15-77325313-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77325313
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77325314
    reference: chr 15
allele count: 4
allele frequency: 9.819324430479184e-5
allele num: 40736
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.929+23dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.869+547dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1031+23dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.78+581dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.593+23dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.872+547dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.929+23dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1158+23dupG
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13605
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11490
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24922
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4737
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-77325314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77325314
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77325314
    reference: chr 15
allele count: 10
allele frequency: 2.498625755834291e-4
allele num: 40022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1031+21G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.929+21G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1158+21G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.869+545G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.593+21G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.929+21G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.78+579G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.872+545G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11238
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24832
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4637
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

15-77325321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77325321
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77325321
    reference: chr 15
allele count: 1
allele frequency: 2.789244672542675e-5
allele num: 35852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.929+28C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.869+552C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.929+28C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1031+28C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.593+28C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.78+586C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.872+552C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1158+28C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

15-77325327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77325327
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77325327
    reference: chr 15
allele count: 1
allele frequency: 3.088135383855228e-5
allele num: 32382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.872+558G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.869+558G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.78+592G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.593+34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.929+34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1158+34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1031+34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.929+34G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-77325327-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77325327
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77325327
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 32382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1031+34G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.78+592G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1158+34G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.872+558G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.929+34G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.929+34G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.593+34G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.869+558G>C
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25401
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

15-77325329-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77325329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77325329
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 32136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.78+594T>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.872+560T>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.593+36T>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.929+36T>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1158+36T>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.929+36T>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1031+36T>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.869+560T>G
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25530
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18334
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5553
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-77325342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77325342
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77325342
    reference: chr 15
allele count: 2
allele frequency: 7.22908985758693e-5
allele num: 27666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.593+49G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.78+607G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1158+49G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.929+49G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.929+49G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.869+573G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.872+573G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1031+49G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9446
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-77325343-GGTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77325343
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77325340
    reference: chr 15
allele count: 1
allele frequency: 3.640865069540523e-5
allele num: 27466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.593+52_593+54delTCG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.929+52_929+54delTCG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1158+52_1158+54delTCG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.929+52_929+54delTCG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.872+576_872+578delTCG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.78+610_78+612delTCG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.869+576_869+578delTCG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1031+52_*1031+54delTCG
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9843
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: GGTC
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

15-77327800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327800
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327800
    reference: chr 15
allele count: 4
allele frequency: 1.191824086764793e-4
allele num: 33562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-49C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-49C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-49C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-49C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-49C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-49C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-49C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-49C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15961
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26544
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9489
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

15-77327803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327803
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327803
    reference: chr 15
allele count: 1
allele frequency: 2.978672703443346e-5
allele num: 33572
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-46T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-46T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-46T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-46T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-46T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-46T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-46T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-46T>C
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11744
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

15-77327814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327814
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327814
    reference: chr 15
allele count: 2
allele frequency: 5.929088106249259e-5
allele num: 33732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-35C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-35C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-35C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-35C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-35C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-35C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-35C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-35C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-77327815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327815
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327815
    reference: chr 15
allele count: 2
allele frequency: 5.850690381465013e-5
allele num: 34184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-34G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-34G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29263
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10927
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3442
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

15-77327817-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327817
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327817
    reference: chr 15
allele count: 1
allele frequency: 2.875546353807223e-5
allele num: 34776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-32G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-32G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-32G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-32G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-32G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-32G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-32G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-32G>C
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10499
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-77327827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327827
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327827
    reference: chr 15
allele count: 1
allele frequency: 2.77700638711469e-5
allele num: 36010
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-22C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-22C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-22C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-22C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-22C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-22C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-22C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-22C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8624
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

15-77327829-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327829
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327829
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 36396
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-20T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-20T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-20T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-20T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-20T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-20T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-20T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-20T>C
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32309
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30838
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

15-77327835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327835
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327835
    reference: chr 15
allele count: 10
allele frequency: 2.70929287455974e-4
allele num: 36910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-14C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-14C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-14C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-14C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-14C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-14C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-14C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-14C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33038
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31897
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-77327838-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327838
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327836
    reference: chr 15
allele count: 1
allele frequency: 2.682547346960674e-5
allele num: 37278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-10_930-9delCT
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-10_594-9delCT
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-10_79-9delCT
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-10_930-9delCT
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-10_873-9delCT
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-10_870-9delCT
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-10_*1032-9delCT
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-10_1159-9delCT
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33367
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: CCT
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

15-77327844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327844
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327844
    reference: chr 15
allele count: 1
allele frequency: 2.624534145189229e-5
allele num: 38102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.873-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.594-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.79-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.930-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.930-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1032-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.870-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1159-5C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 2.75e1
  variant carriers: 0
hgvs: c.930-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-77327858-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327858
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327858
    reference: chr 15
allele count: 1
allele frequency: 2.519018590357197e-5
allele num: 39698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.603A>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1041A>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.882A>C
  hgvsp: ENST00000559295.1:c.882A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.939A>C
  hgvsp: ENST00000379595.3:c.939A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.88A>C
  hgvsp: ENST00000558870.1:c.88A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1168A>C
  hgvsp: ENSP00000452986.1:p.Thr390Pro
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.939A>C
  hgvsp: ENST00000558012.1:c.939A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.879A>C
  hgvsp: ENST00000267939.5:c.879A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr390Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-77327859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327859
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327859
    reference: chr 15
allele count: 92
allele frequency: 2.30564883965716e-3
allele num: 39902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.883C>T
  hgvsp: ENST00000559295.1:c.883C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.604C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.940C>T
  hgvsp: ENST00000558012.1:c.940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1042C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.940C>T
  hgvsp: ENST00000379595.3:c.940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.89C>T
  hgvsp: ENST00000558870.1:c.89C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1169C>T
  hgvsp: ENSP00000452986.1:p.Thr390Ile
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.880C>T
  hgvsp: ENST00000267939.5:c.880C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33931
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 3.25e1
  variant carriers: 3
hgvs: p.Thr390Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

