16-3613067-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613067
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613067
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 18518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1817T>C
  hgvsp: ENSP00000323897.8:p.Leu606Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2282T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.2012T>C
  hgvsp: ENSP00000474358.1:p.Leu671Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2352T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1871T>C
  hgvsp: ENSP00000301749.7:p.Leu624Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1871T>C
  hgvsp: ENSP00000352039.5:p.Leu624Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.2012T>C
  hgvsp: ENSP00000414415.2:p.Leu671Pro
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26590
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21906
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu671Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-3613078-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613078
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613078
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 19792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2341G>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.2001G>C
  hgvsp: ENST00000448023.2:c.2001G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.2001G>C
  hgvsp: ENST00000603507.1:c.2001G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2271G>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1806G>C
  hgvsp: ENST00000324659.8:c.1806G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1860G>C
  hgvsp: ENST00000359128.5:c.1860G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1860G>C
  hgvsp: ENST00000301749.7:c.1860G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29287
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24982
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19062
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu667Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

16-3613080-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613080
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613080
    reference: chr 16
allele count: 1
allele frequency: 4.989522003792037e-5
allele num: 20042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1858C>A
  hgvsp: ENSP00000352039.5:p.Leu620Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1858C>A
  hgvsp: ENSP00000301749.7:p.Leu620Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1804C>A
  hgvsp: ENSP00000323897.8:p.Leu602Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1999C>A
  hgvsp: ENSP00000414415.2:p.Leu667Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2269C>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1999C>A
  hgvsp: ENSP00000474358.1:p.Leu667Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2339C>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19092
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29806
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu667Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

16-3613083-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613083
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613083
    reference: chr 16
allele count: 1
allele frequency: 4.8828125e-5
allele num: 20480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2336A>G
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1996A>G
  hgvsp: ENSP00000474358.1:p.Asn666Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1801A>G
  hgvsp: ENSP00000323897.8:p.Asn601Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2266A>G
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1996A>G
  hgvsp: ENSP00000414415.2:p.Asn666Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1855A>G
  hgvsp: ENSP00000352039.5:p.Asn619Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1855A>G
  hgvsp: ENSP00000301749.7:p.Asn619Asp
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30412
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26056
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17761
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn666Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

16-3613090-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613090
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613090
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 21752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1989G>C
  hgvsp: ENSP00000474358.1:p.Gln663His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1989G>C
  hgvsp: ENSP00000414415.2:p.Gln663His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1794G>C
  hgvsp: ENSP00000323897.8:p.Gln598His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1848G>C
  hgvsp: ENSP00000301749.7:p.Gln616His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1848G>C
  hgvsp: ENSP00000352039.5:p.Gln616His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2329G>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2259G>C
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31823
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15908
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28619
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln663His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

16-3613091-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613091
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613091
    reference: chr 16
allele count: 1
allele frequency: 4.552490212146044e-5
allele num: 21966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1847A>G
  hgvsp: ENSP00000301749.7:p.Gln616Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1988A>G
  hgvsp: ENSP00000474358.1:p.Gln663Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1793A>G
  hgvsp: ENSP00000323897.8:p.Gln598Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2258A>G
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2328A>G
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1988A>G
  hgvsp: ENSP00000414415.2:p.Gln663Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1847A>G
  hgvsp: ENSP00000352039.5:p.Gln616Arg
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29024
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln663Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

16-3613093-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613093
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613093
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 22298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1791C>G
  hgvsp: ENST00000324659.8:c.1791C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1845C>G
  hgvsp: ENST00000359128.5:c.1845C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2326C>G
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1845C>G
  hgvsp: ENST00000301749.7:c.1845C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1986C>G
  hgvsp: ENST00000603507.1:c.1986C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2256C>G
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1986C>G
  hgvsp: ENST00000448023.2:c.1986C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15723
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28982
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala662Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-3613101-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613101
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613101
    reference: chr 16
allele count: 1
allele frequency: 4.178156597309267e-5
allele num: 23934
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1978G>T
  hgvsp: ENSP00000414415.2:p.Ala660Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1837G>T
  hgvsp: ENSP00000301749.7:p.Ala613Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1978G>T
  hgvsp: ENSP00000474358.1:p.Ala660Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2248G>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1783G>T
  hgvsp: ENSP00000323897.8:p.Ala595Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2318G>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1837G>T
  hgvsp: ENSP00000352039.5:p.Ala613Ser
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33228
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30025
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala660Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

