http://identifiers.org/exac.variant/17-40761362-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761362
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761362
    reference: chr 17
allele count: 11
allele frequency: 1.003082198026664e-4
allele num: 109662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.41G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1193G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-574G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-20G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-20G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+154G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-20G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-20G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1193G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-20G>T
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18007
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

17-40761362-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761362
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761362
    reference: chr 17
allele count: 2
allele frequency: 1.823785814593934e-5
allele num: 109662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-574G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1193G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-20G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-20G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1193G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-20G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.41G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-20G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-20G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+154G>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4493
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

17-40761368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761368
    reference: chr 17
allele count: 307
allele frequency: 2.801094890510949e-3
allele num: 109600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-580C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.35C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-26C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1187C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1187C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+148C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 16153
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 17889
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 12
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

17-40761368-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761368
    reference: chr 17
allele count: 7
allele frequency: 6.386861313868614e-5
allele num: 109600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-26C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+148C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.35C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-26C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-26C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1187C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-26C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-580C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-26C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1187C>G
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8894
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

17-40761369-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761369
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761369
    reference: chr 17
allele count: 2
allele frequency: 1.825717050371534e-5
allele num: 109546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+147C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-27C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1186C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.34C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-581C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1186C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9939
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/17-40761372-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761372
    reference: chr 17
allele count: 1
allele frequency: 9.168255831010708e-6
allele num: 109072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-30G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+144G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.31G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-30G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-30G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-30G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-584G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-30G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1183G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1183G>T
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-40761372-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761372
    reference: chr 17
allele count: 1
allele frequency: 9.168255831010708e-6
allele num: 109072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-30G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-30G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1183G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+144G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1183G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-30G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-30G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-584G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.31G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-30G>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22973
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-40761372-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761372
    reference: chr 17
allele count: 3
allele frequency: 2.750476749303213e-5
allele num: 109072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-584G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-30G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+144G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.31G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1183G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1183G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

17-40761373-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761373
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761373
    reference: chr 17
allele count: 1
allele frequency: 9.169096477233134e-6
allele num: 109062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-31C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-31C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-31C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.30C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1182C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-31C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1182C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-31C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-585C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+143C>G
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4489
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

17-40761374-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761374
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761374
    reference: chr 17
allele count: 1
allele frequency: 9.186785727409693e-6
allele num: 108852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.29A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1181A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-32A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-32A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-32A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-32A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-586A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1181A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-32A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+142A>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-40761375-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761375
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761375
    reference: chr 17
allele count: 31
allele frequency: 2.846491469707822e-4
allele num: 108906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-33C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.28C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-33C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-587C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-33C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-33C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-33C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1180C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+141C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1180C>A
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8861
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-40761378-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761378
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761378
    reference: chr 17
allele count: 2
allele frequency: 1.83864087666397e-5
allele num: 108776
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-36G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-36G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-36G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.25G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-590G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1177G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-36G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1177G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-36G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+138G>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22716
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

17-40761378-CCGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761378
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761375
    reference: chr 17
allele count: 521
allele frequency: 4.789659483709642e-3
allele num: 108776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-39_-37delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-593_-591delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1174_-53+1176delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-39_-37delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.22_24delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-39_-37delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-39_-37delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-39_-37delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1174_-148+1176delTCG
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+135_65+137delTCG
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 17581
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22716
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 7
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: CCGA
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-40761380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761380
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761380
    reference: chr 17
allele count: 127
allele frequency: 1.18165916111504e-3
allele num: 107476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+136C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-38C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-592C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1175C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.23C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1175C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 15551
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17508
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

