15-59225553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225553
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225553
    reference: chr 15
allele count: 1
allele frequency: 1.091774570386707e-5
allele num: 91594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68052G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+50C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

15-59225558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225558
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225558
    reference: chr 15
allele count: 2
allele frequency: 2.15973392078096e-5
allele num: 92604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68057C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+45G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+45G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19860
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

15-59225563-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225563
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225563
    reference: chr 15
allele count: 1
allele frequency: 1.067805659369995e-5
allele num: 93650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68062T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+40A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+40A>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-59225568-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225568
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225568
    reference: chr 15
allele count: 1
allele frequency: 1.044081104220176e-5
allele num: 95778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68067C>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+35G>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

15-59225573-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225573
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225573
    reference: chr 15
allele count: 1
allele frequency: 1.021325271672522e-5
allele num: 97912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68072C>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+30G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+30G>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-59225573-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225573
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225573
    reference: chr 15
allele count: 59
allele frequency: 6.025819102867881e-4
allele num: 97912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68072C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+30G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10596
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

15-59225574-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225574
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225574
    reference: chr 15
allele count: 1
allele frequency: 1.012781300006077e-5
allele num: 98738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68073G>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+29C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+29C>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30378
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-59225577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225577
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225577
    reference: chr 15
allele count: 4
allele frequency: 3.96589331746976e-5
allele num: 100860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68076C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+26G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+26G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-59225585-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225585
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225585
    reference: chr 15
allele count: 33
allele frequency: 3.115617742026851e-4
allele num: 105918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68084G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+18C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+18C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37792
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

15-59225586-TCCTCGCCGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225586
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225576
    reference: chr 15
allele count: 2
allele frequency: 1.880300095895305e-5
allele num: 106366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.162+7_162+16delCCCGGCGAGG
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TCCTCGCCGGG
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

15-59225588-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225588
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225588
    reference: chr 15
allele count: 4
allele frequency: 3.726962711738069e-5
allele num: 107326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68087C>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+15G>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

15-59225590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225590
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225590
    reference: chr 15
allele count: 2
allele frequency: 1.847097286614086e-5
allele num: 108278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+13G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68089C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+13G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

15-59225593-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225593
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225593
    reference: chr 15
allele count: 1
allele frequency: 9.083147128817192e-6
allele num: 110094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68092C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+10G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+10G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

15-59225595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225595
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225595
    reference: chr 15
allele count: 1
allele frequency: 8.995556195239551e-6
allele num: 111166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68094G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+8C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.162+8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

15-59225599-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225599
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225599
    reference: chr 15
allele count: 3
allele frequency: 2.668279493382667e-5
allele num: 112432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.155+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.178+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.46+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.171+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.197+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-575+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68098T>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.162+4A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.213+4A>G
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.162+4A>G
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

15-59225608-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225608
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225608
    reference: chr 15
allele count: 1
allele frequency: 8.757947837662679e-6
allele num: 114182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.157A>C
  hgvsp: ENSP00000453179.1:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.173A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.157A>C
  hgvsp: ENSP00000249736.7:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.157A>C
  hgvsp: ENSP00000369887.2:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-580A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.157A>C
  hgvsp: ENSP00000454000.1:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.192A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.157A>C
  hgvsp: ENSP00000453065.1:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.208A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.157A>C
  hgvsp: ENSP00000453775.1:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68107T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.150A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.157A>C
  hgvsp: ENSP00000453371.1:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.157A>C
  hgvsp: ENSP00000453711.1:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.166A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.41A>C
  hgvsp: ENSP00000452945.1:p.Lys15Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.157A>C
  hgvsp: ENSP00000453987.1:p.Lys53Gln
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys53Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-59225609-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225609
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225609
    reference: chr 15
allele count: 8
allele frequency: 6.998512816026594e-5
allele num: 114310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.156C>G
  hgvsp: ENST00000492526.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.165C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.156C>G
  hgvsp: ENST00000558486.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68108G>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.156C>G
  hgvsp: ENST00000380516.2:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.156C>G
  hgvsp: ENST00000560682.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.156C>G
  hgvsp: ENST00000249736.7:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.156C>G
  hgvsp: ENST00000559305.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.149C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.156C>G
  hgvsp: ENST00000557924.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.156C>G
  hgvsp: ENST00000559261.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.172C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.156C>G
  hgvsp: ENST00000559880.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.207C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-581C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.191C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.40C>G
  hgvsp: ENST00000558756.1:c.40C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu52Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

15-59225609-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225609
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225609
    reference: chr 15
allele count: 2
allele frequency: 1.749628204006649e-5
allele num: 114310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.156C>A
  hgvsp: ENST00000557924.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.156C>A
  hgvsp: ENST00000380516.2:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.207C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.156C>A
  hgvsp: ENST00000559880.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-581C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.149C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.156C>A
  hgvsp: ENST00000492526.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.156C>A
  hgvsp: ENST00000249736.7:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.156C>A
  hgvsp: ENST00000559261.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.156C>A
  hgvsp: ENST00000559305.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.156C>A
  hgvsp: ENST00000558486.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.40C>A
  hgvsp: ENST00000558756.1:c.40C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.156C>A
  hgvsp: ENST00000560682.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.191C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.172C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68108G>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.165C>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu52Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