16-3613102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613102
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613102
    reference: chr 16
allele count: 1
allele frequency: 4.097017371353655e-5
allele num: 24408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2317C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1836C>T
  hgvsp: ENST00000359128.5:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1977C>T
  hgvsp: ENST00000448023.2:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1782C>T
  hgvsp: ENST00000324659.8:c.1782C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2247C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1977C>T
  hgvsp: ENST00000603507.1:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1836C>T
  hgvsp: ENST00000301749.7:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33499
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13074
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp659Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

16-3613104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613104
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613104
    reference: chr 16
allele count: 2
allele frequency: 8.064516129032258e-5
allele num: 24800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2245G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1834G>A
  hgvsp: ENSP00000301749.7:p.Asp612Asn
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1975G>A
  hgvsp: ENSP00000474358.1:p.Asp659Asn
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2315G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1975G>A
  hgvsp: ENSP00000414415.2:p.Asp659Asn
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1834G>A
  hgvsp: ENSP00000352039.5:p.Asp612Asn
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1780G>A
  hgvsp: ENSP00000323897.8:p.Asp594Asn
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33663
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13013
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp659Asn
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-3613105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613105
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613105
    reference: chr 16
allele count: 8
allele frequency: 3.155320659462018e-4
allele num: 25354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1833C>T
  hgvsp: ENST00000359128.5:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1974C>T
  hgvsp: ENST00000603507.1:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2244C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1974C>T
  hgvsp: ENST00000448023.2:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1779C>T
  hgvsp: ENST00000324659.8:c.1779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1833C>T
  hgvsp: ENST00000301749.7:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2314C>T
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33783
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12642
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ser658Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

16-3613114-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613114
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613114
    reference: chr 16
allele count: 1
allele frequency: 3.629764065335753e-5
allele num: 27550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1965G>A
  hgvsp: ENST00000603507.1:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2235G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1824G>A
  hgvsp: ENST00000359128.5:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1770G>A
  hgvsp: ENST00000324659.8:c.1770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2305G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1965G>A
  hgvsp: ENST00000448023.2:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1824G>A
  hgvsp: ENST00000301749.7:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu655Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS

16-3613115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613115
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613115
    reference: chr 16
allele count: 1
allele frequency: 3.576282097131822e-5
allele num: 27962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2304T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1769T>C
  hgvsp: ENSP00000323897.8:p.Leu590Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1964T>C
  hgvsp: ENSP00000414415.2:p.Leu655Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1964T>C
  hgvsp: ENSP00000474358.1:p.Leu655Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2234T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1823T>C
  hgvsp: ENSP00000352039.5:p.Leu608Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1823T>C
  hgvsp: ENSP00000301749.7:p.Leu608Pro
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34227
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6772
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu655Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

16-3613126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613126
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613126
    reference: chr 16
allele count: 16052
allele frequency: 3.5828757644748e-1
allele num: 44802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2223G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1953G>A
  hgvsp: ENST00000448023.2:c.1953G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2293G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1812G>A
  hgvsp: ENST00000359128.5:c.1812G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1812G>A
  hgvsp: ENST00000301749.7:c.1812G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1758G>A
  hgvsp: ENST00000324659.8:c.1758G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1953G>A
  hgvsp: ENST00000603507.1:c.1953G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.25e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27450
  bin: 7.5e0
  variant carriers: 5400
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.75e1
  variant carriers: 686
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 2.25e1
  variant carriers: 1832
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 1.75e1
  variant carriers: 4168
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.5e0
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 12214
  bin: 1.25e1
  variant carriers: 7199
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 317
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 2.5e0
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.25e1
  variant carriers: 313
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 6.25e1
  variant carriers: 574
genotype quality: GenotypeQuality
  all individuals: 19627
  bin: 2.25e1
  variant carriers: 551
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 4.75e1
  variant carriers: 493
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.75e1
  variant carriers: 511
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 2.75e1
  variant carriers: 456
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 1.75e1
  variant carriers: 525
hgvs: p.Leu651Leu
num of homozygotes: 1865
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