15-77327861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327861
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327861
    reference: chr 15
allele count: 2
allele frequency: 5.001000200040008e-5
allele num: 39992
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.942G>A
  hgvsp: ENST00000558012.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.91G>A
  hgvsp: ENST00000558870.1:c.91G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.882G>A
  hgvsp: ENST00000267939.5:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1044G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1171G>A
  hgvsp: ENSP00000452986.1:p.Ala391Thr
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.885G>A
  hgvsp: ENST00000559295.1:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.942G>A
  hgvsp: ENST00000379595.3:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.606G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33884
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5647
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala391Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

15-77327862-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327862
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327862
    reference: chr 15
allele count: 1
allele frequency: 2.497502497502498e-5
allele num: 40040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1045C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.92C>G
  hgvsp: ENSP00000452779.1:p.Leu32Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1172C>G
  hgvsp: ENSP00000452986.1:p.Ala391Gly
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.883C>G
  hgvsp: ENSP00000267939.5:p.Leu295Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.943C>G
  hgvsp: ENSP00000452746.1:p.Leu315Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.886C>G
  hgvsp: ENSP00000452743.1:p.Leu296Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.607C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.943C>G
  hgvsp: ENSP00000368914.3:p.Leu315Val
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5631
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu315Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

15-77327870-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327870
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327870
    reference: chr 15
allele count: 1
allele frequency: 2.468891961287774e-5
allele num: 40504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1180A>T
  hgvsp: ENSP00000452986.1:p.Lys394Ter
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.891A>T
  hgvsp: ENST00000267939.5:c.891A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.951A>T
  hgvsp: ENST00000379595.3:c.951A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1053A>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.615A>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.100A>T
  hgvsp: ENST00000558870.1:c.100A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.951A>T
  hgvsp: ENST00000558012.1:c.951A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.894A>T
  hgvsp: ENST00000559295.1:c.894A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys394Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ

15-77327873-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327873
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327873
    reference: chr 15
allele count: 2
allele frequency: 4.939735230191662e-5
allele num: 40488
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.954T>C
  hgvsp: ENST00000558012.1:c.954T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.954T>C
  hgvsp: ENST00000379595.3:c.954T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.894T>C
  hgvsp: ENST00000267939.5:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.897T>C
  hgvsp: ENST00000559295.1:c.897T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1183T>C
  hgvsp: ENSP00000452986.1:p.Ser395Pro
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1056T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.618T>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.103T>C
  hgvsp: ENST00000558870.1:c.103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ser395Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

15-77327887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327887
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327887
    reference: chr 15
allele count: 3
allele frequency: 7.757149506128149e-5
allele num: 38674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.968C>T
  hgvsp: ENSP00000368914.3:p.Ser323Leu
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.968C>T
  hgvsp: ENSP00000452746.1:p.Ser323Leu
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.911C>T
  hgvsp: ENSP00000452743.1:p.Ser304Leu
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.117C>T
  hgvsp: ENSP00000452779.1:p.Ser40Leu
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1070C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.908C>T
  hgvsp: ENSP00000267939.5:p.Ser303Leu
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1197C>T
  hgvsp: ENST00000559785.1:c.1197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.632C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser323Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-77327888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327888
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327888
    reference: chr 15
allele count: 2
allele frequency: 5.17651930841702e-5
allele num: 38636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.633G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1071G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.118G>A
  hgvsp: ENST00000558870.1:c.118G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.969G>A
  hgvsp: ENST00000379595.3:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.912G>A
  hgvsp: ENST00000559295.1:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1198G>A
  hgvsp: ENSP00000452986.1:p.Val400Ile
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.969G>A
  hgvsp: ENST00000558012.1:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.909G>A
  hgvsp: ENST00000267939.5:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8914
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32473
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val400Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

15-77327910-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327910
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327910
    reference: chr 15
allele count: 26
allele frequency: 7.447296058661778e-4
allele num: 34912
alternate allele: C
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+6G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+6G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+6G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+6G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+6G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+6G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+6G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+6G>C
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15188
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26415
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6365
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15410
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.75e1
  variant carriers: 1
hgvs: c.985+6G>C
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

15-77327913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327913
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327913
    reference: chr 15
allele count: 2
allele frequency: 5.9776436128878e-5
allele num: 33458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+9G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+9G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+9G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+9G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+9G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+9G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+9G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+9G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17079
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-77327918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327918
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327918
    reference: chr 15
allele count: 1
allele frequency: 3.04062271953296e-5
allele num: 32888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+14G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+14G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+14G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+14G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+14G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+14G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+14G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+14G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18068
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-77327923-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327923
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327923
    reference: chr 15
allele count: 45
allele frequency: 1.411720416614381e-3
allele num: 31876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+19G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+19G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+19G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+19G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+19G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+19G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+19G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+19G>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19326
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23438
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19748
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 6.75e1
  variant carriers: 5
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-77327926-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327926
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327926
    reference: chr 15
allele count: 1
allele frequency: 3.219367716180542e-5
allele num: 31062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+22C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+22C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+22C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+22C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+22C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+22C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+22C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+22C>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22437
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20975
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-77327930-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327930
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327930
    reference: chr 15
allele count: 1
allele frequency: 3.295110056675893e-5
allele num: 30348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+26C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+26C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+26C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+26C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+26C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+26C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+26C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+26C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

15-77327944-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327944
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327944
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 26698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+40C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+40C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+40C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+40C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+40C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+40C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+40C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+40C>G
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21012
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22864
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6329
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum

15-77327945-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327945
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327946
    reference: chr 15
allele count: 6
allele frequency: 2.288853284504463e-4
allele num: 26214
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+48dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+48dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+48dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+48dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+48dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+48dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+48dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+48dupG
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21054
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23182
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4609
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22522
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