15-59225616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225616
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225616
    reference: chr 15
allele count: 9
allele frequency: 7.804235098246649e-5
allele num: 115322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.149C>T
  hgvsp: ENSP00000453065.1:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68115G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.33C>T
  hgvsp: ENSP00000452945.1:p.Ser12Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.149C>T
  hgvsp: ENSP00000453711.1:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.149C>T
  hgvsp: ENSP00000369887.2:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.149C>T
  hgvsp: ENSP00000453775.1:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.165C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.149C>T
  hgvsp: ENSP00000453371.1:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.149C>T
  hgvsp: ENSP00000249736.7:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.200C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.149C>T
  hgvsp: ENSP00000454000.1:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.149C>T
  hgvsp: ENSP00000453179.1:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.149C>T
  hgvsp: ENSP00000453987.1:p.Ser50Phe
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-588C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.142C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.158C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.184C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser50Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

15-59225616-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225616
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225616
    reference: chr 15
allele count: 1
allele frequency: 8.671372331385166e-6
allele num: 115322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.149C>G
  hgvsp: ENSP00000454000.1:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.33C>G
  hgvsp: ENSP00000452945.1:p.Ser12Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.184C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-588C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.149C>G
  hgvsp: ENSP00000453775.1:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.149C>G
  hgvsp: ENSP00000453065.1:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.149C>G
  hgvsp: ENSP00000369887.2:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.142C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68115G>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.149C>G
  hgvsp: ENSP00000453711.1:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.149C>G
  hgvsp: ENSP00000453371.1:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.158C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.149C>G
  hgvsp: ENSP00000249736.7:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.200C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.149C>G
  hgvsp: ENSP00000453179.1:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.165C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.149C>G
  hgvsp: ENSP00000453987.1:p.Ser50Cys
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser50Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

15-59225624-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225624
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225624
    reference: chr 15
allele count: 1
allele frequency: 8.632745731107236e-6
allele num: 115838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68123C>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.141G>C
  hgvsp: ENST00000559305.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.141G>C
  hgvsp: ENST00000559261.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.141G>C
  hgvsp: ENST00000492526.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.141G>C
  hgvsp: ENST00000558486.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.141G>C
  hgvsp: ENST00000557924.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.141G>C
  hgvsp: ENST00000380516.2:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.141G>C
  hgvsp: ENST00000560682.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.176G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.150G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.141G>C
  hgvsp: ENST00000559880.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.157G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-596G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.134G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.141G>C
  hgvsp: ENST00000249736.7:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.25G>C
  hgvsp: ENST00000558756.1:c.25G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.192G>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val47Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

15-59225636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225636
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225636
    reference: chr 15
allele count: 1
allele frequency: 8.609111884018045e-6
allele num: 116156
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.129A>G
  hgvsp: ENST00000380516.2:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.122A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.13A>G
  hgvsp: ENST00000558756.1:c.13A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.129A>G
  hgvsp: ENST00000559305.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.129A>G
  hgvsp: ENST00000557924.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.129A>G
  hgvsp: ENST00000558486.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-608A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.129A>G
  hgvsp: ENST00000559261.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.145A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.180A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.129A>G
  hgvsp: ENST00000492526.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.129A>G
  hgvsp: ENST00000249736.7:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.129A>G
  hgvsp: ENST00000560682.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.138A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.164A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.129A>G
  hgvsp: ENST00000559880.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68135T>C
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly43Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

15-59225636-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225636
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225636
    reference: chr 15
allele count: 1
allele frequency: 8.609111884018045e-6
allele num: 116156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-608A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.129A>C
  hgvsp: ENST00000492526.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.129A>C
  hgvsp: ENST00000559880.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.129A>C
  hgvsp: ENST00000559261.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.129A>C
  hgvsp: ENST00000558486.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.129A>C
  hgvsp: ENST00000557924.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.122A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.13A>C
  hgvsp: ENST00000558756.1:c.13A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68135T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.129A>C
  hgvsp: ENST00000559305.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.129A>C
  hgvsp: ENST00000380516.2:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.180A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.129A>C
  hgvsp: ENST00000249736.7:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.164A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.129A>C
  hgvsp: ENST00000560682.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.138A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.145A>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly43Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-59225639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225639
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225639
    reference: chr 15
allele count: 1
allele frequency: 8.60540763815982e-6
allele num: 116206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.126C>T
  hgvsp: ENST00000492526.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.126C>T
  hgvsp: ENST00000559880.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.126C>T
  hgvsp: ENST00000380516.2:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.135C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.126C>T
  hgvsp: ENST00000559261.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.126C>T
  hgvsp: ENST00000558486.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.161C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.126C>T
  hgvsp: ENST00000560682.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.119C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.126C>T
  hgvsp: ENST00000557924.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.126C>T
  hgvsp: ENST00000559305.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-611C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.10C>T
  hgvsp: ENST00000558756.1:c.10C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.126C>T
  hgvsp: ENST00000249736.7:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.142C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.177C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68138G>A
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr42Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