16-3613128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613128
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613128
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 44494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2291C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1810C>T
  hgvsp: ENST00000301749.7:c.1810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1756C>T
  hgvsp: ENST00000324659.8:c.1756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1951C>T
  hgvsp: ENST00000603507.1:c.1951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2221C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1810C>T
  hgvsp: ENST00000359128.5:c.1810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1951C>T
  hgvsp: ENST00000448023.2:c.1951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28239
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8571
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu651Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-3613134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613134
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613134
    reference: chr 16
allele count: 2
allele frequency: 4.459109961651654e-5
allele num: 44852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2285G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2215G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1804G>A
  hgvsp: ENSP00000301749.7:p.Ala602Thr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1945G>A
  hgvsp: ENSP00000474358.1:p.Ala649Thr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1945G>A
  hgvsp: ENSP00000414415.2:p.Ala649Thr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1750G>A
  hgvsp: ENSP00000323897.8:p.Ala584Thr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1804G>A
  hgvsp: ENSP00000352039.5:p.Ala602Thr
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12589
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28276
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5075
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala649Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

16-3613135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613135
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613135
    reference: chr 16
allele count: 1
allele frequency: 2.195196909162752e-5
allele num: 45554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2214C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2284C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1803C>T
  hgvsp: ENST00000359128.5:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1944C>T
  hgvsp: ENST00000603507.1:c.1944C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1803C>T
  hgvsp: ENST00000301749.7:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1944C>T
  hgvsp: ENST00000448023.2:c.1944C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1749C>T
  hgvsp: ENST00000324659.8:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8021
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5123
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Arg648Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

16-3613136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613136
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613136
    reference: chr 16
allele count: 195
allele frequency: 4.25207152202355e-3
allele num: 45860
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1943G>A
  hgvsp: ENSP00000414415.2:p.Arg648His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2213G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2283G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1802G>A
  hgvsp: ENSP00000301749.7:p.Arg601His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1802G>A
  hgvsp: ENSP00000352039.5:p.Arg601His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1943G>A
  hgvsp: ENSP00000474358.1:p.Arg648His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1748G>A
  hgvsp: ENSP00000323897.8:p.Arg583His
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 1.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 8019
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28255
  bin: 7.5e0
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7904
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 26046
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5114
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.5e0
  variant carriers: 3
hgvs: p.Arg648His
num of homozygotes: 2
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

16-3613137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613137
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613137
    reference: chr 16
allele count: 5
allele frequency: 1.082766685434623e-4
allele num: 46178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1747C>T
  hgvsp: ENSP00000323897.8:p.Arg583Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1801C>T
  hgvsp: ENSP00000301749.7:p.Arg601Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1942C>T
  hgvsp: ENSP00000474358.1:p.Arg648Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1942C>T
  hgvsp: ENSP00000414415.2:p.Arg648Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1801C>T
  hgvsp: ENSP00000352039.5:p.Arg601Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2212C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2282C>T
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28280
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12812
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5176
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26358
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7804
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg648Cys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-3613141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613141
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613141
    reference: chr 16
allele count: 30
allele frequency: 6.427010583144094e-4
allele num: 46678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1797G>A
  hgvsp: ENST00000359128.5:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1938G>A
  hgvsp: ENST00000448023.2:c.1938G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1743G>A
  hgvsp: ENST00000324659.8:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1797G>A
  hgvsp: ENST00000301749.7:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1938G>A
  hgvsp: ENST00000603507.1:c.1938G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2208G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2278G>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7497
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12979
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 28176
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25409
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala646Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-3613142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613142
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613142
    reference: chr 16
allele count: 3
allele frequency: 6.344909267797471e-5
allele num: 47282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1796C>T
  hgvsp: ENSP00000352039.5:p.Ala599Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1796C>T
  hgvsp: ENSP00000301749.7:p.Ala599Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2207C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1937C>T
  hgvsp: ENSP00000414415.2:p.Ala646Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1742C>T
  hgvsp: ENSP00000323897.8:p.Ala581Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1937C>T
  hgvsp: ENSP00000474358.1:p.Ala646Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2277C>T
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13025
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28188
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7279
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala646Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

16-3613143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613143
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613143
    reference: chr 16
allele count: 1
allele frequency: 2.114880297775146e-5
allele num: 47284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1795G>A
  hgvsp: ENSP00000301749.7:p.Ala599Thr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1741G>A
  hgvsp: ENSP00000323897.8:p.Ala581Thr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2276G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1795G>A
  hgvsp: ENSP00000352039.5:p.Ala599Thr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1936G>A
  hgvsp: ENSP00000414415.2:p.Ala646Thr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2206G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1936G>A
  hgvsp: ENSP00000474358.1:p.Ala646Thr
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13096
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala646Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ

16-3613144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613144
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613144
    reference: chr 16
allele count: 3
allele frequency: 6.259650294203564e-5
allele num: 47926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1740C>T
  hgvsp: ENST00000324659.8:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2275C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2205C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1935C>T
  hgvsp: ENST00000448023.2:c.1935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1794C>T
  hgvsp: ENST00000359128.5:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1935C>T
  hgvsp: ENST00000603507.1:c.1935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1794C>T
  hgvsp: ENST00000301749.7:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28079
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13149
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7062
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro645Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

16-3613147-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613147
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613147
    reference: chr 16
allele count: 1
allele frequency: 2.033594989221947e-5
allele num: 49174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2272T>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1932T>A
  hgvsp: ENST00000603507.1:c.1932T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1791T>A
  hgvsp: ENST00000359128.5:c.1791T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1932T>A
  hgvsp: ENST00000448023.2:c.1932T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2202T>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1737T>A
  hgvsp: ENST00000324659.8:c.1737T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1791T>A
  hgvsp: ENST00000301749.7:c.1791T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly644Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

16-3613148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613148
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613148
    reference: chr 16
allele count: 1
allele frequency: 2.027410591192928e-5
allele num: 49324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1790G>A
  hgvsp: ENSP00000301749.7:p.Gly597Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1931G>A
  hgvsp: ENSP00000474358.1:p.Gly644Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1931G>A
  hgvsp: ENSP00000414415.2:p.Gly644Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2201G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1736G>A
  hgvsp: ENSP00000323897.8:p.Gly579Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1790G>A
  hgvsp: ENSP00000352039.5:p.Gly597Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2271G>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4365
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly644Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

16-3613149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613149
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613149
    reference: chr 16
allele count: 1
allele frequency: 2.015072744126063e-5
allele num: 49626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1789G>A
  hgvsp: ENSP00000352039.5:p.Gly597Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2270G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2200G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1735G>A
  hgvsp: ENSP00000323897.8:p.Gly579Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1789G>A
  hgvsp: ENSP00000301749.7:p.Gly597Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1930G>A
  hgvsp: ENSP00000474358.1:p.Gly644Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1930G>A
  hgvsp: ENSP00000414415.2:p.Gly644Ser
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly644Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

16-3613150-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613150
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613150
    reference: chr 16
allele count: 49384
allele frequency: 6.908592372905067e-1
allele num: 71482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1788T>C
  hgvsp: ENST00000301749.7:c.1788T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2269T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1734T>C
  hgvsp: ENST00000324659.8:c.1734T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1788T>C
  hgvsp: ENST00000359128.5:c.1788T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1929T>C
  hgvsp: ENST00000448023.2:c.1929T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1929T>C
  hgvsp: ENST00000603507.1:c.1929T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2199T>C
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 2.5e0
  variant carriers: 1281
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 17274
  bin: 1.25e1
  variant carriers: 15439
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.75e1
  variant carriers: 1933
genotype depth: GenotypeDepth
  all individuals: 11074
  bin: 1.75e1
  variant carriers: 10499
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.25e1
  variant carriers: 775
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 17755
  bin: 7.5e0
  variant carriers: 10435
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 2.25e1
  variant carriers: 4860
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 1615
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 928
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 8.25e1
  variant carriers: 1113
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 2.5e0
  variant carriers: 292
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 3.75e1
  variant carriers: 2922
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.75e1
  variant carriers: 967
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 7.25e1
  variant carriers: 739
genotype quality: GenotypeQuality
  all individuals: 16661
  bin: 9.75e1
  variant carriers: 16661
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 989
hgvs: p.Thr643Thr
num of homozygotes: 16045
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum

16-3613152-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613152
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613152
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 63966
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1927A>T
  hgvsp: ENSP00000414415.2:p.Thr643Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1732A>T
  hgvsp: ENSP00000323897.8:p.Thr578Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2267A>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1786A>T
  hgvsp: ENSP00000301749.7:p.Thr596Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1786A>T
  hgvsp: ENSP00000352039.5:p.Thr596Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1927A>T
  hgvsp: ENSP00000474358.1:p.Thr643Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2197A>T
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21330
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6063
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr643Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