17-40761381-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761381
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761381
    reference: chr 17
allele count: 1
allele frequency: 9.304056568663937e-6
allele num: 107480
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-39T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-39T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-39T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-39T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+135T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-593T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-39T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.22T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1174T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1174T>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-40761382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761382
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761382
    reference: chr 17
allele count: 3
allele frequency: 2.793920429146178e-5
allele num: 107376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000446235
  ensembl transcript: ENST00000543197
  gene symbol: FAM134C
  hgvsc: ENST00000543197.1:c.-594G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-40G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.21G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-40G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+134G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-40G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1173G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1173G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-40G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-40G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-40761383-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761383
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761383
    reference: chr 17
allele count: 5
allele frequency: 4.615526631588664e-5
allele num: 108330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1172T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.20T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-41T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+133T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1172T>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4510
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-40761384-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761384
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761384
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 108378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-42T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-42T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+132T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1171T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-42T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-42T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1171T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.19T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-42T>G
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

17-40761387-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761387
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761387
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 108194
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-45G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1168G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-45G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+129G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-45G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1168G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.16G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-45G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-45G>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

17-40761388-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761388
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761388
    reference: chr 17
allele count: 2
allele frequency: 1.847916474175367e-5
allele num: 108230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-46T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.15T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+128T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1167T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1167T>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3954
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-40761389-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761389
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761389
    reference: chr 17
allele count: 3
allele frequency: 2.779424844352209e-5
allele num: 107936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-47G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-47G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-47G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+127G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-47G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-47G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1166G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.14G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1166G>T
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4301
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

17-40761393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761393
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761393
    reference: chr 17
allele count: 1
allele frequency: 9.268012382064542e-6
allele num: 107898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1162T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465004
  ensembl transcript: ENST00000593251
  gene symbol: FAM134C
  hgvsc: ENST00000593251.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1162T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-51T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.10T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+123T>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

17-40761394-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761394
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761394
    reference: chr 17
allele count: 1
allele frequency: 9.279536765524664e-6
allele num: 107764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141699
  ensembl transcript: ENST00000586796
  gene symbol: FAM134C
  hgvsc: ENST00000586796.1:n.9T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466145
  ensembl transcript: ENST00000585726
  gene symbol: FAM134C
  hgvsc: ENST00000585726.1:c.-52T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000466925
  ensembl transcript: ENST00000586870
  gene symbol: FAM134C
  hgvsc: ENST00000586870.1:c.-52T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1161T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1161T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+122T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000309432
  ensembl transcript: ENST00000309428
  gene symbol: FAM134C
  hgvsc: ENST00000309428.5:c.-52T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467157
  ensembl transcript: ENST00000589797
  gene symbol: FAM134C
  hgvsc: ENST00000589797.1:c.-52T>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

17-40761469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761469
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761469
    reference: chr 17
allele count: 2
allele frequency: 3.717057577221871e-5
allele num: 53806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1086G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1086G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+47G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30458
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5658
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

17-40761475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761475
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761475
    reference: chr 17
allele count: 3
allele frequency: 6.089392278650591e-5
allele num: 49266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1080G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1080G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+41G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19141
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-40761479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761479
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761479
    reference: chr 17
allele count: 1
allele frequency: 2.184932704072714e-5
allele num: 45768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1076G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+37G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1076G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10876
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-40761482-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761482
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761482
    reference: chr 17
allele count: 1
allele frequency: 2.328614008941878e-5
allele num: 42944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1073T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1073T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+34T>C
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30986
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ

17-40761485-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761485
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761485
    reference: chr 17
allele count: 2
allele frequency: 5.178932104200114e-5
allele num: 38618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1070C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1070C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+31C>G
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16302
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1200
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

17-40761485-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761485
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761485
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 38618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+31C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1070C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1070C>A
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19451
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 13953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1200
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 565
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genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 118
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 67
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-40761488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761488
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761488
    reference: chr 17
allele count: 1
allele frequency: 2.897039225911119e-5
allele num: 34518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+28C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1067C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1067C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-40761489-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761489
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761489
    reference: chr 17
allele count: 1
allele frequency: 2.916642361313656e-5
allele num: 34286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1066T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1066T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+27T>G
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-40761502-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761502
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 16964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1053A>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+14A>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1053A>G
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-40761503-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761503
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761503
    reference: chr 17
allele count: 8
allele frequency: 6.643414715163594e-4
allele num: 12042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.65+13T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1052T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1052T>G
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-40761519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761519
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761519
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 5816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1036C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.62C>T
  hgvsp: ENSP00000467332.1:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1036C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro21Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