15-59225644-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225644
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225644
    reference: chr 15
allele count: 2
allele frequency: 1.719660882873897e-5
allele num: 116302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.130A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000452945
  ensembl transcript: ENST00000558756
  gene symbol: SLTM
  hgvsc: ENST00000558756.1:c.5A>G
  hgvsp: ENSP00000452945.1:p.Ile3Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.114A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.156A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.121A>G
  hgvsp: ENSP00000453179.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-616A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.121A>G
  hgvsp: ENSP00000453711.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.121A>G
  hgvsp: ENSP00000453775.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.172A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.121A>G
  hgvsp: ENSP00000453065.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68143T>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.121A>G
  hgvsp: ENSP00000249736.7:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.121A>G
  hgvsp: ENSP00000454000.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.121A>G
  hgvsp: ENSP00000453987.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.137A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.121A>G
  hgvsp: ENSP00000453371.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.121A>G
  hgvsp: ENSP00000369887.2:p.Ile41Val
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile41Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-59225658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225658
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225658
    reference: chr 15
allele count: 1
allele frequency: 8.630063689870032e-6
allele num: 115874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.107G>A
  hgvsp: ENSP00000249736.7:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.107G>A
  hgvsp: ENSP00000453371.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68157C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.142G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.107G>A
  hgvsp: ENSP00000453179.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.107G>A
  hgvsp: ENSP00000369887.2:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.107G>A
  hgvsp: ENSP00000454000.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.107G>A
  hgvsp: ENSP00000453987.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-630G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.123G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.107G>A
  hgvsp: ENSP00000453711.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.107G>A
  hgvsp: ENSP00000453775.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.107G>A
  hgvsp: ENSP00000453065.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.158G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.100G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.116G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12803
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg36Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-59225663-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225663
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225663
    reference: chr 15
allele count: 1
allele frequency: 8.6333419666753e-6
allele num: 115830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.102G>C
  hgvsp: ENST00000558486.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.102G>C
  hgvsp: ENST00000492526.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.111G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.137G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.102G>C
  hgvsp: ENST00000559305.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.102G>C
  hgvsp: ENST00000249736.7:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.95G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.153G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.102G>C
  hgvsp: ENST00000380516.2:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.102G>C
  hgvsp: ENST00000557924.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.118G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.102G>C
  hgvsp: ENST00000559261.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68162C>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.102G>C
  hgvsp: ENST00000559880.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.102G>C
  hgvsp: ENST00000560682.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-635G>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu34Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

15-59225668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225668
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225668
    reference: chr 15
allele count: 1
allele frequency: 8.649920420732129e-6
allele num: 115608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.148G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68167C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.90G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-640G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.106G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.97G>A
  hgvsp: ENSP00000249736.7:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.97G>A
  hgvsp: ENSP00000453711.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.97G>A
  hgvsp: ENSP00000454000.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.97G>A
  hgvsp: ENSP00000453065.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.97G>A
  hgvsp: ENSP00000453179.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.132G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.97G>A
  hgvsp: ENSP00000453775.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.97G>A
  hgvsp: ENSP00000453371.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.97G>A
  hgvsp: ENSP00000453987.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.113G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.97G>A
  hgvsp: ENSP00000369887.2:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu33Lys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-59225678-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225678
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225678
    reference: chr 15
allele count: 1
allele frequency: 8.682816705739342e-6
allele num: 115170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.87T>G
  hgvsp: ENSP00000453371.1:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.87T>G
  hgvsp: ENSP00000453987.1:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.80T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68177A>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.87T>G
  hgvsp: ENSP00000453179.1:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-650T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.138T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.87T>G
  hgvsp: ENSP00000453711.1:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.87T>G
  hgvsp: ENSP00000454000.1:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.87T>G
  hgvsp: ENSP00000249736.7:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.103T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.87T>G
  hgvsp: ENSP00000453065.1:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.96T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.87T>G
  hgvsp: ENSP00000453775.1:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.122T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.87T>G
  hgvsp: ENSP00000369887.2:p.Asp29Glu
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp29Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-59225716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225716
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225716
    reference: chr 15
allele count: 1
allele frequency: 9.123255177447314e-6
allele num: 109610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.58G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.49G>A
  hgvsp: ENSP00000249736.7:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-688G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.49G>A
  hgvsp: ENSP00000453065.1:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.49G>A
  hgvsp: ENSP00000453371.1:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.65G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.49G>A
  hgvsp: ENSP00000454000.1:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.49G>A
  hgvsp: ENSP00000369887.2:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.49G>A
  hgvsp: ENSP00000453711.1:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.100G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.49G>A
  hgvsp: ENSP00000453775.1:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.49G>A
  hgvsp: ENSP00000453987.1:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.84G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.49G>A
  hgvsp: ENSP00000453179.1:p.Ala17Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.42G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68215C>T
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala17Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

