12-95453677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453677
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453677
    reference: chr 12
allele count: 10
allele frequency: 8.627978809684044e-5
allele num: 115902
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.364+5C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1412C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.364+5C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.476+5C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.561+5C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1412C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.364+5C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.364+5C>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14978
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
hgvs: c.364+5C>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

12-95453701-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453701
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453701
    reference: chr 12
allele count: 5
allele frequency: 4.234560791354721e-5
allele num: 118076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.626A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.345A>G
  hgvsp: ENST00000330677.7:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.457A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.345A>G
  hgvsp: ENST00000333003.5:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1436A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.542A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.345A>G
  hgvsp: ENST00000393101.3:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.345A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1436A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15811
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val115Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

12-95453706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453706
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453706
    reference: chr 12
allele count: 11
allele frequency: 9.325669328721367e-5
allele num: 117954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.340G>A
  hgvsp: ENSP00000376813.3:p.Val114Ile
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.340G>A
  hgvsp: ENSP00000328843.7:p.Val114Ile
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.537G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1441G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.340G>A
  hgvsp: ENSP00000333275.4:p.Val114Ile
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1441G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.621G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.452G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.340G>A
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29280
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15861
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val114Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/12-95453721-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453721
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453721
    reference: chr 12
allele count: 1
allele frequency: 8.513391564931637e-6
allele num: 117462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.325G>T
  hgvsp: ENSP00000376813.3:p.Val109Phe
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.325G>T
  hgvsp: ENSP00000333275.4:p.Val109Phe
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.606G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.325G>T
  hgvsp: ENSP00000328843.7:p.Val109Phe
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1456G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.325G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.437G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1456G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.522G>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val109Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

12-95453722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453722
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453722
    reference: chr 12
allele count: 1
allele frequency: 8.515131388477325e-6
allele num: 117438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1457G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.324G>A
  hgvsp: ENST00000393101.3:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.324G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.324G>A
  hgvsp: ENST00000330677.7:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.521G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1457G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.436G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.324G>A
  hgvsp: ENST00000333003.5:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.605G>A
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7014
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys108Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

12-95453727-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453727
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453727
    reference: chr 12
allele count: 2
allele frequency: 1.704187187920721e-5
allele num: 117358
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.319A>G
  hgvsp: ENSP00000333275.4:p.Asn107Asp
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.319A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.600A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.319A>G
  hgvsp: ENSP00000328843.7:p.Asn107Asp
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1462A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.431A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.319A>G
  hgvsp: ENSP00000376813.3:p.Asn107Asp
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1462A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.516A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn107Asp
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-95453740-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453740
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453740
    reference: chr 12
allele count: 2
allele frequency: 1.712739355324907e-5
allele num: 116772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.306A>G
  hgvsp: ENST00000330677.7:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.503A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.306A>G
  hgvsp: ENST00000393101.3:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.587A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.306A>G
  hgvsp: ENST00000333003.5:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1475A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.306A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.418A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1475A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17310
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro102Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

12-95453744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453744
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453744
    reference: chr 12
allele count: 1
allele frequency: 8.619055006809053e-6
allele num: 116022
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.302C>T
  hgvsp: ENSP00000333275.4:p.Ser101Phe
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.302C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.302C>T
  hgvsp: ENSP00000328843.7:p.Ser101Phe
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1479C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.302C>T
  hgvsp: ENSP00000376813.3:p.Ser101Phe
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.414C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.583C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.499C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1479C>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser101Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-95453747-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453747
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453747
    reference: chr 12
allele count: 1
allele frequency: 8.772391529378739e-6
allele num: 113994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.580A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.299A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.299A>T
  hgvsp: ENSP00000328843.7:p.Asn100Ile
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.299A>T
  hgvsp: ENSP00000333275.4:p.Asn100Ile
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.411A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.496A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1482A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.299A>T
  hgvsp: ENSP00000376813.3:p.Asn100Ile
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1482A>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn100Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

12-95453750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453750
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453750
    reference: chr 12
allele count: 1
allele frequency: 9.117931323741269e-6
allele num: 109674
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.296A>G
  hgvsp: ENSP00000333275.4:p.Asp99Gly
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.577A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.408A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.296A>G
  hgvsp: ENSP00000328843.7:p.Asp99Gly
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.493A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.296A>G
  hgvsp: ENSP00000376813.3:p.Asp99Gly
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.296A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1485A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1485A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14541
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp99Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

12-95453754-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453754
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453754
    reference: chr 12
allele count: 7
allele frequency: 8.410024749501405e-5
allele num: 83234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.292A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.573A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1489A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1489A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.292A>G
  hgvsp: ENSP00000376813.3:p.Thr98Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.404A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.292A>G
  hgvsp: ENSP00000333275.4:p.Thr98Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.489A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.292A>G
  hgvsp: ENSP00000328843.7:p.Thr98Ala
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12823
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13443
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr98Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

12-95453762-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453762
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453763
    reference: chr 12
allele count: 10
allele frequency: 1.268713524486171e-3
allele num: 7882
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-3dupT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-3dupT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-3dupT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-3dupT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-3dupT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1498dupT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1498dupT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-3dupT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-3dupT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24114
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

12-95453762-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453762
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453761
    reference: chr 12
allele count: 66
allele frequency: 8.373509261608729e-3
allele num: 7882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-3delT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-3delT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1498delT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-3delT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1498delT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-3delT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-3delT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-3delT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-3delT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 7.5e0
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 7
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TA
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

12-95453762-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453762
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453760
    reference: chr 12
allele count: 97
allele frequency: 1.230652118751586e-2
allele num: 7882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-4_483-3delTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-4_567-3delTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-4_286-3delTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1499_310-1498delTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-4_286-3delTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-4_286-3delTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1499_424-1498delTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-4_398-3delTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-4_286-3delTT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 7.5e0
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 24114
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.75e1
  variant carriers: 11
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: TAA
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

12-95453762-TAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453762
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453759
    reference: chr 12
allele count: 116
allele frequency: 1.471707688403958e-2
allele num: 7882
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 11338
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 24114
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.75e1
  variant carriers: 49
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 10
  allele frequency: 2.74273176083379e-3
  allele num: 3646
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 72
  allele frequency: 2.406417112299465e-2
  allele num: 2992
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 5
  allele frequency: 2.173913043478261e-2
  allele num: 230
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 4
  allele frequency: 2.702702702702703e-2
  allele num: 148
  num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
reference allele: TAAA
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