16-3613156-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613156
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613156
    reference: chr 16
allele count: 1
allele frequency: 1.578731331502005e-5
allele num: 63342
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2263G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1728G>A
  hgvsp: ENST00000324659.8:c.1728G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2193G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1782G>A
  hgvsp: ENST00000359128.5:c.1782G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1923G>A
  hgvsp: ENST00000448023.2:c.1923G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1782G>A
  hgvsp: ENST00000301749.7:c.1782G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1923G>A
  hgvsp: ENST00000603507.1:c.1923G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21384
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5800
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg641Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS

16-3613158-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613158
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613158
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 63510
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1921A>C
  hgvsp: ENST00000448023.2:c.1921A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1726A>C
  hgvsp: ENST00000324659.8:c.1726A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2191A>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1921A>C
  hgvsp: ENST00000603507.1:c.1921A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1780A>C
  hgvsp: ENST00000301749.7:c.1780A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1780A>C
  hgvsp: ENST00000359128.5:c.1780A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2261A>C
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21466
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6061
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22254
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg641Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

16-3613163-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613163
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613163
    reference: chr 16
allele count: 2
allele frequency: 3.17047652262135e-5
allele num: 63082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1775T>C
  hgvsp: ENSP00000301749.7:p.Leu592Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1916T>C
  hgvsp: ENSP00000474358.1:p.Leu639Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2256T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1916T>C
  hgvsp: ENSP00000414415.2:p.Leu639Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2186T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1721T>C
  hgvsp: ENSP00000323897.8:p.Leu574Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1775T>C
  hgvsp: ENSP00000352039.5:p.Leu592Pro
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16720
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu639Pro
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/16-3613167-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613167
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613167
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 62704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2182G>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1912G>T
  hgvsp: ENSP00000414415.2:p.Ala638Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1717G>T
  hgvsp: ENSP00000323897.8:p.Ala573Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2252G>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1912G>T
  hgvsp: ENSP00000474358.1:p.Ala638Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1771G>T
  hgvsp: ENSP00000352039.5:p.Ala591Ser
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1771G>T
  hgvsp: ENSP00000301749.7:p.Ala591Ser
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21615
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala638Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-3613170-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613170
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613170
    reference: chr 16
allele count: 6
allele frequency: 9.539254030334828e-5
allele num: 62898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1714G>A
  hgvsp: ENSP00000323897.8:p.Gly572Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1909G>A
  hgvsp: ENSP00000474358.1:p.Gly637Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1768G>A
  hgvsp: ENSP00000301749.7:p.Gly590Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1768G>A
  hgvsp: ENSP00000352039.5:p.Gly590Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1909G>A
  hgvsp: ENSP00000414415.2:p.Gly637Arg
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2179G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2249G>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21623
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16628
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5946
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly637Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

16-3613176-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613176
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613176
    reference: chr 16
allele count: 2
allele frequency: 3.167363486633726e-5
allele num: 63144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2243G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1903G>A
  hgvsp: ENSP00000414415.2:p.Glu635Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2173G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1762G>A
  hgvsp: ENSP00000301749.7:p.Glu588Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1903G>A
  hgvsp: ENSP00000474358.1:p.Glu635Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1762G>A
  hgvsp: ENSP00000352039.5:p.Glu588Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1708G>A
  hgvsp: ENSP00000323897.8:p.Glu570Lys
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16221
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7583
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu635Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

16-3613181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613181
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613181
    reference: chr 16
allele count: 10
allele frequency: 1.580627825372238e-4
allele num: 63266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1703C>T
  hgvsp: ENSP00000323897.8:p.Ala568Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1898C>T
  hgvsp: ENSP00000474358.1:p.Ala633Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1898C>T
  hgvsp: ENSP00000414415.2:p.Ala633Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1757C>T
  hgvsp: ENSP00000301749.7:p.Ala586Val
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2168C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2238C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1757C>T
  hgvsp: ENSP00000352039.5:p.Ala586Val
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21960
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5756
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala633Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

16-3613181-GCCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613181
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613178
    reference: chr 16
allele count: 1
allele frequency: 1.580627825372238e-5
allele num: 63266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2165_2167delAGG
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1754_1756delAGG
  hgvsp: ENSP00000301749.7:p.Glu585del
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1895_1897delAGG
  hgvsp: ENSP00000414415.2:p.Glu632del
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1895_1897delAGG
  hgvsp: ENSP00000474358.1:p.Glu632del
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1700_1702delAGG
  hgvsp: ENSP00000323897.8:p.Glu567del
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1754_1756delAGG
  hgvsp: ENSP00000352039.5:p.Glu585del
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2235_2237delAGG
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16012
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21960
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu632del
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: GCCT
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-3613183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613183
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613183
    reference: chr 16
allele count: 2
allele frequency: 3.161655442789845e-5
allele num: 63258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1896G>A
  hgvsp: ENST00000603507.1:c.1896G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2236G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1896G>A
  hgvsp: ENST00000448023.2:c.1896G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1755G>A
  hgvsp: ENST00000301749.7:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1755G>A
  hgvsp: ENST00000359128.5:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1701G>A
  hgvsp: ENST00000324659.8:c.1701G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2166G>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5648
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu632Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