15-59225719-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225719
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225719
    reference: chr 15
allele count: 1
allele frequency: 9.248127254231018e-6
allele num: 108130
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.46C>G
  hgvsp: ENSP00000369887.2:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.46C>G
  hgvsp: ENSP00000453987.1:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.46C>G
  hgvsp: ENSP00000454000.1:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68218G>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.39C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.81C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.46C>G
  hgvsp: ENSP00000249736.7:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.46C>G
  hgvsp: ENSP00000453065.1:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.46C>G
  hgvsp: ENSP00000453775.1:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.97C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.62C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.46C>G
  hgvsp: ENSP00000453179.1:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-691C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.46C>G
  hgvsp: ENSP00000453371.1:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.55C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.46C>G
  hgvsp: ENSP00000453711.1:p.Gln16Glu
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln16Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

15-59225721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225721
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225721
    reference: chr 15
allele count: 1
allele frequency: 9.484066767830045e-6
allele num: 105440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.44G>A
  hgvsp: ENSP00000453711.1:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.53G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.44G>A
  hgvsp: ENSP00000453775.1:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.37G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.44G>A
  hgvsp: ENSP00000453179.1:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.79G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68220C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.44G>A
  hgvsp: ENSP00000453371.1:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.44G>A
  hgvsp: ENSP00000249736.7:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.44G>A
  hgvsp: ENSP00000454000.1:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.44G>A
  hgvsp: ENSP00000453065.1:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.95G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-693G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.44G>A
  hgvsp: ENSP00000369887.2:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.60G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.44G>A
  hgvsp: ENSP00000453987.1:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly15Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/15-59225723-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225723
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225723
    reference: chr 15
allele count: 13
allele frequency: 1.266266656276786e-4
allele num: 102664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.42G>T
  hgvsp: ENST00000560682.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.42G>T
  hgvsp: ENST00000492526.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.42G>T
  hgvsp: ENST00000249736.7:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.35G>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.77G>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.42G>T
  hgvsp: ENST00000558486.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.42G>T
  hgvsp: ENST00000559261.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.42G>T
  hgvsp: ENST00000559305.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.42G>T
  hgvsp: ENST00000559880.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.51G>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.58G>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.93G>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68222C>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-695G>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.42G>T
  hgvsp: ENST00000557924.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.42G>T
  hgvsp: ENST00000380516.2:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11836
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Ser14Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

15-59225724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225724
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225724
    reference: chr 15
allele count: 2
allele frequency: 1.944314823456214e-5
allele num: 102864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.41C>T
  hgvsp: ENSP00000453775.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.41C>T
  hgvsp: ENSP00000453987.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.76C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.41C>T
  hgvsp: ENSP00000453179.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.41C>T
  hgvsp: ENSP00000249736.7:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.41C>T
  hgvsp: ENSP00000453711.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.41C>T
  hgvsp: ENSP00000453371.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68223G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.41C>T
  hgvsp: ENSP00000453065.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.41C>T
  hgvsp: ENSP00000454000.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.57C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.41C>T
  hgvsp: ENSP00000369887.2:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.34C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-696C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.92C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser14Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

15-59225728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225728
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225728
    reference: chr 15
allele count: 1
allele frequency: 9.645247786415633e-6
allele num: 103678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.37G>A
  hgvsp: ENSP00000453371.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.37G>A
  hgvsp: ENSP00000453711.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.37G>A
  hgvsp: ENSP00000369887.2:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.37G>A
  hgvsp: ENSP00000454000.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.88G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.53G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.37G>A
  hgvsp: ENSP00000453065.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.37G>A
  hgvsp: ENSP00000453987.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.37G>A
  hgvsp: ENSP00000249736.7:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68227C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.37G>A
  hgvsp: ENSP00000453775.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.37G>A
  hgvsp: ENSP00000453179.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-700G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.46G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.72G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30038
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala13Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ

15-59225729-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225729
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225729
    reference: chr 15
allele count: 1
allele frequency: 9.640784374216687e-6
allele num: 103726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.45C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.36C>G
  hgvsp: ENST00000249736.7:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-701C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.87C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.29C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.36C>G
  hgvsp: ENST00000492526.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.36C>G
  hgvsp: ENST00000557924.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.71C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.36C>G
  hgvsp: ENST00000560682.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.36C>G
  hgvsp: ENST00000559261.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.36C>G
  hgvsp: ENST00000559305.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.36C>G
  hgvsp: ENST00000558486.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.36C>G
  hgvsp: ENST00000559880.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.52C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68228G>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.36C>G
  hgvsp: ENST00000380516.2:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala12Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-59225733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225733
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225733
    reference: chr 15
allele count: 1
allele frequency: 9.645433851614646e-6
allele num: 103676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.32C>T
  hgvsp: ENSP00000453987.1:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.32C>T
  hgvsp: ENSP00000249736.7:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.32C>T
  hgvsp: ENSP00000369887.2:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.41C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68232G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.48C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-705C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.32C>T
  hgvsp: ENSP00000453065.1:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.32C>T
  hgvsp: ENSP00000453775.1:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.32C>T
  hgvsp: ENSP00000453371.1:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.25C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.32C>T
  hgvsp: ENSP00000453711.1:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.32C>T
  hgvsp: ENSP00000454000.1:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.32C>T
  hgvsp: ENSP00000453179.1:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.67C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.83C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser11Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