17-40761522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761522
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761522
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 4408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1033C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1033C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.59C>T
  hgvsp: ENSP00000467332.1:p.Ala20Val
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala20Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

17-40761524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761524
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761524
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 4034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.57C>T
  hgvsp: ENST00000588423.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1031C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1031C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31715
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser19Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-40761524-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761524
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761524
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 4034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.57C>A
  hgvsp: ENST00000588423.1:c.57C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1031C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1031C>A
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31715
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser19Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

17-40761529-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761529
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761528
    reference: chr 17
allele count: 7
allele frequency: 2.457865168539326e-3
allele num: 2848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1025delC
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.51delC
  hgvsp: ENSP00000467332.1:p.Gly18AlafsTer9
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1025delC
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30878
  bin: 2.5e0
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8461
  bin: 7.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29762
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5146
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.75e1
  variant carriers: 71
hgvs: p.Gly18AlafsTer9
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: CG
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

17-40761531-G-GATCCGGAGGCGCCGAGCCGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761531
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761551
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 2500
alternate allele: GATCCGGAGGCGCCGAGCCGC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsp: ENSP00000467332.1:p.Ser17CysfsTer17
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4609
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29096
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser17CysfsTer17
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

17-40761531-GATCCGGAGGCGCCGAGCCGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761531
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761511
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 2500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsp: ENSP00000467332.1:p.Met10IlefsTer30
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4609
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29096
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met10IlefsTer30
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: GATCCGGAGGCGCCGAGCCGC
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

17-40761532-ATCCGGAGGCGCCGAGCCGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761532
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761513
    reference: chr 17
allele count: 25
allele frequency: 1.090750436300175e-2
allele num: 2292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsp: ENSP00000467332.1:p.Met10IlefsTer11
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30102
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 7.5e0
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27988
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
hgvs: p.Met10IlefsTer11
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: ATCCGGAGGCGCCGAGCCGC
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-40761539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761539
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761539
    reference: chr 17
allele count: 1
allele frequency: 6.451612903225806e-4
allele num: 1550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1016C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.42C>T
  hgvsp: ENST00000588423.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1016C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29402
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25598
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala14Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-40761539-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761539
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761539
    reference: chr 17
allele count: 1
allele frequency: 6.451612903225806e-4
allele num: 1550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.42C>G
  hgvsp: ENST00000588423.1:c.42C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1016C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1016C>G
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25598
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala14Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

17-40761540-GCGCCGAGCCGCATCCGGAGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761540
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761520
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsp: ENSP00000467332.1:p.Met10IlefsTer30
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met10IlefsTer30
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: GCGCCGAGCCGCATCCGGAGC
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-40761544-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761544
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761544
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1011G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1011G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.37G>C
  hgvsp: ENSP00000467332.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1059
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
hgvs: p.Gly13Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

17-40761548-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761548
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761548
    reference: chr 17
allele count: 3
allele frequency: 1.893939393939394e-3
allele num: 1584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1007G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1007G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.33G>C
  hgvsp: ENST00000588423.1:c.33G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1894
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 134
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
hgvs: p.Arg11Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-40761549-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761549
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761549
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.32G>T
  hgvsp: ENSP00000467332.1:p.Arg11Leu
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1006G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1006G>T
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Arg11Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-40761551-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761551
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761551
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1004G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1004G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.30G>C
  hgvsp: ENSP00000467332.1:p.Met10Ile
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31829
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met10Ile
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-40761552-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761552
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761552
    reference: chr 17
allele count: 1
allele frequency: 6.944444444444445e-4
allele num: 1440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+1003T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.29T>C
  hgvsp: ENSP00000467332.1:p.Met10Thr
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+1003T>C
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met10Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

17-40761557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761557
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761557
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.24C>T
  hgvsp: ENST00000588423.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+998C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+998C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33435
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32080
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu8Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD

17-40761561-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761561
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761561
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.20G>A
  hgvsp: ENSP00000467332.1:p.Arg7Gln
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+994G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+994G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg7Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-40761568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761568
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761568
    reference: chr 17
allele count: 1
allele frequency: 8.517887563884157e-4
allele num: 1174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+987C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.13C>T
  hgvsp: ENSP00000467332.1:p.Arg5Cys
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+987C>T
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30031
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg5Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-40761573-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761573
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761573
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+982T>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.8T>A
  hgvsp: ENSP00000467332.1:p.Ile3Asn
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+982T>A
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30926
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28953
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile3Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

17-40761619-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761619
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761619
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 2110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+936G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+936G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18499
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/17-40761622-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761622
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761622
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 2258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-42T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+933T>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+933T>G
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17711
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 70
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16724
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

17-40761628-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761628
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761628
    reference: chr 17
allele count: 4862
allele frequency: 9.646825396825397e-1
allele num: 5040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+927T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+927T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-48T>C
  variant of: http://identifiers.org/hgnc/27258
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 1.25e1
  variant carriers: 1196
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 512
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 7.5e0
  variant carriers: 4709
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 2.5e0
  variant carriers: 6849
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.25e1
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 9.75e1
  variant carriers: 384
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 1.25e1
  variant carriers: 2427
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 468
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.25e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.25e1
  variant carriers: 559
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.75e1
  variant carriers: 243
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.75e1
  variant carriers: 413
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 6.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 1.75e1
  variant carriers: 2688
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 205
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 2.25e1
  variant carriers: 1414
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 6.25e1
  variant carriers: 152
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 7.5e0
  variant carriers: 4370
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 146
num of homozygotes: 2345
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

17-40761705-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761705
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761705
    reference: chr 17
allele count: 2
allele frequency: 1.453277139950588e-4
allele num: 13762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.2T>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+850A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-51T>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-51T>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-125A>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+850A>C
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7519
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-40761707-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761707
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761707
    reference: chr 17
allele count: 13
allele frequency: 9.572901325478645e-4
allele num: 13580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+848G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-49C>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-49C>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-127G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.4C>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+848G>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-49C>A
  variant of: http://identifiers.org/hgnc/12417
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18937
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7057
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11949
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-40761716-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761716
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761716
    reference: chr 17
allele count: 1
allele frequency: 7.126567844925884e-5
allele num: 14032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-136A>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.13T>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-40T>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-40T>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+839A>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-40T>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+839A>G
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5553
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-40761724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761724
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761724
    reference: chr 17
allele count: 2
allele frequency: 1.366306872523569e-4
allele num: 14638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+831C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-32G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-144C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+831C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.21G>A
  variant of: http://identifiers.org/hgnc/12417
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13364
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4472
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-40761728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761728
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761728
    reference: chr 17
allele count: 4
allele frequency: 2.693965517241379e-4
allele num: 14848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-148G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-28C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.25C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+827G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+827G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17622
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-40761729-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761729
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761729
    reference: chr 17
allele count: 2
allele frequency: 1.302083333333333e-4
allele num: 15360
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-27G>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-149C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+826C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+826C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-27G>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.26G>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-27G>C
  variant of: http://identifiers.org/hgnc/12417
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum

17-40761729-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761729
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761729
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 15360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-27G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-149C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.26G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-27G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+826C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+826C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-27G>T
  variant of: http://identifiers.org/hgnc/12417
canonical: true
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13954
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-40761735-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761735
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761735
    reference: chr 17
allele count: 1
allele frequency: 6.118453255017132e-5
allele num: 16344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-155T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+820T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.2A>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-21A>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-21A>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-21A>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+820T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.32A>G
  variant of: http://identifiers.org/hgnc/12417
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-40761744-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761744
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761744
    reference: chr 17
allele count: 3
allele frequency: 1.701258931609391e-4
allele num: 17634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+811C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.11G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.41G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+811C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-164C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-12G>T
  variant of: http://identifiers.org/hgnc/12417
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16704
  bin: 7.5e0
  variant carriers: 0
hgvs: c.-164C>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-40761746-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761746
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761746
    reference: chr 17
allele count: 1
allele frequency: 5.58659217877095e-5
allele num: 17900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+809G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-10C>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-10C>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-165-1G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+809G>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.43C>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-10C>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.13C>G
  variant of: http://identifiers.org/hgnc/12417
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
hgvs: c.-165-1G>C
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