12-95453762-TAAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453762
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453758
    reference: chr 12
allele count: 49
allele frequency: 6.216696269982238e-3
allele num: 7882
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24114
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11338
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 6.25e1
  variant carriers: 7
num of homozygotes: 1
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 148
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 704
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 3
  allele frequency: 1.304347826086956e-2
  allele num: 230
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 98
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: TAAAA
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

12-95453762-TAAAAAAAAAAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453762
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453750
    reference: chr 12
allele count: 9
allele frequency: 1.141842172037554e-3
allele num: 7882
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 24114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 1
population: African
  type: Population
  allele count: 4
  allele frequency: 5.681818181818182e-3
  allele num: 704
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 3.342245989304813e-4
  allele num: 2992
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 98
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 230
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
reference allele: TAAAAAAAAAAAA
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

12-95453763-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453763
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453763
    reference: chr 12
allele count: 1
allele frequency: 1.963864886095837e-4
allele num: 5092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-3T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-3T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1498T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-3T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-3T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-3T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-3T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-3T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1498T>A
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13170
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 1.25e1
  variant carriers: 0
hgvs: c.286-3T>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

12-95453768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453768
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453768
    reference: chr 12
allele count: 2
allele frequency: 2.542006660057449e-5
allele num: 78678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-8T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-8T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-8T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-8T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-8T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-8T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1503T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1503T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-8T>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17944
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
hgvs: c.286-8T>C
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

12-95453775-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453775
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453775
    reference: chr 12
allele count: 1
allele frequency: 1.244183442406749e-5
allele num: 80374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-15T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-15T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-15T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-15T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-15T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-15T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-15T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1510T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1510T>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14315
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7524
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

12-95453777-A-AAAAAAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453777
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453784
    reference: chr 12
allele count: 1
allele frequency: 1.247318265728683e-5
allele num: 80172
alternate allele: AAAAAAAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-24_567-18dupCTTTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-24_286-18dupCTTTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-24_483-18dupCTTTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-24_286-18dupCTTTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-24_286-18dupCTTTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-24_398-18dupCTTTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-24_286-18dupCTTTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-95453777-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453777
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453778
    reference: chr 12
allele count: 2
allele frequency: 2.494636531457367e-5
allele num: 80172
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-18_398-17insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-18_286-17insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-18_286-17insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-18_483-17insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1513_310-1512insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-18_286-17insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1513_424-1512insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-18_567-17insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-18_286-17insC
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18534
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-95453777-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453777
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453778
    reference: chr 12
allele count: 25
allele frequency: 3.118295664321708e-4
allele num: 80172
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-18_483-17insA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-18_286-17insA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1513_424-1512insA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-18_398-17insA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1513_310-1512insA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-18_286-17insA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-18_286-17insA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-18_286-17insA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-18_567-17insA
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18534
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28185
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 9.75e1
  variant carriers: 20
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

12-95453777-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453777
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453777
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 80172
alternate allele: G
canonical: false
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5274
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 13552
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7342
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 644
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

12-95453777-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453777
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453777
    reference: chr 12
allele count: 8
allele frequency: 9.978546125829467e-5
allele num: 80172
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18534
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7368
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 28185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 644
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 39400
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7996
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5274
  num of homozygotes: 0
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-95453778-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453778
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453778
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 79596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1513T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-18T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-18T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-18T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1513T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-18T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-18T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-18T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-18T>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14283
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28049
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

12-95453779-A-AAAAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453779
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453784
    reference: chr 12
allele count: 4
allele frequency: 5.17290432713447e-5
allele num: 77326
alternate allele: AAAAAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-24_483-20dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-24_398-20dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-24_286-20dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-24_567-20dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1519_424-1515dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-24_286-20dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1519_310-1515dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-24_286-20dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-24_286-20dupCTTTT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18403
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

12-95453780-A-AAAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453780
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453784
    reference: chr 12
allele count: 204
allele frequency: 2.754448975182955e-3
allele num: 74062
alternate allele: AAAAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-24_483-21dupCTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-24_286-21dupCTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1519_310-1516dupCTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-24_398-21dupCTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-24_286-21dupCTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-24_286-21dupCTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1519_424-1516dupCTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-24_286-21dupCTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-24_567-21dupCTTT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 1.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 1.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 13870
  bin: 7.5e0
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 2.5e0
  variant carriers: 8
num of homozygotes: 2
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-95453780-A-AAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453780
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453782
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 74062
alternate allele: AAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-21_286-20insCT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1516_310-1515insCT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-21_286-20insCT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1516_424-1515insCT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-21_483-20insCT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-21_286-20insCT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-21_286-20insCT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-21_567-20insCT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-21_398-20insCT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

12-95453780-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453780
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453781
    reference: chr 12
allele count: 7
allele frequency: 9.451540601117982e-5
allele num: 74062
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-21_398-20insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-21_567-20insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-21_483-20insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-21_286-20insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-21_286-20insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1516_310-1515insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-21_286-20insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1516_424-1515insC
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-21_286-20insC
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13870
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7998
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

12-95453780-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453780
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453780
    reference: chr 12
allele count: 87
allele frequency: 1.174691474710378e-3
allele num: 74062
alternate allele: G
canonical: false
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13870
  bin: 7.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6047
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7998
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 25183
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 9.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 36108
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 600
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 4.166666666666667e-4
  allele num: 7200
  num of homozygotes: 0
population: African
  type: Population
  allele count: 80
  allele frequency: 1.17820324005891e-2
  allele num: 6790
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

12-95453781-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453781
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453778
    reference: chr 12
allele count: 3
allele frequency: 4.06934158053227e-5
allele num: 73722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1519_310-1517delCTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1519_424-1517delCTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-24_483-22delCTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-24_286-22delCTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-24_567-22delCTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-24_286-22delCTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-24_286-22delCTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-24_286-22delCTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-24_398-22delCTT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19433
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25184
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: AAAG
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

12-95453784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453784
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453784
    reference: chr 12
allele count: 141
allele frequency: 2.878373412811824e-3
allele num: 48986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-24C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-24C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-24C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-24C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-24C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1519C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1519C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-24C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-24C>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 19017
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 3.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 1.75e1
  variant carriers: 11
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