15-77327945-T-TGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327945
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327947
    reference: chr 15
allele count: 13
allele frequency: 4.959182116426337e-4
allele num: 26214
alternate allele: TGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+47_649+48dupGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+47_134+48dupGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+47_985+48dupGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+47_925+48dupGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+47_985+48dupGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+47_*1087+48dupGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+47_1214+48dupGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+47_928+48dupGG
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21054
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22522
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9331
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-77327945-T-TGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327945
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327948
    reference: chr 15
allele count: 6
allele frequency: 2.288853284504463e-4
allele num: 26214
alternate allele: TGGG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+46_*1087+48dupGGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+46_925+48dupGGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+46_649+48dupGGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+46_1214+48dupGGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+46_985+48dupGGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+46_928+48dupGGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+46_985+48dupGGG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+46_134+48dupGGG
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21054
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23182
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3528
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22522
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9331
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

15-77327946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327946
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327946
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 26050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+42G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+42G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+42G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+42G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+42G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+42G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+42G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+42G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23182
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-77327948-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327948
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327948
    reference: chr 15
allele count: 2
allele frequency: 7.609191903819814e-5
allele num: 26284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+44G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+44G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+44G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+44G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+44G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+44G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+44G>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+44G>C
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23295
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-77327950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77327950
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77327950
    reference: chr 15
allele count: 1
allele frequency: 3.867275117951891e-5
allele num: 25858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.649+46G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1087+46G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.985+46G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1214+46G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.985+46G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.134+46G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.928+46G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.925+46G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6821
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6622
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21641
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-77328103-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328103
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328103
    reference: chr 15
allele count: 7
allele frequency: 2.333333333333333e-2
allele num: 300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.69C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-40C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-40C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-49C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-40C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-40C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-40C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-40C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-40C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/15-77328105-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328105
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328105
    reference: chr 15
allele count: 1
allele frequency: 2.5e-1
allele num: 4
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-38C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-38C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.71C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-38C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-38C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-38C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-38C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-38C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-47C>A
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-77328106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328106
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328106
    reference: chr 15
allele count: 1
allele frequency: 5.0e-1
allele num: 2
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-37C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-37C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.72C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-37C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-37C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-37C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-46C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-37C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-37C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-77328107-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328107
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328107
    reference: chr 15
allele count: 3
allele frequency: 1.875e-1
allele num: 16
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.73A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-36A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-36A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-36A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-36A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-45A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-36A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-36A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-36A>G
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

15-77328108-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328108
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328109
    reference: chr 15
allele count: 110313
allele frequency: 9.999909349674565e-1
allele num: 110314
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-33dupA
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-33dupA
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-33dupA
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-33dupA
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-42dupA
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-33dupA
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-33dupA
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.76dupA
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-33dupA
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 7.5e0
  variant carriers: 4118
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.75e1
  variant carriers: 1289
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 12677
  bin: 2.25e1
  variant carriers: 12677
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 3.25e1
  variant carriers: 3098
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 12762
  bin: 1.25e1
  variant carriers: 12762
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 2.75e1
  variant carriers: 6781
genotype depth: GenotypeDepth
  all individuals: 16832
  bin: 1.75e1
  variant carriers: 16832
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 531
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 6688
  bin: 5.25e1
  variant carriers: 6688
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 2.25e1
  variant carriers: 1656
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 7.75e1
  variant carriers: 2849
num of homozygotes: 55156
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

15-77328110-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328110
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328111
    reference: chr 15
allele count: 1
allele frequency: 9.103156974838875e-6
allele num: 109852
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-29dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-29dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-29dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-38dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-29dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.80dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-29dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-29dupG
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-29dupG
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15563
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

15-77328114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328114
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328114
    reference: chr 15
allele count: 2
allele frequency: 1.81228365863825e-5
allele num: 110358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-29G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-29G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-29G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.80G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-38G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-29G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-29G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-29G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-29G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13941
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-77328116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328116
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328116
    reference: chr 15
allele count: 1
allele frequency: 9.097856544997999e-6
allele num: 109916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-27G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-27G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-27G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-27G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-27G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-36G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.82G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-27G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-27G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5060
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4510
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

15-77328117-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328117
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328117
    reference: chr 15
allele count: 2
allele frequency: 1.811659842747926e-5
allele num: 110396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-35G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-26G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-26G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-26G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-26G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.83G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-26G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-26G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-26G>T
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10970
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5143
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5053
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

15-77328121-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328121
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328121
    reference: chr 15
allele count: 1
allele frequency: 9.037342298376894e-6
allele num: 110652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-31C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-22C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-22C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-22C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-22C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-22C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.87C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-22C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-22C>G
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-77328135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328135
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328135
    reference: chr 15
allele count: 1
allele frequency: 8.971023593792052e-6
allele num: 111470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-8G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-8G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-8G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-8G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-8G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-8G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-8G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-17G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.101G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
hgvs: c.986-8G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-77328138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328138
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328138
    reference: chr 15
allele count: 1
allele frequency: 8.946784525641484e-6
allele num: 111772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.104C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-14C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-5C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
hgvs: c.986-5C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

15-77328141-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328141
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328141
    reference: chr 15
allele count: 1
allele frequency: 8.933676386506575e-6
allele num: 111936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135-2A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.107A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-11A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926-2A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929-2A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650-2A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088-2A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215-2A>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986-2A>G
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
hgvs: c.986-2A>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

15-77328143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328143
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328143
    reference: chr 15
allele count: 17
allele frequency: 1.517694532728636e-4
allele num: 112012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.109C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1215C>T
  hgvsp: ENST00000559785.1:c.1215C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.929C>T
  hgvsp: ENSP00000452743.1:p.Ala310Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1088C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.986C>T
  hgvsp: ENSP00000452746.1:p.Ala329Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.926C>T
  hgvsp: ENSP00000267939.5:p.Ala309Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.650C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.135C>T
  hgvsp: ENSP00000452779.1:p.Ala46Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-9C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32070
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala329Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

15-77328144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328144
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328144
    reference: chr 15
allele count: 7
allele frequency: 6.236413527671858e-5
allele num: 112244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1216G>A
  hgvsp: ENSP00000452986.1:p.Val406Ile
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.110G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.927G>A
  hgvsp: ENST00000267939.5:c.927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.651G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1089G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.136G>A
  hgvsp: ENST00000558870.1:c.136G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.930G>A
  hgvsp: ENST00000559295.1:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.987G>A
  hgvsp: ENST00000558012.1:c.987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-8G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32444
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val406Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

