
all individuals: 6530
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1712
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19947
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5740
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3672
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.072479798445325e-5
allele num: 65094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7342e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 2.634e1

DP
type: SiteQuality
SIO_000300: 1.754715e6

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.095e0

GenotypeDepth
all individuals: 861
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16012
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3581
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5741
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.060220525869381e-4
allele num: 9432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536192700012289e-5
allele num: 65096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.44e-1

FS
type: SiteQuality
SIO_000300: 1.2331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.209e0

VQSLOD
type: SiteQuality
SIO_000300: -2.494e0

DP
type: SiteQuality
SIO_000300: 1.755188e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

GenotypeDepth
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1721
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5731
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2234
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64936
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.152073732718894e-3
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 1.752232e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

QD
type: SiteQuality
SIO_000300: 2.725e1

FS
type: SiteQuality
SIO_000300: 1.203e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

GenotypeDepth
all individuals: 2336
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 449
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2839
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 853
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5735
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1537
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.701075070079783e-5
allele num: 64926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.751459e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.543e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.373e1

GenotypeDepth
all individuals: 919
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1719
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15582
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.762705923589205e-5
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
SIO_000300: 1.316e1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.037e0

DP
type: SiteQuality
SIO_000300: 1.75236e6

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeDepth
all individuals: 11733
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6583
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4687
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5750
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1062
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5022
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.079671091127467e-5
allele num: 64942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.312e0

QD
type: SiteQuality
SIO_000300: 1.19e1

DP
type: SiteQuality
SIO_000300: 1.751751e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.506e0

GenotypeDepth
all individuals: 148
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 82
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 441
bin: 5.75e1
variant carriers: 7

GenotypeDepth
all individuals: 3630
bin: 4.25e1
variant carriers: 15

GenotypeDepth
all individuals: 221
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3235
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1028
bin: 1.25e1
variant carriers: 16

GenotypeQuality
all individuals: 11873
bin: 6.25e1
variant carriers: 13

GenotypeQuality
all individuals: 3154
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 2145
bin: 2.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2526
bin: 3.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1461
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2300
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4104
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1379
bin: 1.75e1
variant carriers: 19

GenotypeQuality
all individuals: 5456
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1050
bin: 7.5e0
variant carriers: 15

GenotypeQuality
all individuals: 2827
bin: 2.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2885
bin: 5.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2958
bin: 2.5e0
variant carriers: 12

GenotypeQuality
all individuals: 2717
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2807
bin: 5.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2406
bin: 4.25e1
variant carriers: 16

GenotypeQuality
all individuals: 2497
bin: 3.25e1
variant carriers: 10

South Asian
type: Population
allele count: 21
allele frequency: 1.38121546961326e-3
allele num: 15204
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 1.881188118811881e-3
allele num: 10100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 69
allele frequency: 1.180374982893116e-3
allele num: 58456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.035246727089627e-4
allele num: 7944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 65
allele frequency: 1.264591439688716e-2
allele num: 5140
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.301495972382048e-4
allele num: 8690
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.740000000000001e1

FS
type: SiteQuality
SIO_000300: 1.46543e2

DP
type: SiteQuality
SIO_000300: 1.729788e6

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 5.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeDepth
all individuals: 12190
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8571
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4712
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4213
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.067463706233988e-4
allele num: 9368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.013e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

DP
type: SiteQuality
SIO_000300: 1.817812e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

QD
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 6.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.21e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

GenotypeDepth
all individuals: 1116
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8686
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 4824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17703
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.405152224824356e-3
allele num: 8540
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.827585e6

FS
type: SiteQuality
SIO_000300: 5.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.925e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.68e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

GenotypeDepth
all individuals: 176
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12357
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4839
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8690
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2883
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2517
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538130248869474e-5
allele num: 65014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.067e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.883e0

DP
type: SiteQuality
SIO_000300: 1.82951e6

VQSLOD
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 287
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12420
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65028
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.092360180333861e-5
allele num: 16414
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 1.833452e6

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.791e-1

FS
type: SiteQuality
SIO_000300: 1.777e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

GenotypeDepth
all individuals: 176
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 539
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 677
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172607879924953e-4
allele num: 8528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.777e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

VQSLOD
type: SiteQuality
SIO_000300: -4.791e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 1.833452e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1