12-95453784-GAAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453784
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453780
    reference: chr 12
allele count: 39
allele frequency: 7.961458375862491e-4
allele num: 48986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-28_286-25delTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-28_286-25delTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-28_398-25delTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-28_286-25delTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-28_483-25delTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-28_286-25delTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1523_424-1520delTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-28_567-25delTTTT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1523_310-1520delTTTT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19017
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13371
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: GAAAA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-95453785-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453785
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453785
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 66988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-25T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-25T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-25T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-25T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-25T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1520T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-25T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-25T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1520T>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-95453786-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453786
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453786
    reference: chr 12
allele count: 592
allele frequency: 8.636536048784758e-3
allele num: 68546
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-26T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-26T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-26T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-26T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-26T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-26T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-26T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1521T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1521T>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 2.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15818
  bin: 7.5e0
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 19663
  bin: 1.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 1.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 9.75e1
  variant carriers: 535
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 22
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/12-95453789-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453789
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453789
    reference: chr 12
allele count: 107
allele frequency: 1.849355318192817e-3
allele num: 57858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-29G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-29G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-29G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1524G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-29G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-29G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-29G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-29G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1524G>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19307
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16381
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10392
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 6
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

12-95453789-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453789
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453789
    reference: chr 12
allele count: 1
allele frequency: 1.728369456254969e-5
allele num: 57858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-29G>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1524G>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-29G>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-29G>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-29G>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1524G>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-29G>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-29G>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-29G>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 19307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-95453794-ACG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453794
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453792
    reference: chr 12
allele count: 1
allele frequency: 1.70433241299383e-5
allele num: 58674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-36_398-35delCG
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-36_286-35delCG
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-36_286-35delCG
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1531_424-1530delCG
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1531_310-1530delCG
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-36_286-35delCG
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-36_483-35delCG
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-36_567-35delCG
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-36_286-35delCG
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: ACG
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

12-95453796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453796
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453796
    reference: chr 12
allele count: 1
allele frequency: 1.833315000183331e-5
allele num: 54546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-36C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-36C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-36C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-36C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1531C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1531C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-36C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-36C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-36C>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16681
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

12-95456445-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456445
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456445
    reference: chr 12
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.321A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.124A>G
  hgvsp: ENSP00000328843.7:p.Lys42Glu
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.405A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.124A>G
  hgvsp: ENSP00000333275.4:p.Lys42Glu
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.236A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.124A>G
  hgvsp: ENSP00000376813.3:p.Lys42Glu
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.124A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.148A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.262A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys42Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

12-95453802-CTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453802
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453799
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 48200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-45_286-43delACA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-45_567-43delACA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-45_286-43delACA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-45_398-43delACA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-45_286-43delACA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-45_286-43delACA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1540_310-1538delACA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1540_424-1538delACA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-45_483-43delACA
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21789
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5049
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13697
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CTGT
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

12-95453807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453807
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453807
    reference: chr 12
allele count: 10
allele frequency: 2.147305132059266e-4
allele num: 46570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.424-1542C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-47C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-47C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-47C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-47C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-47C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-47C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-47C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.310-1542C>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22729
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12865
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

12-95453809-T-TACTCAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95453809
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95453816
    reference: chr 12
allele count: 1
allele frequency: 2.182072095662041e-5
allele num: 45828
alternate allele: TACTCAAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.398-56_398-50dupGTTGAGT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.286-56_286-50dupGTTGAGT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.286-56_286-50dupGTTGAGT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.286-56_286-50dupGTTGAGT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.286-56_286-50dupGTTGAGT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.483-56_483-50dupGTTGAGT
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.567-56_567-50dupGTTGAGT
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23069
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 15643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

12-95456233-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456233
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456233
    reference: chr 12
allele count: 1
allele frequency: 4.194982800570518e-5
allele num: 23838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+51T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+51T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+51T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+51T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+51T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+51T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+51T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+51T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+51T>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1931
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

12-95456234-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456234
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456235
    reference: chr 12
allele count: 167
allele frequency: 1.052034773844022e-2
allele num: 15874
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+49dupA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+49dupA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+49dupA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+49dupA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+49dupA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+49dupA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+49dupA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+49dupA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+49dupA
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26357
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 1.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18871
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6691
  bin: 1.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 32
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

12-95456234-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456234
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456234
    reference: chr 12
allele count: 72
allele frequency: 4.535718785435303e-3
allele num: 15874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+50T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+50T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+50T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+50T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+50T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+50T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+50T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+50T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+50T>A
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18871
  bin: 7.5e0
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26357
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6691
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 17834
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.75e1
  variant carriers: 6
num of homozygotes: 2
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-95456234-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456234
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456233
    reference: chr 12
allele count: 168
allele frequency: 1.058334383268237e-2
allele num: 15874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+49delA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+49delA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+49delA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+49delA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+49delA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+49delA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+49delA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+49delA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+49delA
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 26357
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18871
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 17834
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 12
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: AT
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

12-95456235-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456235
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456235
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 15522
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+49A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+49A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+49A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+49A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+49A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+49A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+49A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+49A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+49A>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18878
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26339
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6071
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6799
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

12-95456243-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456243
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456243
    reference: chr 12
allele count: 8
allele frequency: 3.348401138456387e-4
allele num: 23892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+41A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+41A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+41A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+41A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+41A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+41A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+41A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+41A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+41A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19324
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26679
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6737
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11276
  bin: 2.25e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

12-95456244-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456244
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456244
    reference: chr 12
allele count: 36
allele frequency: 1.501752044051393e-3
allele num: 23972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+40A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+40A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+40A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+40A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+40A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+40A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+40A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+40A>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+40A>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26484
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19655
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6415
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21017
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-95456244-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456244
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456244
    reference: chr 12
allele count: 1
allele frequency: 4.171533455698315e-5
allele num: 23972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+40A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+40A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+40A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+40A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+40A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+40A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+40A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+40A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+40A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-95456249-ATG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456249
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456247
    reference: chr 12
allele count: 2
allele frequency: 7.959882193743533e-5
allele num: 25126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+33_566+34delCA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+33_309+34delCA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+33_482+34delCA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+33_285+34delCA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+33_285+34delCA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+33_397+34delCA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+33_423+34delCA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+33_285+34delCA
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+33_285+34delCA
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: ATG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ

12-95456276-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456276
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456276
    reference: chr 12
allele count: 1
allele frequency: 2.662406815761448e-5
allele num: 37560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+8A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+8A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+8A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+8A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+8A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+8A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+8A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+8A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+8A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5492
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 2.75e1
  variant carriers: 0
hgvs: c.285+8A>G
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

12-95456280-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456280
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456280
    reference: chr 12
allele count: 1
allele frequency: 2.440333837668993e-5
allele num: 40978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.285+4A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.285+4A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.423+4A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.309+4A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.566+4A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.397+4A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.285+4A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.285+4A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.482+4A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
hgvs: c.285+4A>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS

12-95456299-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456299
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456299
    reference: chr 12
allele count: 63
allele frequency: 9.836987071388421e-4
allele num: 64044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.551T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.270T>C
  hgvsp: ENST00000333003.5:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.467T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.294T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.382T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.270T>C
  hgvsp: ENST00000393101.3:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.270T>C
  hgvsp: ENST00000330677.7:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.270T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.408T>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20520
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27498
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Ser90Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/12-95456307-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456307
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456307
    reference: chr 12
allele count: 1
allele frequency: 1.359471437505098e-5
allele num: 73558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.543G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.400G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.459G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.262G>T
  hgvsp: ENSP00000333275.4:p.Asp88Tyr
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.286G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.262G>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.262G>T
  hgvsp: ENSP00000328843.7:p.Asp88Tyr
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.262G>T
  hgvsp: ENSP00000376813.3:p.Asp88Tyr
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.374G>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp88Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

12-95456310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456310
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456310
    reference: chr 12
allele count: 1
allele frequency: 1.285413131780554e-5
allele num: 77796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.259C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.259C>T
  hgvsp: ENSP00000328843.7:p.Pro87Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.371C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.259C>T
  hgvsp: ENSP00000333275.4:p.Pro87Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.397C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.259C>T
  hgvsp: ENSP00000376813.3:p.Pro87Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.540C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.283C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.456C>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro87Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

12-95456310-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456310
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456310
    reference: chr 12
allele count: 5
allele frequency: 6.427065658902772e-5
allele num: 77796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.540C>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.456C>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.259C>G
  hgvsp: ENSP00000328843.7:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.259C>G
  hgvsp: ENSP00000333275.4:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.283C>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.259C>G
  hgvsp: ENSP00000376813.3:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.371C>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.259C>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.397C>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro87Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

12-95456313-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456313
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456313
    reference: chr 12
allele count: 7
allele frequency: 8.694572102844367e-5
allele num: 80510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.394A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.537A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.453A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.256A>G
  hgvsp: ENSP00000328843.7:p.Thr86Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.368A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.256A>G
  hgvsp: ENSP00000333275.4:p.Thr86Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.280A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.256A>G
  hgvsp: ENSP00000376813.3:p.Thr86Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.256A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr86Ala
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

12-95456314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456314
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456314
    reference: chr 12
allele count: 2
allele frequency: 2.446423329092866e-5
allele num: 81752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.393C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.536C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.255C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.255C>T
  hgvsp: ENST00000333003.5:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.255C>T
  hgvsp: ENST00000393101.3:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.255C>T
  hgvsp: ENST00000330677.7:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.452C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.367C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.279C>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr85Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

12-95456316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456316
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456316
    reference: chr 12
allele count: 1
allele frequency: 1.195543015637703e-5
allele num: 83644
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.253A>G
  hgvsp: ENSP00000333275.4:p.Thr85Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.253A>G
  hgvsp: ENSP00000376813.3:p.Thr85Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.534A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.253A>G
  hgvsp: ENSP00000328843.7:p.Thr85Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.391A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.450A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.277A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.365A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.253A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr85Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

12-95456335-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456335
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456335
    reference: chr 12
allele count: 1
allele frequency: 9.951040878875931e-6
allele num: 100492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.431T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.346T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.515T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.234T>A
  hgvsp: ENST00000330677.7:c.234T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.234T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.234T>A
  hgvsp: ENST00000393101.3:c.234T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.234T>A
  hgvsp: ENST00000333003.5:c.234T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.372T>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.258T>A
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly78Gly
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

12-95456337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456337
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456337
    reference: chr 12
allele count: 1
allele frequency: 9.794127441186264e-6
allele num: 102102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.370G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.232G>A
  hgvsp: ENSP00000376813.3:p.Gly78Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.232G>A
  hgvsp: ENSP00000333275.4:p.Gly78Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.232G>A
  hgvsp: ENSP00000328843.7:p.Gly78Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.344G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.256G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.513G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.232G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.429G>A
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly78Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-95456349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456349
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456349
    reference: chr 12
allele count: 1
allele frequency: 8.99005699696136e-6
allele num: 111234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.417C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.501C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.244C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.220C>T
  hgvsp: ENSP00000376813.3:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.220C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.358C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.220C>T
  hgvsp: ENSP00000333275.4:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.220C>T
  hgvsp: ENSP00000328843.7:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.332C>T
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5371
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro74Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

12-95456355-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456355
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456355
    reference: chr 12
allele count: 3
allele frequency: 2.619629758994062e-5
allele num: 114520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.326A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.214A>G
  hgvsp: ENSP00000328843.7:p.Thr72Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.411A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.214A>G
  hgvsp: ENSP00000333275.4:p.Thr72Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.214A>G
  hgvsp: ENSP00000376813.3:p.Thr72Ala
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.495A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.214A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.238A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.352A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr72Ala
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-95456362-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456362
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456362
    reference: chr 12
allele count: 1
allele frequency: 8.528639170333982e-6
allele num: 117252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.319T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.345T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.231T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.404T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.207T>C
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.207T>C
  hgvsp: ENST00000393101.3:c.207T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.207T>C
  hgvsp: ENST00000330677.7:c.207T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.207T>C
  hgvsp: ENST00000333003.5:c.207T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.488T>C
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val69Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

12-95456367-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456367
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456367
    reference: chr 12
allele count: 266
allele frequency: 2.246697523564985e-3
allele num: 118396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.202A>G
  hgvsp: ENSP00000328843.7:p.Lys68Glu
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.226A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.202A>G
  hgvsp: ENSP00000376813.3:p.Lys68Glu
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.202A>G
  hgvsp: ENSP00000333275.4:p.Lys68Glu
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.340A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.483A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.399A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.314A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.202A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42834
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11866
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 9.75e1
  variant carriers: 253
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Lys68Glu
num of homozygotes: 7
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