15-77328146-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328146
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328146
    reference: chr 15
allele count: 1
allele frequency: 8.89632226037756e-6
allele num: 112406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.653C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1091C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1218C>G
  hgvsp: ENST00000559785.1:c.1218C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.989C>G
  hgvsp: ENSP00000452746.1:p.Ser330Cys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.929C>G
  hgvsp: ENSP00000267939.5:p.Ser310Cys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.112C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-6C>G
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.138C>G
  hgvsp: ENSP00000452779.1:p.Ser47Cys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.932C>G
  hgvsp: ENSP00000452743.1:p.Ser311Cys
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser330Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

15-77328147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328147
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328147
    reference: chr 15
allele count: 1
allele frequency: 8.887624871129439e-6
allele num: 112516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.654C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.990C>T
  hgvsp: ENST00000558012.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.113C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.930C>T
  hgvsp: ENST00000267939.5:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.933C>T
  hgvsp: ENST00000559295.1:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1219C>T
  hgvsp: ENSP00000452986.1:p.His407Tyr
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-5C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.139C>T
  hgvsp: ENST00000558870.1:c.139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1092C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14238
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His407Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-77328149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328149
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328149
    reference: chr 15
allele count: 1
allele frequency: 8.870753126940477e-6
allele num: 112730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-3C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.992C>T
  hgvsp: ENSP00000452746.1:p.Thr331Ile
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.141C>T
  hgvsp: ENSP00000452779.1:p.Thr48Ile
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.115C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.932C>T
  hgvsp: ENSP00000267939.5:p.Thr311Ile
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.935C>T
  hgvsp: ENSP00000452743.1:p.Thr312Ile
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1221C>T
  hgvsp: ENST00000559785.1:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1094C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.656C>T
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr331Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

15-77328151-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328151
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328151
    reference: chr 15
allele count: 1
allele frequency: 8.853474988933156e-6
allele num: 112950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1096G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.658G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.986-1G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1223G>A
  hgvsp: ENSP00000452986.1:p.Arg408Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.994G>A
  hgvsp: ENSP00000452746.1:p.Glu332Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.934G>A
  hgvsp: ENSP00000267939.5:p.Glu312Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.117G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.937G>A
  hgvsp: ENSP00000452743.1:p.Glu313Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.143G>A
  hgvsp: ENSP00000452779.1:p.Glu49Lys
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14575
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
hgvs: c.986-1G>A
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-77328153-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328153
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328153
    reference: chr 15
allele count: 1
allele frequency: 8.839544586662894e-6
allele num: 113128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.119G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1225G>T
  hgvsp: ENSP00000452986.1:p.Asp409Tyr
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.660G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1098G>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.145G>T
  hgvsp: ENSP00000452779.1:p.Glu49Asp
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.996G>T
  hgvsp: ENSP00000452746.1:p.Glu332Asp
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.987G>T
  hgvsp: ENSP00000368914.3:p.Glu329Asp
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.936G>T
  hgvsp: ENSP00000267939.5:p.Glu312Asp
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.939G>T
  hgvsp: ENSP00000452743.1:p.Glu313Asp
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu332Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-77328154-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328154
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328154
    reference: chr 15
allele count: 1
allele frequency: 8.832361773538243e-6
allele num: 113220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.146A>C
  hgvsp: ENSP00000452779.1:p.Thr50Pro
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.997A>C
  hgvsp: ENSP00000452746.1:p.Thr333Pro
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1226A>C
  hgvsp: ENSP00000452986.1:p.Asp409Ala
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.988A>C
  hgvsp: ENSP00000368914.3:p.Thr330Pro
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.661A>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1099A>C
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.937A>C
  hgvsp: ENSP00000267939.5:p.Thr313Pro
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.940A>C
  hgvsp: ENSP00000452743.1:p.Thr314Pro
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.120A>C
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43309
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr333Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/15-77328155-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328155
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328155
    reference: chr 15
allele count: 1
allele frequency: 8.830178016388811e-6
allele num: 113248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.938C>A
  hgvsp: ENSP00000267939.5:p.Thr313Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1100C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.941C>A
  hgvsp: ENSP00000452743.1:p.Thr314Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.147C>A
  hgvsp: ENSP00000452779.1:p.Thr50Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.998C>A
  hgvsp: ENSP00000452746.1:p.Thr333Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.662C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.989C>A
  hgvsp: ENSP00000368914.3:p.Thr330Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1227C>A
  hgvsp: ENSP00000452986.1:p.Asp409Glu
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.121C>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr333Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

15-77328159-G-GACCCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328159
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328165
    reference: chr 15
allele count: 1
allele frequency: 8.810883202932263e-6
allele num: 113496
alternate allele: GACCCCC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.949_954dupACCCCC
  hgvsp: ENSP00000267939.5:p.Thr317_Pro318dup
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.158_163dupACCCCC
  hgvsp: ENSP00000452779.1:p.Thr54_Pro55dup
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.1000_1005dupACCCCC
  hgvsp: ENSP00000368914.3:p.Thr334_Pro335dup
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1238_1243dupACCCCC
  hgvsp: ENSP00000452986.1:p.His413_Pro414dup
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.952_957dupACCCCC
  hgvsp: ENSP00000452743.1:p.Thr318_Pro319dup
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1009_1014dupACCCCC
  hgvsp: ENSP00000452746.1:p.Thr337_Pro338dup
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.132_137dupACCCCC
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.673_678dupACCCCC
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr337_Pro338dup
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/15-77328161-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328161
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328161
    reference: chr 15
allele count: 4
allele frequency: 3.522491105709958e-5
allele num: 113556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.153C>A
  hgvsp: ENSP00000452779.1:p.Thr52Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.944C>A
  hgvsp: ENSP00000267939.5:p.Thr315Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1233C>A
  hgvsp: ENSP00000452986.1:p.Asp411Glu
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1106C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.127C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1004C>A
  hgvsp: ENSP00000452746.1:p.Thr335Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.668C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.947C>A
  hgvsp: ENSP00000452743.1:p.Thr316Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.995C>A
  hgvsp: ENSP00000368914.3:p.Thr332Asn
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr335Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-77328165-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328165
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328165
    reference: chr 15
allele count: 1
allele frequency: 8.794610662585968e-6
allele num: 113706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.951C>A
  hgvsp: ENST00000559295.1:c.951C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.157C>A
  hgvsp: ENST00000558870.1:c.157C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1110C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.948C>A
  hgvsp: ENST00000267939.5:c.948C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.131C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.672C>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1237C>A
  hgvsp: ENSP00000452986.1:p.His413Asn
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1008C>A
  hgvsp: ENST00000558012.1:c.1008C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.999C>A
  hgvsp: ENST00000379595.3:c.999C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His413Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-77328171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328171
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328171
    reference: chr 15
allele count: 8
allele frequency: 7.021978793624044e-5
allele num: 113928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.957C>T
  hgvsp: ENST00000559295.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.137C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1243C>T
  hgvsp: ENSP00000452986.1:p.Arg415Ter
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.954C>T
  hgvsp: ENST00000267939.5:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.1005C>T
  hgvsp: ENST00000379595.3:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1014C>T
  hgvsp: ENST00000558012.1:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1116C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.678C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.163C>T
  hgvsp: ENST00000558870.1:c.163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33638
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16003
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg415Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