16-3613186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613186
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613186
    reference: chr 16
allele count: 12
allele frequency: 1.891491441001229e-4
allele num: 63442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1752G>A
  hgvsp: ENST00000359128.5:c.1752G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1893G>A
  hgvsp: ENST00000603507.1:c.1893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2233G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1698G>A
  hgvsp: ENST00000324659.8:c.1698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1752G>A
  hgvsp: ENST00000301749.7:c.1752G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1893G>A
  hgvsp: ENST00000448023.2:c.1893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2163G>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15819
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22020
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu631Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

16-3613188-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613188
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613188
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 63570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2231G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1891G>A
  hgvsp: ENSP00000474358.1:p.Glu631Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1750G>A
  hgvsp: ENSP00000352039.5:p.Glu584Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1750G>A
  hgvsp: ENSP00000301749.7:p.Glu584Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2161G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1891G>A
  hgvsp: ENSP00000414415.2:p.Glu631Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1696G>A
  hgvsp: ENSP00000323897.8:p.Glu566Lys
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22042
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5531
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu631Lys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

16-3613191-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613191
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613191
    reference: chr 16
allele count: 5
allele frequency: 7.851512201249961e-5
allele num: 63682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1888G>A
  hgvsp: ENSP00000474358.1:p.Val630Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2228G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1693G>A
  hgvsp: ENSP00000323897.8:p.Val565Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1888G>A
  hgvsp: ENSP00000414415.2:p.Val630Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2158G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1747G>A
  hgvsp: ENSP00000301749.7:p.Val583Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1747G>A
  hgvsp: ENSP00000352039.5:p.Val583Met
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15601
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5416
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23033
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val630Met
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-3613192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613192
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613192
    reference: chr 16
allele count: 45
allele frequency: 7.049976500078333e-4
allele num: 63830
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1887C>T
  hgvsp: ENST00000448023.2:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1746C>T
  hgvsp: ENST00000359128.5:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2227C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1692C>T
  hgvsp: ENST00000324659.8:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1887C>T
  hgvsp: ENST00000603507.1:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1746C>T
  hgvsp: ENST00000301749.7:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2157C>T
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22111
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15523
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8350
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5466
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4736
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser629Ser
num of homozygotes: 1
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-3613196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613196
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613196
    reference: chr 16
allele count: 8
allele frequency: 1.255374572388036e-4
allele num: 63726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1688G>A
  hgvsp: ENSP00000323897.8:p.Arg563His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1742G>A
  hgvsp: ENSP00000301749.7:p.Arg581His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2153G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1742G>A
  hgvsp: ENSP00000352039.5:p.Arg581His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1883G>A
  hgvsp: ENSP00000414415.2:p.Arg628His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1883G>A
  hgvsp: ENSP00000474358.1:p.Arg628His
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2223G>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15389
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22014
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7911
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg628His
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

16-3613197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613197
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613197
    reference: chr 16
allele count: 18
allele frequency: 2.796333695821035e-4
allele num: 64370
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1882C>T
  hgvsp: ENSP00000414415.2:p.Arg628Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1882C>T
  hgvsp: ENSP00000474358.1:p.Arg628Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2222C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2152C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1687C>T
  hgvsp: ENSP00000323897.8:p.Arg563Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1741C>T
  hgvsp: ENSP00000352039.5:p.Arg581Cys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1741C>T
  hgvsp: ENSP00000301749.7:p.Arg581Cys
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22059
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15328
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg628Cys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

16-3613201-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613201
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613201
    reference: chr 16
allele count: 5
allele frequency: 7.645493745986116e-5
allele num: 65398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2148G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1878G>A
  hgvsp: ENST00000448023.2:c.1878G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1737G>A
  hgvsp: ENST00000359128.5:c.1737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1737G>A
  hgvsp: ENST00000301749.7:c.1737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1683G>A
  hgvsp: ENST00000324659.8:c.1683G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2218G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1878G>A
  hgvsp: ENST00000603507.1:c.1878G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4966
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu626Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