12-95456371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456371
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456371
    reference: chr 12
allele count: 235
allele frequency: 1.968668844768367e-3
allele num: 119370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.198G>A
  hgvsp: ENST00000393101.3:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.310G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.336G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.479G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.222G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.395G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.198G>A
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.198G>A
  hgvsp: ENST00000330677.7:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.198G>A
  hgvsp: ENST00000333003.5:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 12421
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42810
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 9.75e1
  variant carriers: 232
hgvs: p.Pro66Pro
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-95456377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456377
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456377
    reference: chr 12
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.192C>T
  hgvsp: ENST00000330677.7:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.330C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.192C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.216C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.304C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.389C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.192C>T
  hgvsp: ENST00000333003.5:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.473C>T
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.192C>T
  hgvsp: ENST00000393101.3:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51965
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser64Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-95456381-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95456381
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 95456381
    reference: chr 12
allele count: 4
allele frequency: 3.310819758972322e-5
allele num: 120816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552861
  gene symbol: NR2C1
  hgvsc: ENST00000552861.1:n.385A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000376813
  ensembl transcript: ENST00000393101
  gene symbol: NR2C1
  hgvsc: ENST00000393101.3:c.188A>G
  hgvsp: ENSP00000376813.3:p.Asp63Gly
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000545833
  gene symbol: NR2C1
  hgvsc: ENST00000545833.1:n.188A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000551386
  gene symbol: NR2C1
  hgvsc: ENST00000551386.1:n.469A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000333275
  ensembl transcript: ENST00000333003
  gene symbol: NR2C1
  hgvsc: ENST00000333003.5:c.188A>G
  hgvsp: ENSP00000333275.4:p.Asp63Gly
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000548966
  gene symbol: NR2C1
  hgvsc: ENST00000548966.1:n.300A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120798
  ensembl protein: ENSP00000328843
  ensembl transcript: ENST00000330677
  gene symbol: NR2C1
  hgvsc: ENST00000330677.7:c.188A>G
  hgvsp: ENSP00000328843.7:p.Asp63Gly
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000552417
  gene symbol: NR2C1
  hgvsc: ENST00000552417.1:n.212A>G
  variant of: http://identifiers.org/hgnc/7971
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120798
  ensembl transcript: ENST00000546367
  gene symbol: NR2C1
  hgvsc: ENST00000546367.1:n.326A>G
  variant of: http://identifiers.org/hgnc/7971
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp63Gly
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63366
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.967001434720229e-4
allele num: 11152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

DP
type: SiteQuality
SIO_000300: 1.564045e6

MQ
type: SiteQuality
SIO_000300: 5.795e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

QD
type: SiteQuality
SIO_000300: 1.061e1

MQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

FS
type: SiteQuality
SIO_000300: 2.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.935e0

VQSLOD
type: SiteQuality
SIO_000300: -1.648e0

GenotypeQuality
all individuals: 443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.059704513256426e-4
allele num: 9882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.603261e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.526e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 1.345e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

GenotypeQuality
all individuals: 1468
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7174
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.063803929511849e-4
allele num: 9874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.177415369409439e-5
allele num: 16188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.71628753973888e-5
allele num: 64798
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.023e1

VQSLOD
type: SiteQuality
SIO_000300: -4.521e-1

FS
type: SiteQuality
SIO_000300: 1.113e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

MQ
type: SiteQuality
SIO_000300: 5.853e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

DP
type: SiteQuality
SIO_000300: 1.600638e6

GenotypeQuality
all individuals: 441
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549378699141644e-5
allele num: 64542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.087e0

QD
type: SiteQuality
SIO_000300: 1.218e1

MQ
type: SiteQuality
SIO_000300: 5.87e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.889e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.416e0

FS
type: SiteQuality
SIO_000300: 4.235e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.576708e6

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549907005579665e-5
allele num: 64520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

DP
type: SiteQuality
SIO_000300: 1.568883e6

QD
type: SiteQuality
SIO_000300: 1.271e1

FS
type: SiteQuality
SIO_000300: 3.093e0

VQSLOD
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.783803068141277e-4
allele num: 11212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.834e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.82e-1

DP
type: SiteQuality
SIO_000300: 1.531685e6

FS
type: SiteQuality
SIO_000300: 3.034e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

GenotypeQuality
all individuals: 28157
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.117206982543641e-5
allele num: 64160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.449454e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

QD
type: SiteQuality
SIO_000300: 7.37e0

FS
type: SiteQuality
SIO_000300: 1.864e0

VQSLOD
type: SiteQuality
SIO_000300: -2.461e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
all individuals: 1119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3618
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5644
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.205109664979513e-4
allele num: 8298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

QD
type: SiteQuality
SIO_000300: 6.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

FS
type: SiteQuality
SIO_000300: 4.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.414298e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.326e0

GenotypeQuality
all individuals: 94
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15450
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2872
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1005
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589622941438291e-5
allele num: 62908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.698e1

VQSLOD
type: SiteQuality
SIO_000300: -2.293e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.26e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.370761e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

GenotypeQuality
all individuals: 3748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5736
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.075500107550011e-4
allele num: 9298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.323408e6

FS
type: SiteQuality
SIO_000300: 3.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.154e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.870000000000001e-1

GenotypeQuality
all individuals: 355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4759
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.575023892959542e-4
allele num: 12556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43942
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.207e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

DP
type: SiteQuality
SIO_000300: 1.21431e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.139e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

VQSLOD
type: SiteQuality
SIO_000300: -1.569e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

GenotypeQuality
all individuals: 60
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11338
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 1279
bin: 1.25e1
variant carriers: 14

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 43
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.742731760833791e-4
allele num: 3646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.5625e-2
allele num: 64
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.420454545454545e-3
allele num: 704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.756756756756757e-3
allele num: 148
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.347826086956522e-3
allele num: 230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.671122994652406e-3
allele num: 2992
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.224e0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 5.686e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

DP
type: SiteQuality
SIO_000300: 8.41513e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.899e-1

QD
type: SiteQuality
SIO_000300: 3.4e0

GenotypeQuality
all individuals: 11338
bin: 7.5e0
variant carriers: 21

GenotypeQuality
all individuals: 102
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 43
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 177
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 44
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 16

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 24114
bin: 2.5e0
variant carriers: 26

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 52
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 2

East Asian
type: Population
allele count: 10
allele frequency: 4.347826086956522e-2
allele num: 230
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 1.371365880416895e-3
allele num: 3646
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.988636363636364e-2
allele num: 704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.702702702702703e-2
allele num: 148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.8125e-2
allele num: 64
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 9.358288770053475e-3
allele num: 2992
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.686e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

FS
type: SiteQuality
SIO_000300: 7.224e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.899e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

DP
type: SiteQuality
SIO_000300: 8.41513e5

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 3.4e0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 60
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 586
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 11338
bin: 7.5e0
variant carriers: 20

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 102
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1583
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 52
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 177
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 43
bin: 8.25e1
variant carriers: 6

East Asian
type: Population
allele count: 7
allele frequency: 3.043478260869565e-2
allele num: 230
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 1.645639056500274e-3
allele num: 3646
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 2.130681818181818e-2
allele num: 704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.375e-2
allele num: 64
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.020408163265306e-2
allele num: 98
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 62
allele frequency: 2.072192513368984e-2
allele num: 2992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.899e-1