15-77328172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328172
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328172
    reference: chr 15
allele count: 2
allele frequency: 1.755371436595984e-5
allele num: 113936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.958G>A
  hgvsp: ENSP00000452743.1:p.Glu320Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1244G>A
  hgvsp: ENSP00000452986.1:p.Arg415Gln
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1015G>A
  hgvsp: ENSP00000452746.1:p.Glu339Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.138G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.679G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.955G>A
  hgvsp: ENSP00000267939.5:p.Glu319Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.1006G>A
  hgvsp: ENSP00000368914.3:p.Glu336Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.164G>A
  hgvsp: ENSP00000452779.1:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1117G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33530
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu339Lys
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

15-77328175-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328175
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328175
    reference: chr 15
allele count: 25
allele frequency: 2.191406181518557e-4
allele num: 114082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.167C>T
  hgvsp: ENSP00000452779.1:p.Arg57Trp
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1018C>T
  hgvsp: ENSP00000452746.1:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.1009C>T
  hgvsp: ENSP00000368914.3:p.Arg337Trp
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1247C>T
  hgvsp: ENSP00000452986.1:p.Ala416Val
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1120C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.958C>T
  hgvsp: ENSP00000267939.5:p.Arg320Trp
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.141C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.682C>T
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.961C>T
  hgvsp: ENSP00000452743.1:p.Arg321Trp
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33651
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16296
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Arg340Trp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-77328176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328176
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328176
    reference: chr 15
allele count: 4
allele frequency: 3.50594257266066e-5
allele num: 114092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.168G>A
  hgvsp: ENSP00000452779.1:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.1010G>A
  hgvsp: ENSP00000368914.3:p.Arg337Gln
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.959G>A
  hgvsp: ENSP00000267939.5:p.Arg320Gln
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1019G>A
  hgvsp: ENSP00000452746.1:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1248G>A
  hgvsp: ENST00000559785.1:c.1248G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.142G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1121G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.683G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.962G>A
  hgvsp: ENSP00000452743.1:p.Arg321Gln
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16431
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33603
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg340Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-77328181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328181
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328181
    reference: chr 15
allele count: 1
allele frequency: 8.75258201169345e-6
allele num: 114252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.688G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.173G>A
  hgvsp: ENSP00000452779.1:p.Glu59Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.964G>A
  hgvsp: ENSP00000267939.5:p.Glu322Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.147G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.1015G>A
  hgvsp: ENSP00000368914.3:p.Glu339Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.967G>A
  hgvsp: ENSP00000452743.1:p.Glu323Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1126G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1024G>A
  hgvsp: ENSP00000452746.1:p.Glu342Lys
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.1253G>A
  hgvsp: ENST00000559785.1:c.1253G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45376
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu342Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

15-77328184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77328184
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77328184
    reference: chr 15
allele count: 5
allele frequency: 4.380048005326138e-5
allele num: 114154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452779
  ensembl transcript: ENST00000558870
  gene symbol: PSTPIP1
  hgvsc: ENST00000558870.1:c.176G>A
  hgvsp: ENSP00000452779.1:p.Gly60Ser
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452986
  ensembl transcript: ENST00000559785
  gene symbol: PSTPIP1
  hgvsc: ENST00000559785.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000368914
  ensembl transcript: ENST00000379595
  gene symbol: PSTPIP1
  hgvsc: ENST00000379595.3:c.1018G>A
  hgvsp: ENSP00000368914.3:p.Gly340Ser
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000454118
  ensembl transcript: ENST00000560223
  gene symbol: PSTPIP1
  hgvsc: ENST00000560223.1:c.*1129G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452743
  ensembl transcript: ENST00000559295
  gene symbol: PSTPIP1
  hgvsc: ENST00000559295.1:c.970G>A
  hgvsp: ENSP00000452743.1:p.Gly324Ser
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000267939
  ensembl transcript: ENST00000267939
  gene symbol: PSTPIP1
  hgvsc: ENST00000267939.5:c.967G>A
  hgvsp: ENSP00000267939.5:p.Gly323Ser
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140368
  ensembl protein: ENSP00000452746
  ensembl transcript: ENST00000558012
  gene symbol: PSTPIP1
  hgvsc: ENST00000558012.1:c.1027G>A
  hgvsp: ENSP00000452746.1:p.Gly343Ser
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000557995
  gene symbol: PSTPIP1
  hgvsc: ENST00000557995.1:n.691G>A
  variant of: http://identifiers.org/hgnc/9580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140368
  ensembl transcript: ENST00000560064
  gene symbol: PSTPIP1
  hgvsc: ENST00000560064.1:n.150G>A
  variant of: http://identifiers.org/hgnc/9580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33583
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly343Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

GenotypeQuality
all individuals: 14223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27029
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1961
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.444251877527441e-4
allele num: 20772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.17096018735363e-3
allele num: 854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.041e0