16-3613203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613203
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613203
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 65418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1735C>T
  hgvsp: ENST00000359128.5:c.1735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1876C>T
  hgvsp: ENST00000448023.2:c.1876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2216C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1681C>T
  hgvsp: ENST00000324659.8:c.1681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2146C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1735C>T
  hgvsp: ENST00000301749.7:c.1735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1876C>T
  hgvsp: ENST00000603507.1:c.1876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22068
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu626Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-3613204-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613204
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613204
    reference: chr 16
allele count: 4
allele frequency: 6.092360180333861e-5
allele num: 65656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1680G>T
  hgvsp: ENSP00000323897.8:p.Glu560Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1734G>T
  hgvsp: ENSP00000352039.5:p.Glu578Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1875G>T
  hgvsp: ENSP00000414415.2:p.Glu625Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1734G>T
  hgvsp: ENSP00000301749.7:p.Glu578Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1875G>T
  hgvsp: ENSP00000474358.1:p.Glu625Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2145G>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2215G>T
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15029
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4812
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Glu625Asp
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-3613205-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613205
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613205
    reference: chr 16
allele count: 1
allele frequency: 1.514508996183437e-5
allele num: 66028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1874A>C
  hgvsp: ENSP00000474358.1:p.Glu625Ala
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1874A>C
  hgvsp: ENSP00000414415.2:p.Glu625Ala
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1733A>C
  hgvsp: ENSP00000352039.5:p.Glu578Ala
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1733A>C
  hgvsp: ENSP00000301749.7:p.Glu578Ala
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2144A>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1679A>C
  hgvsp: ENSP00000323897.8:p.Glu560Ala
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2214A>C
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23854
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu625Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

16-3613206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613206
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613206
    reference: chr 16
allele count: 1
allele frequency: 1.519248883352071e-5
allele num: 65822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2213G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1873G>A
  hgvsp: ENSP00000414415.2:p.Glu625Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1873G>A
  hgvsp: ENSP00000474358.1:p.Glu625Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1678G>A
  hgvsp: ENSP00000323897.8:p.Glu560Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1732G>A
  hgvsp: ENSP00000352039.5:p.Glu578Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1732G>A
  hgvsp: ENSP00000301749.7:p.Glu578Lys
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2143G>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu625Lys
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-3613207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613207
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613207
    reference: chr 16
allele count: 4075
allele frequency: 5.856063001178398e-2
allele num: 69586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1731C>T
  hgvsp: ENST00000301749.7:c.1731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2142C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1677C>T
  hgvsp: ENST00000324659.8:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2212C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1731C>T
  hgvsp: ENST00000359128.5:c.1731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1872C>T
  hgvsp: ENST00000603507.1:c.1872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1872C>T
  hgvsp: ENST00000448023.2:c.1872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19953
  bin: 7.5e0
  variant carriers: 702
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 2.25e1
  variant carriers: 566
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 14808
  bin: 1.25e1
  variant carriers: 1222
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.75e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 1.75e1
  variant carriers: 998
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 7.5e0
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.25e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 4.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 2.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 3.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 19874
  bin: 2.25e1
  variant carriers: 56
hgvs: p.Thr624Thr
num of homozygotes: 259
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

16-3613207-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613207
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613207
    reference: chr 16
allele count: 5302
allele frequency: 7.619348719570028e-2
allele num: 69586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2142C>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1872C>A
  hgvsp: ENST00000448023.2:c.1872C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1731C>A
  hgvsp: ENST00000359128.5:c.1731C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1872C>A
  hgvsp: ENST00000603507.1:c.1872C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1677C>A
  hgvsp: ENST00000324659.8:c.1677C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1731C>A
  hgvsp: ENST00000301749.7:c.1731C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2212C>A
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 1.75e1
  variant carriers: 1561
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.75e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 2.25e1
  variant carriers: 888
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19953
  bin: 7.5e0
  variant carriers: 942
genotype depth: GenotypeDepth
  all individuals: 14808
  bin: 1.25e1
  variant carriers: 1829
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 7.5e0
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 2.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 4.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 8726
  bin: 6.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.25e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 5.25e1
  variant carriers: 82
hgvs: p.Thr624Thr
num of homozygotes: 162
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-3613216-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613216
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613216
    reference: chr 16
allele count: 1
allele frequency: 1.421302481594133e-5
allele num: 70358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2133G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1668G>A
  hgvsp: ENST00000324659.8:c.1668G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1722G>A
  hgvsp: ENST00000359128.5:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1722G>A
  hgvsp: ENST00000301749.7:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2203G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1863G>A
  hgvsp: ENST00000603507.1:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1863G>A
  hgvsp: ENST00000448023.2:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14183
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11367
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22918
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu621Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