DP
type: SiteQuality
SIO_000300: 8.41513e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.686e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 7.224e0

QD
type: SiteQuality
SIO_000300: 3.4e0

African
type: Population
allele count: 14
allele frequency: 1.988636363636364e-2
allele num: 704
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.040816326530612e-2
allele num: 98
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.40625e-1
allele num: 64
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.899e-1

FS
type: SiteQuality
SIO_000300: 7.224e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.686e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 3.4e0

DP
type: SiteQuality
SIO_000300: 8.41513e5

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.375e-2
allele num: 64
num of homozygotes: 1

South Asian
type: Population
allele count: 6
allele frequency: 1.645639056500274e-3
allele num: 3646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 1.136363636363636e-2
allele num: 2992
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

FS
type: SiteQuality
SIO_000300: 7.224e0

QD
type: SiteQuality
SIO_000300: 3.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.899e-1

MQ
type: SiteQuality
SIO_000300: 5.686e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

DP
type: SiteQuality
SIO_000300: 8.41513e5

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

Latino
type: Population
allele count: 1
allele frequency: 6.756756756756757e-3
allele num: 148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.6875e-2
allele num: 64
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.686e1

DP
type: SiteQuality
SIO_000300: 8.41513e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.899e-1

FS
type: SiteQuality
SIO_000300: 7.224e0

QD
type: SiteQuality
SIO_000300: 3.4e0

GenotypeQuality
all individuals: 2498
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16033
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18095
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.420454545454545e-3
allele num: 704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

FS
type: SiteQuality
SIO_000300: 3.675e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.477e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 8.37194e5

MQ
type: SiteQuality
SIO_000300: 5.805e1

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2944
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2333
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1069
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8747
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.604709314440508e-5
allele num: 38392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.401738155312588e-4
allele num: 7134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.736e0

VQSLOD
type: SiteQuality
SIO_000300: -1.724e0

MQ
type: SiteQuality
SIO_000300: 5.286e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

DP
type: SiteQuality
SIO_000300: 9.67863e5

GenotypeQuality
all individuals: 276
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28081
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.532799756851223e-5
allele num: 39482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.891e0

QD
type: SiteQuality
SIO_000300: 2.447e1

DP
type: SiteQuality
SIO_000300: 9.59779e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.665e1

GenotypeQuality
all individuals: 706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.362026695723236e-4
allele num: 7342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.758e0

DP
type: SiteQuality
SIO_000300: 9.61217e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.519999999999999e-2

QD
type: SiteQuality
SIO_000300: 5.74e0

MQ
type: SiteQuality
SIO_000300: 5.647e1

FS
type: SiteQuality
SIO_000300: 7.055e0

VQSLOD
type: SiteQuality
SIO_000300: -1.249e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
all individuals: 778
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7368
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 2
allele frequency: 2.724053391446472e-4
allele num: 7342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39400
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.249e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.519999999999999e-2

FS
type: SiteQuality
SIO_000300: 7.055e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.758e0

DP
type: SiteQuality
SIO_000300: 9.61217e5

MQ
type: SiteQuality
SIO_000300: 5.647e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 5.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9225
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.844746162927981e-3
allele num: 13552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39400
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.758e0

VQSLOD
type: SiteQuality
SIO_000300: -1.249e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.519999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 9.61217e5

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 7.055e0

MQ
type: SiteQuality
SIO_000300: 5.647e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 7.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 9.61217e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.758e0

MQ
type: SiteQuality
SIO_000300: 5.647e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.519999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.249e0

QD
type: SiteQuality
SIO_000300: 5.74e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.903187721369539e-4
allele num: 13552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.61217e5

QD
type: SiteQuality
SIO_000300: 5.74e0

FS
type: SiteQuality
SIO_000300: 7.055e0

MQ
type: SiteQuality
SIO_000300: 5.647e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -1.249e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.519999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.758e0

GenotypeQuality
all individuals: 2430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 470
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39122
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 9.62496e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.54e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.165e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.31e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

GenotypeQuality
all individuals: 472
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.512172992590352e-4
allele num: 13226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.640612622128334e-5
allele num: 37870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7182
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.326963906581741e-4
allele num: 7536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5144
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 9.62886e5

QD
type: SiteQuality
SIO_000300: 6.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

MQ
type: SiteQuality
SIO_000300: 5.473e1

GenotypeQuality
all individuals: 2596
bin: 1.75e1
variant carriers: 12

GenotypeQuality
all individuals: 651
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 442
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 7998
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 25183
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 6047
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2058
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 3902
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 403
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 682
bin: 9.75e1
variant carriers: 167

GenotypeQuality
all individuals: 453
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1114
bin: 3.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.320544554455445e-4
allele num: 12928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.527777777777778e-3
allele num: 7200
num of homozygotes: 0

African
type: Population
allele count: 186
allele frequency: 2.739322533136966e-2
allele num: 6790
num of homozygotes: 2

East Asian
type: Population
allele count: 2
allele frequency: 3.658982802780827e-4
allele num: 5466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.538938739337543e-5
allele num: 36108
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 9.29711e5

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

FS
type: SiteQuality
SIO_000300: 1.991e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 3902
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2596
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7998
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36108
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

FS
type: SiteQuality
SIO_000300: 1.991e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 9.29711e5

GenotypeQuality
all individuals: 442
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2596
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2899
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 453
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 25183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12928
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.030927835051546e-3
allele num: 6790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36108
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.29711e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 1.991e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

East Asian
type: Population
allele count: 3
allele frequency: 5.488474204171241e-4
allele num: 5466
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.735148514851485e-5
allele num: 12928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 9.29711e5

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

FS
type: SiteQuality
SIO_000300: 1.991e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3879
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7989
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.340747330960854e-5
allele num: 35968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4972
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.29899e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 2.9458e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

MQ
type: SiteQuality
SIO_000300: 5.359e1

QD
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.742e0

GenotypeQuality
all individuals: 826
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 419
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 514
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2373
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 13371
bin: 2.5e0
variant carriers: 12

GenotypeQuality
all individuals: 1776
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8256
bin: 7.5e0
variant carriers: 12

GenotypeQuality
all individuals: 21054
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 484
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 89
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 693
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 375
bin: 9.75e1
variant carriers: 65