17-40761750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761750
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761750
    reference: chr 17
allele count: 3
allele frequency: 1.626368860457552e-4
allele num: 18446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+805C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.17G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.47G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+805C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-6G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-165-5C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/12417
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
hgvs: c.-165-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

17-40761752-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761752
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761752
    reference: chr 17
allele count: 1
allele frequency: 5.359056806002143e-5
allele num: 18660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+803T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.-4A>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.19A>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.49A>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-165-7T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.-4A>G
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+803T>C
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.-4A>G
  variant of: http://identifiers.org/hgnc/12417
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20057
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6097
  bin: 6.25e1
  variant carriers: 0
hgvs: c.-165-7T>C
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-40761770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761770
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761770
    reference: chr 17
allele count: 1
allele frequency: 5.02209722780233e-5
allele num: 19912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+785G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.15C>T
  hgvsp: ENST00000591509.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-165-25G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.15C>T
  hgvsp: ENST00000251413.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.67C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.37C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.15C>T
  hgvsp: ENST00000589688.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+785G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile5Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD

17-40761809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761809
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761809
    reference: chr 17
allele count: 1
allele frequency: 4.976114649681529e-5
allele num: 20096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.101+5G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.49+5G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+746C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-165-64C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+746C>T
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.49+5G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.71+5G>A
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.49+5G>A
  variant of: http://identifiers.org/hgnc/12417
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19098
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
hgvs: c.49+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-40761820-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761820
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761820
    reference: chr 17
allele count: 1
allele frequency: 5.016554630279924e-5
allele num: 19934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+735C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+735C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.49+16G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.101+16G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.49+16G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-165-75C>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.49+16G>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.71+16G>T
  variant of: http://identifiers.org/hgnc/12417
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

17-40761824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761824
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761824
    reference: chr 17
allele count: 1
allele frequency: 5.040830728904123e-5
allele num: 19838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+731G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.49+20C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.71+20C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.49+20C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+731G>A
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.101+20C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.49+20C>T
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-165-79G>A
  variant of: http://identifiers.org/hgnc/27258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

17-40761832-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40761832
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40761832
    reference: chr 17
allele count: 1
allele frequency: 5.077688636132832e-5
allele num: 19694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000465016
  ensembl transcript: ENST00000591547
  gene symbol: FAM134C
  hgvsc: ENST00000591547.1:c.-148+723C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467332
  ensembl transcript: ENST00000588423
  gene symbol: FAM134C
  hgvsc: ENST00000588423.1:c.-165-87C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000464867
  ensembl transcript: ENST00000591509
  gene symbol: TUBG1
  hgvsc: ENST00000591509.1:c.49+28G>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000589613
  gene symbol: TUBG1
  hgvsc: ENST00000589613.1:n.71+28G>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141699
  ensembl protein: ENSP00000467847
  ensembl transcript: ENST00000585894
  gene symbol: FAM134C
  hgvsc: ENST00000585894.1:c.-53+723C>G
  variant of: http://identifiers.org/hgnc/27258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000251413
  ensembl transcript: ENST00000251413
  gene symbol: TUBG1
  hgvsc: ENST00000251413.3:c.49+28G>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl protein: ENSP00000465582
  ensembl transcript: ENST00000589688
  gene symbol: TUBG1
  hgvsc: ENST00000589688.1:c.49+28G>C
  variant of: http://identifiers.org/hgnc/12417
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131462
  ensembl transcript: ENST00000588056
  gene symbol: TUBG1
  hgvsc: ENST00000588056.1:n.101+28G>C
  variant of: http://identifiers.org/hgnc/12417
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1942
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 11
allele frequency: 1.356350184956843e-3
allele num: 8110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.091e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