QD
type: SiteQuality
SIO_000300: 6.36e0

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.057e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.86e-2

DP
type: SiteQuality
SIO_000300: 6.30815e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 14675
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 9.75e1
variant carriers: 8

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 4.900999803960007e-4
allele num: 20404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 6.26276e5

FS
type: SiteQuality
SIO_000300: 2.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

GenotypeQuality
all individuals: 3093
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17068
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.580357142857143e-5
allele num: 17920
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.353e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

DP
type: SiteQuality
SIO_000300: 5.96883e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 6.021e0

QD
type: SiteQuality
SIO_000300: 8.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 18447
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5456
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.350819255683983e-5
allele num: 15746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 7.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 1.868e0

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.14e-2

DP
type: SiteQuality
SIO_000300: 5.74922e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18447
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

DP
type: SiteQuality
SIO_000300: 5.74922e5

FS
type: SiteQuality
SIO_000300: 1.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.14e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.99e0

GenotypeQuality
all individuals: 1260
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3813
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.02e-1

QD
type: SiteQuality
SIO_000300: 1.643e1

DP
type: SiteQuality
SIO_000300: 5.73003e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.66e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 612
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9378
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17863
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7721
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12990
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.364625206904706e-4
allele num: 8458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.723e1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.27e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.61257e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

GenotypeQuality
all individuals: 259
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7700
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9028
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.0290088638195e-4
allele num: 2482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.28e-2

DP
type: SiteQuality
SIO_000300: 5.62206e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 4.712e1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

QD
type: SiteQuality
SIO_000300: 1.938e1

GenotypeQuality
all individuals: 14725
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11396
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.730368968779565e-4
allele num: 8456
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.09e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
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SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.016e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.0702e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 6.57616e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.949547834364588e-5
allele num: 16808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.105e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

DP
type: SiteQuality
SIO_000300: 6.61709e5

FS
type: SiteQuality
SIO_000300: 9.51e-1

QD
type: SiteQuality
SIO_000300: 9.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.182033096926714e-4
allele num: 16920
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 6.87244e5

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.529e0

QD
type: SiteQuality
SIO_000300: 8.34e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 7.27802037845706e-4
allele num: 1374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.808550185873606e-5
allele num: 17216
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

DP
type: SiteQuality
SIO_000300: 6.95747e5

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-4
allele num: 1642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

DP
type: SiteQuality
SIO_000300: 7.01616e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 6.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1885
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GenotypeQuality
all individuals: 695
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 570
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.459707359685521e-5
allele num: 18316
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1181e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
SIO_000300: -1.568e0

DP
type: SiteQuality
SIO_000300: 7.25564e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18544
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 1550
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.29612e5

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.014e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2286
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 1902
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Latino
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African
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allele num: 3278
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South Asian
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allele frequency: 9.257116408238834e-4
allele num: 8642
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Other
type: Population
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allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.302226935312831e-5
allele num: 18860
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.24493863421798e-5
allele num: 19066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
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Latino
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
type: Population
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Other
type: Population
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.365e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
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South Asian
type: Population
allele count: 1
allele frequency: 1.146788990825688e-4
allele num: 8720
num of homozygotes: 0

Latino
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.133e1

DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 3.483e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 1819
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5675
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 316
bin: 3.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 9.25e1
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GenotypeQuality
all individuals: 842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34070
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.891889247627434e-5
allele num: 20442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

QD
type: SiteQuality
SIO_000300: 6.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.73895e5

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

GenotypeQuality
all individuals: 699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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bin: 5.75e1
variant carriers: 3

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 93

GenotypeQuality
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GenotypeQuality
all individuals: 34038
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7504
bin: 6.25e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.173622704507513e-4
allele num: 2396
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.051524710830704e-3
allele num: 1902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.126633618747183e-4
allele num: 8876
num of homozygotes: 0

African
type: Population
allele count: 78
allele frequency: 2.152317880794702e-2
allele num: 3624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 4.866180048661801e-4
allele num: 20550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2188
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

DP
type: SiteQuality
SIO_000300: 7.75816e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.277e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

GenotypeQuality
all individuals: 354
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 786
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 252
bin: 5.25e1
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GenotypeQuality
all individuals: 476
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.250731487733513e-4
allele num: 8886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 2.412e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 7.75624e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

QD
type: SiteQuality
SIO_000300: 1.076e1

GenotypeQuality
all individuals: 7524
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 903
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GenotypeQuality
all individuals: 844
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1240
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 353
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variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.145936981757877e-4
allele num: 2412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.1e0

VQSLOD
type: SiteQuality
SIO_000300: -3.123e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.543e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 7.76079e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 1.415e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.899e0

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-1

GenotypeQuality
all individuals: 837
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5823
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variant carriers: 0

GenotypeQuality
all individuals: 476
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variant carriers: 0

GenotypeQuality
all individuals: 671
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variant carriers: 0

GenotypeQuality
all individuals: 7374
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variant carriers: 0

GenotypeQuality
all individuals: 127
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GenotypeQuality
all individuals: 1158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
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variant carriers: 0

GenotypeQuality
all individuals: 1673
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variant carriers: 0

GenotypeQuality
all individuals: 34630
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variant carriers: 0

GenotypeQuality
all individuals: 697
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variant carriers: 0

GenotypeQuality
all individuals: 859
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variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.77326968973747e-5
allele num: 20950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

DP
type: SiteQuality
SIO_000300: 7.74791e5

QD
type: SiteQuality
SIO_000300: 9.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 748
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
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variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
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variant carriers: 0

GenotypeQuality
all individuals: 7375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.770537162484496e-5
allele num: 20962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.73224043715847e-3
allele num: 366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

DP
type: SiteQuality
SIO_000300: 7.73905e5

QD
type: SiteQuality
SIO_000300: 8.92e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 5709
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GenotypeQuality
all individuals: 831
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GenotypeQuality
all individuals: 475
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GenotypeQuality
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GenotypeQuality
all individuals: 1871
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 32447
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.132246376811594e-4
allele num: 8832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.748338081671415e-4
allele num: 2106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.060728744939271e-5
allele num: 19760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.909e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 7.40528e5