GenotypeQuality
all individuals: 2561
bin: 2.75e1
variant carriers: 7

African
type: Population
allele count: 20
allele frequency: 4.04040404040404e-3
allele num: 4950
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 8.77963125548727e-4
allele num: 4556
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 2.882928052143395e-3
allele num: 7978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 85
allele frequency: 3.614252912662641e-3
allele num: 23518
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.84404636459431e-3
allele num: 3796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 5.025125628140704e-3
allele num: 398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.58e-2

MQ
type: SiteQuality
SIO_000300: 5.578e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

FS
type: SiteQuality
SIO_000300: 2.63761e2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 2.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.612e0

DP
type: SiteQuality
SIO_000300: 9.10978e5

VQSLOD
type: SiteQuality
SIO_000300: -6.404000000000001e1

GenotypeQuality
all individuals: 693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21054
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8256
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.75e1
variant carriers: 42

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 1.658304277574624e-3
allele num: 23518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.58e-2

QD
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 9.10978e5

FS
type: SiteQuality
SIO_000300: 2.63761e2

MQ
type: SiteQuality
SIO_000300: 5.578e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e0

VQSLOD
type: SiteQuality
SIO_000300: -6.404000000000001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.612e0

GenotypeQuality
all individuals: 2819
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9267
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5704
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4934
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2642e1

VQSLOD
type: SiteQuality
SIO_000300: -2.444e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

DP
type: SiteQuality
SIO_000300: 8.32806e5

MQ
type: SiteQuality
SIO_000300: 5.465e1

QD
type: SiteQuality
SIO_000300: 4.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.62e-1

GenotypeQuality
all individuals: 1714
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 9287
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 3482
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 26810
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 453
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1728
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 6085
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1536
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 310
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 468
bin: 7.25e1
variant carriers: 6

East Asian
type: Population
allele count: 9
allele frequency: 1.792828685258964e-3
allele num: 5020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4670
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.571428571428571e-3
allele num: 560
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 4.330343334364367e-3
allele num: 6466
num of homozygotes: 0

African
type: Population
allele count: 532
allele frequency: 8.094948265368229e-2
allele num: 6572
num of homozygotes: 22

South Asian
type: Population
allele count: 5
allele frequency: 4.046617028164455e-4
allele num: 12356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 4.862926265880493e-4
allele num: 32902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

DP
type: SiteQuality
SIO_000300: 8.26567e5

MQ
type: SiteQuality
SIO_000300: 5.342e1

QD
type: SiteQuality
SIO_000300: 1.573e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

FS
type: SiteQuality
SIO_000300: 3.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

VQSLOD
type: SiteQuality
SIO_000300: -1.298e-1

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2318
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2063
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 996
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3230
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 953
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 24786
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 274
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 491
bin: 9.75e1
variant carriers: 57

GenotypeQuality
all individuals: 4616
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 238
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 18
allele frequency: 3.281079110462997e-3
allele num: 5486
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.032520325203252e-3
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.153136531365314e-3
allele num: 4336
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 7.648183556405354e-4
allele num: 5230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 2.163391023760633e-3
allele num: 27272
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.86880956830499e-3
allele num: 10702
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -3.45e2

MQ
type: SiteQuality
SIO_000300: 5.677e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.005e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

FS
type: SiteQuality
SIO_000300: 2.70755e2

QD
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e0

DP
type: SiteQuality
SIO_000300: 7.83396e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.199e0

GenotypeQuality
all individuals: 10392
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.666764447051921e-5
allele num: 27272
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

FS
type: SiteQuality
SIO_000300: 2.70755e2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.199e0

DP
type: SiteQuality
SIO_000300: 7.83396e5

MQ
type: SiteQuality
SIO_000300: 5.677e1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -3.45e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.005e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
all individuals: 419
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23843
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.608024245922932e-5
allele num: 27716
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.847e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.138e0

DP
type: SiteQuality
SIO_000300: 7.14827e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.504e0

VQSLOD
type: SiteQuality
SIO_000300: -1.06e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

FS
type: SiteQuality
SIO_000300: 3.40505e2

QD
type: SiteQuality
SIO_000300: 5.57e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 2745
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12655
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3944
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.270663033605813e-4
allele num: 4404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25640
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.239e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

FS
type: SiteQuality
SIO_000300: 6.021e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

VQSLOD
type: SiteQuality
SIO_000300: -1.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 6.89323e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.092e1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 8.33e-1

DP
type: SiteQuality
SIO_000300: 1.460614e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.24e-2

MQ
type: SiteQuality
SIO_000300: 5.897e1

GenotypeQuality
all individuals: 560
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3350
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4350
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 6.45075e5

QD
type: SiteQuality
SIO_000300: 1.641e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.38e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

GenotypeQuality
all individuals: 17086
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2635
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4784
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5651
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13785
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3608
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 2.180685358255452e-3
allele num: 3210
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.062474479379339e-4
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.382e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.31839e5

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5853
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6029
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.688672168042011e-5
allele num: 21328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.2826e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 4.712e1

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18752
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7284
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8188
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7313
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.020386072523904e-5
allele num: 11086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.965e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.99e-2

DP
type: SiteQuality
SIO_000300: 4.47451e5

VQSLOD
type: SiteQuality
SIO_000300: -7.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

QD
type: SiteQuality
SIO_000300: 1.648e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 1468
bin: 2.75e1
variant carriers: 28

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6579
bin: 2.25e1
variant carriers: 34

GenotypeQuality
all individuals: 17834
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 915
bin: 3.75e1
variant carriers: 16

GenotypeQuality
all individuals: 12284
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 6707
bin: 1.25e1
variant carriers: 21

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 368
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 97
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 549
bin: 4.75e1
variant carriers: 14

GenotypeQuality
all individuals: 486
bin: 4.25e1
variant carriers: 10

East Asian
type: Population
allele count: 2
allele frequency: 3.773584905660377e-3
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.016064257028112e-3
allele num: 498
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.329113924050633e-3
allele num: 158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 5.780346820809248e-3
allele num: 7958
num of homozygotes: 0

South Asian
type: Population
allele count: 105
allele frequency: 2.497621313035205e-2
allele num: 4204
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 5.555555555555556e-3
allele num: 1980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.4761e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.482e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
all individuals: 12284
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 6707
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 97
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 15

GenotypeQuality
all individuals: 549
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 368
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 257
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 915
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 6579
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 679
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.769791404875597e-4
allele num: 7958
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 3.333333333333333e-2
allele num: 1980
num of homozygotes: 2

South Asian
type: Population
allele count: 3
allele frequency: 7.136060894386299e-4
allele num: 4204
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 4.4761e5

QD
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.482e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12284
bin: 2.5e0
variant carriers: 12