15-59225736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225736
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225736
    reference: chr 15
allele count: 5
allele frequency: 4.883861767176542e-5
allele num: 102378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.22C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.29C>T
  hgvsp: ENSP00000454000.1:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.64C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.29C>T
  hgvsp: ENSP00000453775.1:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.29C>T
  hgvsp: ENSP00000453711.1:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.29C>T
  hgvsp: ENSP00000453179.1:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.29C>T
  hgvsp: ENSP00000249736.7:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.29C>T
  hgvsp: ENSP00000453987.1:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68235G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.80C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.45C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-708C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.29C>T
  hgvsp: ENSP00000453065.1:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.29C>T
  hgvsp: ENSP00000453371.1:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.38C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.29C>T
  hgvsp: ENSP00000369887.2:p.Ala10Val
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala10Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

15-59225736-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225736
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225736
    reference: chr 15
allele count: 1
allele frequency: 9.767723534353084e-6
allele num: 102378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-708C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.29C>A
  hgvsp: ENSP00000453065.1:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.29C>A
  hgvsp: ENSP00000453371.1:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.29C>A
  hgvsp: ENSP00000453711.1:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.29C>A
  hgvsp: ENSP00000453987.1:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68235G>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.22C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.29C>A
  hgvsp: ENSP00000453775.1:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.29C>A
  hgvsp: ENSP00000453179.1:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.29C>A
  hgvsp: ENSP00000249736.7:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.80C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.29C>A
  hgvsp: ENSP00000369887.2:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.45C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.29C>A
  hgvsp: ENSP00000454000.1:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.64C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.38C>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala10Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-59225744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225744
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225744
    reference: chr 15
allele count: 3
allele frequency: 3.045066991473813e-5
allele num: 98520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.21G>A
  hgvsp: ENST00000559880.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.21G>A
  hgvsp: ENST00000249736.7:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.21G>A
  hgvsp: ENST00000560682.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.21G>A
  hgvsp: ENST00000559305.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.21G>A
  hgvsp: ENST00000558486.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.37G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.21G>A
  hgvsp: ENST00000380516.2:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.21G>A
  hgvsp: ENST00000492526.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.56G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.21G>A
  hgvsp: ENST00000559261.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.21G>A
  hgvsp: ENST00000557924.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-716G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68243C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.72G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000557950
  gene symbol: SLTM
  hgvsc: ENST00000557950.1:n.14G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.30G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala7Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-59225765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225765
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225765
    reference: chr 15
allele count: 4
allele frequency: 4.711647191858274e-5
allele num: 84896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.16G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.9G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.51G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-737G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.35G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68264C>T
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

15-59225765-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225765
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225765
    reference: chr 15
allele count: 1
allele frequency: 1.177911797964568e-5
allele num: 84896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.51G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.16G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-737G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68264C>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.35G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.9G>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-59225772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225772
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225772
    reference: chr 15
allele count: 3
allele frequency: 3.706174486694834e-5
allele num: 80946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.28C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000484498
  gene symbol: SLTM
  hgvsc: ENST00000484498.1:n.2C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453179
  ensembl transcript: ENST00000558486
  gene symbol: SLTM
  hgvsc: ENST00000558486.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.9C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68271G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-744C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.44C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

15-59225774-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225774
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225774
    reference: chr 15
allele count: 1
allele frequency: 1.273690646015896e-5
allele num: 78512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-10C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.-10C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-746C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.-10C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.7C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453371
  ensembl transcript: ENST00000559305
  gene symbol: SLTM
  hgvsc: ENST00000559305.1:c.-10C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68273G>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.26C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-10C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.42C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-10C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453987
  ensembl transcript: ENST00000560682
  gene symbol: SLTM
  hgvsc: ENST00000560682.1:c.-10C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-10C>G
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-59225776-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225776
    reference: chr 15
allele count: 1
allele frequency: 1.274957288930821e-5
allele num: 78434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.40T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000560012
  gene symbol: SLTM
  hgvsc: ENST00000560012.1:n.5T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000249736
  ensembl transcript: ENST00000249736
  gene symbol: SLTM
  hgvsc: ENST00000249736.7:c.-12T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453711
  ensembl transcript: ENST00000492526
  gene symbol: SLTM
  hgvsc: ENST00000492526.1:c.-12T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-12T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-12T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68275A>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-748T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-12T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.24T>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-12T>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

15-59225782-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225782
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225782
    reference: chr 15
allele count: 1
allele frequency: 1.350329480393216e-5
allele num: 74056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.34G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68281C>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-754G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.18G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-18G>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

15-59225785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225785
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225785
    reference: chr 15
allele count: 1
allele frequency: 1.404731134460864e-5
allele num: 71188
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-21G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.15G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.31G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68284C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-757G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17611
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4015
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-59225787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225787
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225787
    reference: chr 15
allele count: 2
allele frequency: 2.88358949219989e-5
allele num: 69358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.29C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-23C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.13C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-759C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68286G>A
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17873
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