GenotypeQuality
all individuals: 386
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
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GenotypeQuality
all individuals: 1150
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
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GenotypeQuality
all individuals: 299
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GenotypeQuality
all individuals: 353
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GenotypeQuality
all individuals: 693
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5662
bin: 6.25e1
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GenotypeQuality
all individuals: 662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.069965524234435e-5
allele num: 19724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2130
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.694760820045558e-4
allele num: 1756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 7.37837e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 9.75e0

FS
type: SiteQuality
SIO_000300: 1.038e0

VQSLOD
type: SiteQuality
SIO_000300: -1.371e0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 2.5e0
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GenotypeQuality
all individuals: 1885
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 4497
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 816
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variant carriers: 0

GenotypeQuality
all individuals: 635
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GenotypeQuality
all individuals: 25752
bin: 2.25e1
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GenotypeQuality
all individuals: 2158
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 3.25e1
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GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1496
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18
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variant carriers: 2

GenotypeQuality
all individuals: 477
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 229
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 8.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.071823204419889e-3
allele num: 1448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 7.15619166148102e-3
allele num: 3214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 6.78073e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.96e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1863
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.345765892563922e-4
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 4.17e0

VQSLOD
type: SiteQuality
SIO_000300: -1.277e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 2.831e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.28e-2

DP
type: SiteQuality
SIO_000300: 6.61266e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
all individuals: 1419
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.200396825396825e-5
allele num: 16128
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

DP
type: SiteQuality
SIO_000300: 6.52387e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 3.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

QD
type: SiteQuality
SIO_000300: 1.213e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 742
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3888
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 901
bin: 2.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1897
bin: 9.75e1
variant carriers: 46

GenotypeQuality
all individuals: 692
bin: 8.25e1
variant carriers: 9

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1458
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.372479240806643e-4
allele num: 8430
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.405994550408719e-4
allele num: 2936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 2.638692238383319e-3
allele num: 15538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.620689655172414e-4
allele num: 1160
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 6.37252e5

FS
type: SiteQuality
SIO_000300: 3.001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.05e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

QD
type: SiteQuality
SIO_000300: 1.343e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 684
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variant carriers: 1

GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 1853
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variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.645401382243488e-5
allele num: 15048
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.4e0

FS
type: SiteQuality
SIO_000300: 1.856e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.271e0

DP
type: SiteQuality
SIO_000300: 6.24281e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
all individuals: 2533
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
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variant carriers: 0

GenotypeQuality
all individuals: 1851
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GenotypeQuality
all individuals: 776
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 844
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variant carriers: 0

GenotypeQuality
all individuals: 612
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.852131012744963e-5
allele num: 14594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1302
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.553e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.55e-1

FS
type: SiteQuality
SIO_000300: 1.3624e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.12409e5

QD
type: SiteQuality
SIO_000300: 5.04e0

GenotypeQuality
all individuals: 653
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1050
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GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 5.62446e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.412e0

QD
type: SiteQuality
SIO_000300: 5.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 448
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.347840642785404e-4
allele num: 11948
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.477700693756194e-4
allele num: 8072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.244e1

FS
type: SiteQuality
SIO_000300: 1.538e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.082e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 5.61142e5

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 448
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GenotypeQuality
all individuals: 989
bin: 6.75e1
variant carriers: 1

African
type: Population
allele count: 12
allele frequency: 4.777070063694267e-3
allele num: 2512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.470588235294118e-3
allele num: 680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.244e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 5.61142e5

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

FS
type: SiteQuality
SIO_000300: 1.538e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.082e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

GenotypeQuality
all individuals: 535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 741
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GenotypeQuality
all individuals: 946
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GenotypeQuality
all individuals: 989
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GenotypeQuality
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GenotypeQuality
all individuals: 1854
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4609
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.388535031847134e-3
allele num: 2512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.61142e5

FS
type: SiteQuality
SIO_000300: 1.538e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.082e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 930
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11876
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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QD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 7.27e-1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 942
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1800
num of homozygotes: 0

South Asian
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allele frequency: 2.457606291472106e-4
allele num: 8138
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2540
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11936
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.586e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQRankSum
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VQSLOD
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QD
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.98e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.579272477693891e-5
allele num: 11656
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1782
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.87e-2

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.55592e5

MQ
type: SiteQuality
SIO_000300: 5.855e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.359e0

VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 7
allele frequency: 3.181818181818182e-1
allele num: 22
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.006e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.050754e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.0e-1
allele num: 2
num of homozygotes: 0

African
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQ
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 0
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
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Other
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African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 5.0e-1
allele num: 2
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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FS
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.875e-1
allele num: 16
num of homozygotes: 0

African
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allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
allele frequency: NaN
allele num: 0
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South Asian
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Other
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
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GenotypeQuality
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variant carriers: 783

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5040

African
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allele frequency: 9.998839637967045e-1
allele num: 8618
num of homozygotes: 4308

Latino
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allele num: 10586
num of homozygotes: 5293

South Asian
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allele frequency: 1.0e0
allele num: 15064
num of homozygotes: 7532

East Asian
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allele frequency: 1.0e0
allele num: 8096
num of homozygotes: 4048

European (Finnish)
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allele frequency: 1.0e0
allele num: 6046
num of homozygotes: 3023

Other
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allele frequency: 1.0e0
allele num: 814
num of homozygotes: 407

European (Non-Finnish)
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allele frequency: 1.0e0
allele num: 61090
num of homozygotes: 30545

MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 1.155969e6

MQ
type: SiteQuality
SIO_000300: 5.475e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.327668613913967e-4
allele num: 15064
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61080
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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SIO_000300: 5.961e1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10626
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60752
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15050
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.7966e1

QD
type: SiteQuality
SIO_000300: 3.088e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.275788646116552e-5
allele num: 61054
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.229e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

QD
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 6.019e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.145e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.232e0

FS
type: SiteQuality
SIO_000300: 4.246e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.024e0