FS
type: SiteQuality
SIO_000300: 4.134e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.514572e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8908
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.309285856112251e-5
allele num: 60436
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e-1

FS
type: SiteQuality
SIO_000300: 4.134e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

DP
type: SiteQuality
SIO_000300: 1.514572e6

QD
type: SiteQuality
SIO_000300: 1.091e1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 3494
bin: 9.75e1
variant carriers: 293

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 428
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 8894
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 871
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4475
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2961
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.25e-3
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 285
allele frequency: 3.49950884086444e-2
allele num: 8144
num of homozygotes: 12

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.608730132505039e-5
allele num: 60526
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.083156254426973e-5
allele num: 14118
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.4194464158978e-3
allele num: 11272
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

DP
type: SiteQuality
SIO_000300: 1.524684e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.92e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

FS
type: SiteQuality
SIO_000300: 1.127e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

GenotypeQuality
all individuals: 4083
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3494
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 23540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.517887563884157e-4
allele num: 8218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14118
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.524684e6

QD
type: SiteQuality
SIO_000300: 1.215e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

FS
type: SiteQuality
SIO_000300: 1.127e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

GenotypeQuality
all individuals: 934
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4486
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.460024600246002e-4
allele num: 8130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14090
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.072e1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 4.253e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 1.521109e6

GenotypeQuality
all individuals: 952
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657879903179814e-5
allele num: 60318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13860
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 1.517718e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 9.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.91e-1

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.215007215007215e-5
allele num: 13860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

FS
type: SiteQuality
SIO_000300: 5.116e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

QD
type: SiteQuality
SIO_000300: 9.99e0

DP
type: SiteQuality
SIO_000300: 1.517718e6

GenotypeQuality
all individuals: 317
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 2
allele frequency: 1.443001443001443e-4
allele num: 13860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.865248226950355e-5
allele num: 11280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60318
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.91e-1

FS
type: SiteQuality
SIO_000300: 5.116e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 9.99e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.517718e6

GenotypeQuality
all individuals: 941
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.232741617357002e-4
allele num: 8112
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.841e0

VQSLOD
type: SiteQuality
SIO_000300: 5.95e-1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

DP
type: SiteQuality
SIO_000300: 1.51757e6

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 970
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4481
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.660412446451699e-5
allele num: 60226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 8.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

DP
type: SiteQuality
SIO_000300: 1.517197e6

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3465
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 4497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.658044833532299e-5
allele num: 60312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

East Asian
type: Population
allele count: 30
allele frequency: 3.652300949598247e-3
allele num: 8214
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 6.47e0

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.517576e6

GenotypeQuality
all individuals: 948
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3978
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.316969616558312e-5
allele num: 60296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

FS
type: SiteQuality
SIO_000300: 6.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

QD
type: SiteQuality
SIO_000300: 1.5e1

DP
type: SiteQuality
SIO_000300: 1.533176e6

MQ
type: SiteQuality
SIO_000300: 5.744e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

GenotypeQuality
all individuals: 376
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4476
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3978
bin: 9.75e1
variant carriers: 516

GenotypeQuality
all individuals: 946
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8813
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 283
allele frequency: 4.693512007430012e-3
allele num: 60296
num of homozygotes: 1

Latino
type: Population
allele count: 27
allele frequency: 2.392344497607655e-3
allele num: 11286
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.953337271116361e-4
allele num: 13544
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 7.692307692307693e-3
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 197
allele frequency: 3.014075887392901e-2
allele num: 6536
num of homozygotes: 6

African
type: Population
allele count: 4
allele frequency: 4.922471080482402e-4
allele num: 8126
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.5e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

MQ
type: SiteQuality
SIO_000300: 5.744e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

FS
type: SiteQuality
SIO_000300: 6.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

DP
type: SiteQuality
SIO_000300: 1.533176e6

GenotypeQuality
all individuals: 22598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 942
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 426
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 9.75e1
variant carriers: 125