15-59225787-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225787
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225787
    reference: chr 15
allele count: 3
allele frequency: 4.325384238299836e-5
allele num: 69358
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-23C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-23C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-23C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68286G>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.29C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-759C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.13C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-23C>G
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23895
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-59225788-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225788
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225788
    reference: chr 15
allele count: 1
allele frequency: 1.436946775491436e-5
allele num: 69592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.28T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-760T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.12T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-24T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-24T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-24T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68287A>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-24T>G
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23913
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4477
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7473
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

15-59225789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225789
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225789
    reference: chr 15
allele count: 1
allele frequency: 1.483987771940759e-5
allele num: 67386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-761C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.11C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.27C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-25C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68288G>A
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

15-59225790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225790
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225790
    reference: chr 15
allele count: 2
allele frequency: 2.9708853238265e-5
allele num: 67320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-26C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.26C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453065
  ensembl transcript: ENST00000559880
  gene symbol: SLTM
  hgvsc: ENST00000559880.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-762C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68289G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.10C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

15-59225794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225794
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225794
    reference: chr 15
allele count: 13
allele frequency: 2.012197009565675e-4
allele num: 64606
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.6G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68293C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.22G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-766G>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18386
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23744
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4598
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30077
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

15-59225795-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225795
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225795
    reference: chr 15
allele count: 2
allele frequency: 3.129400719762166e-5
allele num: 63910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68294G>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.5C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-767C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-31C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-31C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-31C>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.21C>G
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23643
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9729
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-59225798-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225798
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225798
    reference: chr 15
allele count: 3
allele frequency: 4.825012866700978e-5
allele num: 62176
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000480144
  gene symbol: SLTM
  hgvsc: ENST00000480144.1:n.2A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000454000
  ensembl transcript: ENST00000557924
  gene symbol: SLTM
  hgvsc: ENST00000557924.1:c.-34A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000453775
  ensembl transcript: ENST00000559261
  gene symbol: SLTM
  hgvsc: ENST00000559261.1:c.-34A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000439271
  ensembl transcript: ENST00000536328
  gene symbol: SLTM
  hgvsc: ENST00000536328.1:c.-770A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-34A>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68297T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.18A>C
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23087
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10505
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

15-59225800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225800
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225800
    reference: chr 15
allele count: 1
allele frequency: 1.701664227614607e-5
allele num: 58766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.16C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68299G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-36C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5079
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

15-59225802-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225802
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225802
    reference: chr 15
allele count: 2
allele frequency: 3.486871927194114e-5
allele num: 57358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.14G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-38G>C
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68301C>G
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19889
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21468
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11639
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-59225803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225803
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225803
    reference: chr 15
allele count: 1
allele frequency: 1.75364758698092e-5
allele num: 57024
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68302T>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.13A>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-39A>G
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5054
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11757
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

15-59225804-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225804
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225804
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 54152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68303G>A
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-40C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.12C>T
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21162
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22932
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-59225806-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225806
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225806
    reference: chr 15
allele count: 1
allele frequency: 1.875398522185965e-5
allele num: 53322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68305A>C
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.10T>G
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-42T>G
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1275
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 514
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4451
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genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/15-59225810-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225810
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225810
    reference: chr 15
allele count: 6
allele frequency: 1.239003840911907e-4
allele num: 48426
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-46G>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.6G>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68309C>A
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17823
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23411
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 4911
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 5530
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6004
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 591
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

15-59225811-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225811
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225811
    reference: chr 15
allele count: 2
allele frequency: 4.29885650416989e-5
allele num: 46524
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-47C>A
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68310G>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.5C>A
  variant of: http://identifiers.org/hgnc/20709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 277
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

15-59225814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59225814
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59225814
    reference: chr 15
allele count: 5
allele frequency: 1.135228407955681e-4
allele num: 44044
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137776
  ensembl protein: ENSP00000369887
  ensembl transcript: ENST00000380516
  gene symbol: SLTM
  hgvsc: ENST00000380516.2:c.-50C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137776
  ensembl transcript: ENST00000474342
  gene symbol: SLTM
  hgvsc: ENST00000474342.1:n.2C>T
  variant of: http://identifiers.org/hgnc/20709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-20+68313G>A
  variant of: http://identifiers.org/hgnc/17384
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16534
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-59296282-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59296282
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59296282
    reference: chr 15
allele count: 1
allele frequency: 2.54841997961264e-4
allele num: 3924
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452732
  ensembl transcript: ENST00000557998
  gene symbol: RNF111
  hgvsc: ENST00000557998.1:c.-20+15678T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000453872
  ensembl transcript: ENST00000559209
  gene symbol: RNF111
  hgvsc: ENST00000559209.1:c.-20+16015T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452842
  ensembl transcript: ENST00000559160
  gene symbol: RNF111
  hgvsc: ENST00000559160.1:c.-42T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-19-26721T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000393641
  ensembl transcript: ENST00000434298
  gene symbol: RNF111
  hgvsc: ENST00000434298.1:c.-20+16015T>G
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000288199
  ensembl transcript: ENST00000348370
  gene symbol: RNF111
  hgvsc: ENST00000348370.4:c.-20+16015T>G
  variant of: http://identifiers.org/hgnc/17384
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 372
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