GenotypeQuality
all individuals: 6707
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 6579
bin: 2.25e1
variant carriers: 23

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 446
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 679
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 6691
bin: 1.75e1
variant carriers: 20

GenotypeQuality
all individuals: 915
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 122
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1468
bin: 2.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 8

African
type: Population
allele count: 11
allele frequency: 5.555555555555556e-3
allele num: 1980
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.69811320754717e-2
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 94
allele frequency: 1.18120130686102e-2
allele num: 7958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.008032128514056e-3
allele num: 498
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.89873417721519e-2
allele num: 158
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 1.189343482397716e-2
allele num: 4204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.482e-1

DP
type: SiteQuality
SIO_000300: 4.4761e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 1412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12203
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7273
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17578
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.36e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.959e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.682e1

QD
type: SiteQuality
SIO_000300: 5.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 4.36766e5

GenotypeQuality
all individuals: 710
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1666
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20637
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 683
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5350
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 511
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1815
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.972575417601596e-4
allele num: 8022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.09e-2

FS
type: SiteQuality
SIO_000300: 3.021e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.59129e5

QD
type: SiteQuality
SIO_000300: 1.551e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e-1

GenotypeQuality
all individuals: 1123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 661
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12411
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 480
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 624
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3202
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1812
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 710
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 140
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 258
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 4.48318804483188e-3
allele num: 8030
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 3.021e0

DP
type: SiteQuality
SIO_000300: 4.64018e5

VQSLOD
type: SiteQuality
SIO_000300: -3.383e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.67e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

QD
type: SiteQuality
SIO_000300: 1.038e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

GenotypeQuality
all individuals: 480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21017
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6415
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.440922190201729e-3
allele num: 694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.383e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.46e-1

FS
type: SiteQuality
SIO_000300: 3.021e0

QD
type: SiteQuality
SIO_000300: 1.038e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.67e-2

DP
type: SiteQuality
SIO_000300: 4.64018e5

GenotypeQuality
all individuals: 1015
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18970
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2634
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.464268112370626e-4
allele num: 8116
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.58e-2

DP
type: SiteQuality
SIO_000300: 5.10449e5

QD
type: SiteQuality
SIO_000300: 3.217e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.233e1

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1658
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.09217999126256e-4
allele num: 9156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.284e0

QD
type: SiteQuality
SIO_000300: 1.477e1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e0

DP
type: SiteQuality
SIO_000300: 6.99494e5

GenotypeQuality
all individuals: 418
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3997
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.068376068376068e-4
allele num: 9360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1946
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

QD
type: SiteQuality
SIO_000300: 1.435e1

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

DP
type: SiteQuality
SIO_000300: 7.31211e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20297
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 900
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 9.75e1
variant carriers: 61

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1109
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 57
allele frequency: 1.697843440962707e-3
allele num: 33572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.021148036253776e-4
allele num: 6620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.076426264800861e-3
allele num: 3716
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 6.95e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.929e0

DP
type: SiteQuality
SIO_000300: 9.08575e5

GenotypeQuality
all individuals: 561
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 573
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.573737581716168e-5
allele num: 38854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.241e0

VQSLOD
type: SiteQuality
SIO_000300: -2.575e-1

QD
type: SiteQuality
SIO_000300: 1.497e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

DP
type: SiteQuality
SIO_000300: 9.82052e5

GenotypeQuality
all individuals: 230
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.419901268028265e-5
allele num: 41324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

FS
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.412e1

DP
type: SiteQuality
SIO_000300: 1.013934e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
all individuals: 435
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2365
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.209950634014132e-4
allele num: 41324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12132
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.013934e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.412e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
all individuals: 405
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2336
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 527
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25719
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.509271237602415e-3
allele num: 4638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

DP
type: SiteQuality
SIO_000300: 1.037692e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

FS
type: SiteQuality
SIO_000300: 8.29e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

VQSLOD
type: SiteQuality
SIO_000300: -1.79e0

GenotypeQuality
all individuals: 645
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 27321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.530364372469636e-4
allele num: 7904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.073e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.047176e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

QD
type: SiteQuality
SIO_000300: 8.42e0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27426
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4798
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.244400199104032e-4
allele num: 8036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.779e0

QD
type: SiteQuality
SIO_000300: 1.21e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.312e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

DP
type: SiteQuality
SIO_000300: 1.063368e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

GenotypeQuality
all individuals: 638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10792
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.848702211047844e-5
allele num: 54092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.214781e6

FS
type: SiteQuality
SIO_000300: 4.445e0

QD
type: SiteQuality
SIO_000300: 7.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.745e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
all individuals: 992
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9942
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 874
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.817586971536588e-5
allele num: 55018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 4.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

FS
type: SiteQuality
SIO_000300: 5.619e0

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.232309e6

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 759
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.554798112218144e-5
allele num: 15256
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 1.586e0

VQSLOD
type: SiteQuality
SIO_000300: -1.191e0

DP
type: SiteQuality
SIO_000300: 1.328686e6

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.141e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.892e1

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.992817238627295e-4
allele num: 10024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.911e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.365575e6

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 1.437e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

GenotypeQuality
all individuals: 2247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.890469416785207e-5
allele num: 11248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

DP
type: SiteQuality
SIO_000300: 1.396768e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.941e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -2.604e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 1.1558e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49939
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1630
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 897
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 249
allele frequency: 2.921163772876584e-2
allele num: 8524
num of homozygotes: 7

South Asian
type: Population
allele count: 12
allele frequency: 7.434023045471441e-4
allele num: 16142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543638665061283e-5
allele num: 64782
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.288329519450801e-3
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.948937828883259e-4
allele num: 10262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

DP
type: SiteQuality
SIO_000300: 1.417896e6

VQSLOD
type: SiteQuality
SIO_000300: 6.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

QD
type: SiteQuality
SIO_000300: 1.52e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50646
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.838393274170948e-4
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.064664419246092e-4
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.531653349723417e-4
allele num: 16270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 173
allele frequency: 2.644047073208009e-3
allele num: 65430
num of homozygotes: 1

Latino
type: Population
allele count: 31
allele frequency: 2.718821259428171e-3
allele num: 11402
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.35975135975136e-3
allele num: 10296
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.437242e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.484e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 6.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510574018126888e-5
allele num: 66200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

FS
type: SiteQuality
SIO_000300: 4.862e0

QD
type: SiteQuality
SIO_000300: 1.204e1

VQSLOD
type: SiteQuality
SIO_000300: 9.83e-1

DP
type: SiteQuality
SIO_000300: 1.445628e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.854e0