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.844214197096201e-4
allele num: 59646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.343783398646241e-4
allele num: 11228
num of homozygotes: 0

African
type: Population
allele count: 109
allele frequency: 1.346011360829834e-2
allele num: 8098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13380
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.302083333333333e-3
allele num: 768
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.506274e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 1.184e0

QD
type: SiteQuality
SIO_000300: 1.237e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

GenotypeQuality
all individuals: 3545
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 406
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.233045622688039e-4
allele num: 8110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59662
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.504797e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.365e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.412e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4269
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13266
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.218323586744639e-4
allele num: 8208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.232134056185313e-4
allele num: 8116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.909479686386316e-5
allele num: 11224
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.614e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

DP
type: SiteQuality
SIO_000300: 1.535902e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeQuality
all individuals: 392
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8837
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.514463122822959e-4
allele num: 13206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.984547901505333e-5
allele num: 60186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

FS
type: SiteQuality
SIO_000300: 3.722e0

QD
type: SiteQuality
SIO_000300: 1.049e1

DP
type: SiteQuality
SIO_000300: 1.534364e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

GenotypeQuality
all individuals: 8850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3950
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3009
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.610000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.535085e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 1.602e0

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 610
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3951
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8839
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.89e1

DP
type: SiteQuality
SIO_000300: 1.535555e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.799e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.632422530911312e-5
allele num: 13102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.662234042553192e-5
allele num: 60160
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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DP
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.99151442547669e-5
allele num: 60102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.315e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.892e1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.785736530675803e-5
allele num: 12844
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 1.535702e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.021e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

MQRankSum
type: SiteQuality
SIO_000300: -1.013e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3959
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.664946222237022e-5
allele num: 60062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12742
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.179e0

DP
type: SiteQuality
SIO_000300: 1.53599e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
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South Asian
type: Population
allele count: 2
allele frequency: 3.963535473642489e-4
allele num: 5046
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3878
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31748
num of homozygotes: 0

Latino
type: Population
allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

DP
type: SiteQuality
SIO_000300: 5.8824e5

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
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Other
type: Population
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allele frequency: 0.0e0
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African
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 6.462731581214993e-4
allele num: 4642
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2788
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 4586
num of homozygotes: 0

European (Non-Finnish)
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allele num: 27104
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2544
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African
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allele num: 3256
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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FS
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 25526
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
type: SiteQuality
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MQRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 8.685079034219212e-5
allele num: 23028
num of homozygotes: 0

European (Finnish)
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African
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Other
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East Asian
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VQSLOD
type: SiteQuality
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FS
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MQ
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QD
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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MQ
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FS
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DP
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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South Asian
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Latino
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Other
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East Asian
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QD
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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Latino
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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Other
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 7.668711656441718e-4
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African
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European (Finnish)
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DP
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ReadPosRankSum
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QD
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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Other
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Latino
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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Other
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European (Non-Finnish)
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South Asian
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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MQRankSum
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DP
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GenotypeQuality
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Other
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East Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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MQ
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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GenotypeQuality
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 3.431372549019608e-2
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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DP
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BaseQRankSum
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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QD
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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African
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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Other
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South Asian
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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African
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Other
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MQRankSum
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FS
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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European (Finnish)
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Other
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East Asian
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South Asian
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Latino
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African
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European (Non-Finnish)
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QD
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeQuality
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bin: 5.25e1
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.401869158878505e-2
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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FS
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MQ
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

ClippingRankSum
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DP
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MQRankSum
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QD
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.302083333333333e-3
allele num: 768
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

BaseQRankSum
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ReadPosRankSum
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FS
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QD
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.55e-2

QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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QD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.950000000000001e-2

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.712328767123288e-3
allele num: 584
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 184
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Latino
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allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.10015e5

MQ
type: SiteQuality
SIO_000300: 5.177e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: -9.950000000000001e-2

ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
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MQRankSum
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MQ
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.002e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 1034
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 8
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Latino
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allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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Other
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East Asian
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MQ
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VQSLOD
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QD
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DP
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FS
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InbreedingCoeff
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GenotypeQuality
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bin: 8.75e1
variant carriers: 60

South Asian
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allele frequency: 9.683794466403162e-1
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num of homozygotes: 237

Latino
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allele frequency: 9.597701149425287e-1
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East Asian
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allele frequency: 9.685863874345549e-1
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European (Finnish)
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allele frequency: 9.444444444444444e-1
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African
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allele frequency: 9.93127147766323e-1
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num of homozygotes: 574

Other
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allele frequency: 1.0e0
allele num: 50
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European (Non-Finnish)
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allele frequency: 9.512017479970867e-1
allele num: 2746
num of homozygotes: 1242

VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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Latino
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East Asian
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African
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European (Finnish)
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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African
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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SIO_000300: -3.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 4.052e0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 1.91e5

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.801152737752161e-4
allele num: 5552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.938e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.97847e5

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 135
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.41646737273659e-4
allele num: 5854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.073e0

QD
type: SiteQuality
SIO_000300: 1.256e1

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

DP
type: SiteQuality
SIO_000300: 2.12733e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.909999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.481e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.085e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.92e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.92156862745098e-3
allele num: 510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.466204506065858e-4
allele num: 5770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.771e0

DP
type: SiteQuality
SIO_000300: 2.18086e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.84e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.454e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 8.787346221441124e-4
allele num: 2276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.422e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 6.830000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.22376e5

QD
type: SiteQuality
SIO_000300: 1.348e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

GenotypeQuality
all individuals: 966
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.05e-2

FS
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: -1.422e0

DP
type: SiteQuality
SIO_000300: 2.22376e5

QD
type: SiteQuality
SIO_000300: 1.348e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 195
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.491646778042959e-4
allele num: 6704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.660000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

QD
type: SiteQuality
SIO_000300: 1.059e1

DP
type: SiteQuality
SIO_000300: 2.36359e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.5001500150015e-4
allele num: 6666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.378929950358522e-4
allele num: 7252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.683501683501683e-3
allele num: 594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2584
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 2.242e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.60059e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.73e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
allele frequency: 1.661129568106312e-3
allele num: 602
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.73e-2

DP
type: SiteQuality
SIO_000300: 2.65316e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.756e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

QD
type: SiteQuality
SIO_000300: 5.61e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
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Latino
type: Population
allele count: 0
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allele num: 360
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African
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allele count: 3
allele frequency: 1.126972201352367e-3
allele num: 2662
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -5.554e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.23e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.643e0

DP
type: SiteQuality
SIO_000300: 2.74733e5

QD
type: SiteQuality
SIO_000300: 1.458e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.413227812323346e-4
allele num: 7076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.87e-2

MQ
type: SiteQuality
SIO_000300: 5.864e1

QD
type: SiteQuality
SIO_000300: 8.470000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

DP
type: SiteQuality
SIO_000300: 2.78084e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.026e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19056
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.203369434416366e-4
allele num: 8310
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.571e-1

MQ
type: SiteQuality
SIO_000300: 5.751e1

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.97517e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

FS
type: SiteQuality
SIO_000300: 1.319e0

QD
type: SiteQuality
SIO_000300: 9.57e0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.177024482109228e-4
allele num: 8496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.91856e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.538e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.706e1

FS
type: SiteQuality
SIO_000300: 1.122e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.488095238095238e-3
allele num: 672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.693e0

DP
type: SiteQuality
SIO_000300: 2.83638e5

VQSLOD
type: SiteQuality
SIO_000300: -2.329e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.859999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.118e0

FS
type: SiteQuality
SIO_000300: 2.528e0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14842
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7324
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.591954022988506e-4
allele num: 2784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.76752e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.625e0

FS
type: SiteQuality
SIO_000300: 2.616e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.92e-2

QD
type: SiteQuality
SIO_000300: 8.26e0

VQSLOD
type: SiteQuality
SIO_000300: -1.123e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1