15-59296288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59296288
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59296288
    reference: chr 15
allele count: 2
allele frequency: 4.99001996007984e-4
allele num: 4008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000393641
  ensembl transcript: ENST00000434298
  gene symbol: RNF111
  hgvsc: ENST00000434298.1:c.-20+16021C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452732
  ensembl transcript: ENST00000557998
  gene symbol: RNF111
  hgvsc: ENST00000557998.1:c.-20+15684C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000288199
  ensembl transcript: ENST00000348370
  gene symbol: RNF111
  hgvsc: ENST00000348370.4:c.-20+16021C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000453872
  ensembl transcript: ENST00000559209
  gene symbol: RNF111
  hgvsc: ENST00000559209.1:c.-20+16021C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452842
  ensembl transcript: ENST00000559160
  gene symbol: RNF111
  hgvsc: ENST00000559160.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-19-26715C>T
  variant of: http://identifiers.org/hgnc/17384
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

15-59296316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 59296316
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 59296316
    reference: chr 15
allele count: 1
allele frequency: 1.653439153439153e-4
allele num: 6048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452732
  ensembl transcript: ENST00000557998
  gene symbol: RNF111
  hgvsc: ENST00000557998.1:c.-20+15712C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452842
  ensembl transcript: ENST00000559160
  gene symbol: RNF111
  hgvsc: ENST00000559160.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000393641
  ensembl transcript: ENST00000434298
  gene symbol: RNF111
  hgvsc: ENST00000434298.1:c.-20+16049C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000452919
  ensembl transcript: ENST00000559757
  gene symbol: RNF111
  hgvsc: ENST00000559757.1:c.-19-26687C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000288199
  ensembl transcript: ENST00000348370
  gene symbol: RNF111
  hgvsc: ENST00000348370.4:c.-20+16049C>T
  variant of: http://identifiers.org/hgnc/17384
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157450
  ensembl protein: ENSP00000453872
  ensembl transcript: ENST00000559209
  gene symbol: RNF111
  hgvsc: ENST00000559209.1:c.-20+16049C>T
  variant of: http://identifiers.org/hgnc/17384
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20601
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2869
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8312
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5916
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8596
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3672
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7707
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.35685210312076e-4
allele num: 7370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4394
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.55077e5

VQSLOD
type: SiteQuality
SIO_000300: -8.207e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.013e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e-1

QD
type: SiteQuality
SIO_000300: 1.885e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14629
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3168
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8074
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12289
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10715
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3872
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4669
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
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variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.89848348992242e-5
allele num: 51302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.96227e5

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 4.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeDepth
all individuals: 20767
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 0
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variant carriers: 0

GenotypeDepth
all individuals: 17194
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variant carriers: 0

GenotypeDepth
all individuals: 3641
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 220
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 415
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variant carriers: 0

GenotypeQuality
all individuals: 1050
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variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
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variant carriers: 0

GenotypeQuality
all individuals: 4431
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variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5827
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 311
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variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7605
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.452643811737362e-4
allele num: 6884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.729e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

QD
type: SiteQuality
SIO_000300: 1.537e1

DP
type: SiteQuality
SIO_000300: 9.48601e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.264e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 911
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variant carriers: 0

GenotypeDepth
all individuals: 13798
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3126
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variant carriers: 0

GenotypeDepth
all individuals: 177
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variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
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variant carriers: 0

GenotypeQuality
all individuals: 671
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variant carriers: 0

GenotypeQuality
all individuals: 26775
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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DP
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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Other
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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Other
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African
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East Asian
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DP
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MQ
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Other
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European (Finnish)
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeDepth
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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South Asian
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Latino
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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South Asian
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Latino
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.40901343151292e-5
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DP
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele count: 0
allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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Other
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MQ
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FS
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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East Asian
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Other
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FS
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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QD
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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East Asian
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Other
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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allele num: 10846
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South Asian
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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African
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Other
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European (Finnish)
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FS
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MQRankSum
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 62846
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Other
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East Asian
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DP
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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Latino
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DP
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MQRankSum
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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South Asian
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Other
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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Latino
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South Asian
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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FS
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InbreedingCoeff
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VQSLOD
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DP
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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South Asian
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African
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Other
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InbreedingCoeff
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FS
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DP
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MQRankSum
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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FS
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MQRankSum
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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African
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South Asian
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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Other
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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MQ
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 63608
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South Asian
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East Asian
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African
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European (Finnish)
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Other
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Latino
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MQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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South Asian
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European (Finnish)
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Other
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FS
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BaseQRankSum
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MQ
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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South Asian
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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VQSLOD
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SIO_000300: -1.236e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720755755928004e-5
allele num: 58114
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
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SIO_000300: -1.373e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.635e0

FS
type: SiteQuality
SIO_000300: 1.098e0

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.213299e6

VQSLOD
type: SiteQuality
SIO_000300: -9.697e-1

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15464
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 2.649006622516556e-4
allele num: 7550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.95056211653722e-4
allele num: 56394
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 1.203322e6