DP
type: SiteQuality
SIO_000300: 1.165128e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633026324384349e-5
allele num: 61236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.184279e6

MQ
type: SiteQuality
SIO_000300: 6.09e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.305e0

QD
type: SiteQuality
SIO_000300: 2.793e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6024
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61662
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.218323586744639e-4
allele num: 8208
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VQSLOD
type: SiteQuality
SIO_000300: -8.421e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.023e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

DP
type: SiteQuality
SIO_000300: 1.269993e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61800
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6044
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
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Latino
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allele count: 1
allele frequency: 9.267840593141798e-5
allele num: 10790
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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Other
type: Population
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 3.245910153206959e-4
allele num: 15404
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Latino
type: Population
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allele frequency: 9.242144177449168e-5
allele num: 10820
num of homozygotes: 0

African
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allele count: 0
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East Asian
type: Population
allele count: 5
allele frequency: 6.056201550387597e-4
allele num: 8256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.692113850030692e-5
allele num: 61906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

FS
type: SiteQuality
SIO_000300: 1.227e0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 1.305644e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.908e0

QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 547
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.255139056831923e-4
allele num: 8270
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.235315847801995e-5
allele num: 10828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15428
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.312369e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.04e1

GenotypeQuality
all individuals: 41042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15480
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.208605269518975e-4
allele num: 8274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.543e0

VQSLOD
type: SiteQuality
SIO_000300: -4.252e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

DP
type: SiteQuality
SIO_000300: 1.317693e6

QD
type: SiteQuality
SIO_000300: 7.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608699848782214e-5
allele num: 62162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10866
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.937e-1

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

FS
type: SiteQuality
SIO_000300: 1.996e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.028e1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.321759e6

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605755026013232e-5
allele num: 62276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -7.34e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.915e0

DP
type: SiteQuality
SIO_000300: 1.328414e6

QD
type: SiteQuality
SIO_000300: 7.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.883e-1

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4394
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variant carriers: 0

GenotypeQuality
all individuals: 411
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.160864785635764e-5
allele num: 10916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.647e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.333979e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.249e0

QD
type: SiteQuality
SIO_000300: 7.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 6.034e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 135
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.60040970488445e-5
allele num: 62484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.065e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.222e0

MQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.338487e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.077e1

FS
type: SiteQuality
SIO_000300: 9.509e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.758e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599130073240157e-5
allele num: 62534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.340059e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 560
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599078930536011e-5
allele num: 62536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 1.341767e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.149e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.145e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 7.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4481
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596220150683182e-5
allele num: 62648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

MQ
type: SiteQuality
SIO_000300: 5.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.348655e6

GenotypeQuality
all individuals: 876
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 955
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.80884828083674e-4
allele num: 8318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 1.35094e6

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.123e0

FS
type: SiteQuality
SIO_000300: 5.277e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.363e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.707e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 724
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
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variant carriers: 0

GenotypeQuality
all individuals: 623
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variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 4503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
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variant carriers: 0

GenotypeQuality
all individuals: 825
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variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593879502709595e-5
allele num: 62740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.85e1

VQSLOD
type: SiteQuality
SIO_000300: -9.147e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

FS
type: SiteQuality
SIO_000300: 1.924e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.355436e6

GenotypeQuality
all individuals: 807
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3518
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
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variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
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variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 9.75e1
variant carriers: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.100837277029486e-5
allele num: 10988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.113266961417348e-4
allele num: 62878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.363967e6

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

FS
type: SiteQuality
SIO_000300: 2.588e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 43663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 635
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variant carriers: 0

GenotypeQuality
all individuals: 842
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variant carriers: 0

GenotypeQuality
all individuals: 800
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variant carriers: 0

GenotypeQuality
all individuals: 361
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variant carriers: 0

GenotypeQuality
all individuals: 3545
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variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4589
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variant carriers: 0

GenotypeQuality
all individuals: 534
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590938017054855e-5
allele num: 62856
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.121579183490354e-4
allele num: 8916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.745e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.332e0

DP
type: SiteQuality
SIO_000300: 1.364965e6

QD
type: SiteQuality
SIO_000300: 6.06e0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4600
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 3506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
all individuals: 44446
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variant carriers: 0

GenotypeQuality
all individuals: 701
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.396357536544453e-4
allele num: 8346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.355258976803305e-5
allele num: 62940
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.237637055269635e-4
allele num: 8938
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.072690560323069e-3
allele num: 15848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 9.43e0

FS
type: SiteQuality
SIO_000300: 2.556e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.369462e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 556
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variant carriers: 0

GenotypeQuality
all individuals: 733
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variant carriers: 0

GenotypeQuality
all individuals: 774
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variant carriers: 0

GenotypeQuality
all individuals: 392
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GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 375
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variant carriers: 0

GenotypeQuality
all individuals: 656
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GenotypeQuality
all individuals: 447
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GenotypeQuality
all individuals: 3506
bin: 2.25e1
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GenotypeQuality
all individuals: 4622
bin: 6.75e1
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GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 1014
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.197318007662835e-4
allele num: 8352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.766292777477678e-5
allele num: 62942
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.035e1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

FS
type: SiteQuality
SIO_000300: 2.7e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 1.370891e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
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GenotypeQuality
all individuals: 659
bin: 3.25e1
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GenotypeQuality
all individuals: 3498
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GenotypeQuality
all individuals: 374
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 330
bin: 4.75e1
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GenotypeQuality
all individuals: 449
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GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 463
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GenotypeQuality
all individuals: 4657
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variant carriers: 0

GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 1012
bin: 7.25e1
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GenotypeQuality
all individuals: 248
bin: 5.75e1
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GenotypeQuality
all individuals: 583
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586445410413428e-5
allele num: 63034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.403e1

MQ
type: SiteQuality
SIO_000300: 6.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.691e-1

DP
type: SiteQuality
SIO_000300: 1.374312e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 452
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.11681929863748e-4
allele num: 8954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.347594261774788e-5
allele num: 63016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

FS
type: SiteQuality
SIO_000300: 1.128e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 1.374952e6