QD
type: SiteQuality
SIO_000300: 1.032e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.858044164037855e-5
allele num: 10144
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.769911504424779e-5
allele num: 56500
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.945e0

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.99e-1

InbreedingCoeff
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SIO_000300: -6.3e-3

FS
type: SiteQuality
SIO_000300: 8.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.266e1

DP
type: SiteQuality
SIO_000300: 1.201291e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 57066
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
type: SiteQuality
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.752049898381106e-5
allele num: 57076
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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QD
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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Other
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African
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European (Finnish)
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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African
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South Asian
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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MQRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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African
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East Asian
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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African
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East Asian
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DP
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MQ
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QD
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 2.828854314002829e-4
allele num: 7070
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.25407988459111e-5
allele num: 44364
num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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MQ
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.457301078402798e-4
allele num: 6862
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 3194
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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SIO_000300: 1.105e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 7.589556769884639e-5
allele num: 13176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42934
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 7.91827e5

MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -1.72e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -1.16e-2

VQSLOD
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SIO_000300: -2.1e-2

QD
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ClippingRankSum
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SIO_000300: -1.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5712
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.471454698235381e-5
allele num: 40462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.218e0

MQRankSum
type: SiteQuality
SIO_000300: -1.263e0

DP
type: SiteQuality
SIO_000300: 7.33011e5

QD
type: SiteQuality
SIO_000300: 1.877e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38872
num of homozygotes: 0

South Asian
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African
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allele frequency: 1.997602876548142e-4
allele num: 5006
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.871e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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DP
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SIO_000300: 6.98295e5

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 6.85e0

MQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.247e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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Other
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East Asian
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South Asian
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
type: SiteQuality
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MQ
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FS
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 460
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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South Asian
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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QD
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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African
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
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ClippingRankSum
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DP
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QD
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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African
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Other
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East Asian
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MQ
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MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-1

QD
type: SiteQuality
SIO_000300: 8.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 6.52726e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.842e-1

GenotypeQuality
all individuals: 30789
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4916
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8370
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.944012441679627e-4
allele num: 5144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36750
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.29324929507381e-5
allele num: 12058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4686
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 6.5179e5

FS
type: SiteQuality
SIO_000300: 2.012e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.388e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.912e-1

GenotypeQuality
all individuals: 708
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4569
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35240
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 2.899197145405887e-3
allele num: 4484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11792
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.482e1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 3.167e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

DP
type: SiteQuality
SIO_000300: 6.28044e5

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.270663033605813e-4
allele num: 4404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.872902780969892e-5
allele num: 34808
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.061e0

DP
type: SiteQuality
SIO_000300: 6.19029e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.031e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 28788
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3012
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.86472430707405e-5
allele num: 33842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2298
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.99938e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4090
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.890469416785207e-5
allele num: 11248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31920
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.029e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.943e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -1.196e-1

DP
type: SiteQuality
SIO_000300: 5.76254e5

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.935834155972359e-4
allele num: 2026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.212748184797276e-5
allele num: 31126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3986
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.55e-2

DP
type: SiteQuality
SIO_000300: 5.68887e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.136e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

QD
type: SiteQuality
SIO_000300: 1.319e1

GenotypeQuality
all individuals: 1648
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.234989648033127e-5
allele num: 30912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.63809e5

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.461e0

QD
type: SiteQuality
SIO_000300: 3.93e0

VQSLOD
type: SiteQuality
SIO_000300: -3.591e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.55e0

VQSLOD
type: SiteQuality
SIO_000300: -1.697e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.371e0

DP
type: SiteQuality
SIO_000300: 5.508e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

FS
type: SiteQuality
SIO_000300: 4.301e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.473910928923782e-5
allele num: 28786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4136
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

DP
type: SiteQuality
SIO_000300: 5.46039e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

GenotypeQuality
all individuals: 78
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.083958629081322e-4
allele num: 9862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

FS
type: SiteQuality
SIO_000300: 2.122e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

QD
type: SiteQuality
SIO_000300: 1.028e1

DP
type: SiteQuality
SIO_000300: 5.31664e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.06654267410622e-4
allele num: 9678
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.163e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.27065e5

QD
type: SiteQuality
SIO_000300: 1.467e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeQuality
all individuals: 316
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 8.498583569405099e-4
allele num: 3530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.494011721736176e-5
allele num: 23546
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

FS
type: SiteQuality
SIO_000300: 3.093e0

QD
type: SiteQuality
SIO_000300: 3.393e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.22655e5

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 516
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.855050115651503e-4
allele num: 2594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.1682e4

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-2

QD
type: SiteQuality
SIO_000300: 7.71e0

VQSLOD
type: SiteQuality
SIO_000300: -1.613e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
all individuals: 248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.127659574468085e-2
allele num: 94
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 2.629e0

DP
type: SiteQuality
SIO_000300: 5.3408e4

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeQuality
all individuals: 57
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.4330900243309e-4
allele num: 4110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0