16-3613219-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613219
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613219
    reference: chr 16
allele count: 2
allele frequency: 2.807017543859649e-5
allele num: 71250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2200G>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1860G>C
  hgvsp: ENSP00000414415.2:p.Glu620Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2130G>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1719G>C
  hgvsp: ENSP00000301749.7:p.Glu573Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1860G>C
  hgvsp: ENSP00000474358.1:p.Glu620Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1665G>C
  hgvsp: ENSP00000323897.8:p.Glu555Asp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1719G>C
  hgvsp: ENSP00000352039.5:p.Glu573Asp
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu620Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

16-3613223-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613223
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613223
    reference: chr 16
allele count: 1
allele frequency: 1.37797988149373e-5
allele num: 72570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2196A>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1715A>C
  hgvsp: ENSP00000352039.5:p.His572Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2126A>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1856A>C
  hgvsp: ENSP00000414415.2:p.His619Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1715A>C
  hgvsp: ENSP00000301749.7:p.His572Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1661A>C
  hgvsp: ENSP00000323897.8:p.His554Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1856A>C
  hgvsp: ENSP00000474358.1:p.His619Pro
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20182
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His619Pro
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

16-3613226-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613226
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613226
    reference: chr 16
allele count: 1
allele frequency: 1.360211104763459e-5
allele num: 73518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1712T>C
  hgvsp: ENSP00000301749.7:p.Leu571Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1853T>C
  hgvsp: ENSP00000414415.2:p.Leu618Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1712T>C
  hgvsp: ENSP00000352039.5:p.Leu571Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2123T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1853T>C
  hgvsp: ENSP00000474358.1:p.Leu618Pro
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2193T>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1658T>C
  hgvsp: ENSP00000323897.8:p.Leu553Pro
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu618Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

16-3613231-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613231
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613231
    reference: chr 16
allele count: 1
allele frequency: 1.333724559204033e-5
allele num: 74978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1707C>G
  hgvsp: ENSP00000301749.7:p.His569Gln
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1848C>G
  hgvsp: ENSP00000414415.2:p.His616Gln
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1653C>G
  hgvsp: ENSP00000323897.8:p.His551Gln
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1707C>G
  hgvsp: ENSP00000352039.5:p.His569Gln
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2188C>G
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1848C>G
  hgvsp: ENSP00000474358.1:p.His616Gln
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2118C>G
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22772
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18393
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His616Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

16-3613234-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613234
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613234
    reference: chr 16
allele count: 1
allele frequency: 1.320515529262624e-5
allele num: 75728
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1845G>C
  hgvsp: ENSP00000414415.2:p.Leu615Phe
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2115G>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2185G>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1650G>C
  hgvsp: ENSP00000323897.8:p.Leu550Phe
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1704G>C
  hgvsp: ENSP00000352039.5:p.Leu568Phe
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1845G>C
  hgvsp: ENSP00000474358.1:p.Leu615Phe
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1704G>C
  hgvsp: ENSP00000301749.7:p.Leu568Phe
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu615Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

16-3613234-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613234
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613234
    reference: chr 16
allele count: 1
allele frequency: 1.320515529262624e-5
allele num: 75728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1650G>A
  hgvsp: ENST00000324659.8:c.1650G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1704G>A
  hgvsp: ENST00000301749.7:c.1704G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1845G>A
  hgvsp: ENST00000603507.1:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2115G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2185G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1704G>A
  hgvsp: ENST00000359128.5:c.1704G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1845G>A
  hgvsp: ENST00000448023.2:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu615Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-3613239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613239
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613239
    reference: chr 16
allele count: 1172
allele frequency: 1.515778582514227e-2
allele num: 77320
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1840G>A
  hgvsp: ENSP00000414415.2:p.Val614Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1645G>A
  hgvsp: ENSP00000323897.8:p.Val549Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2110G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1699G>A
  hgvsp: ENSP00000352039.5:p.Val567Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2180G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1840G>A
  hgvsp: ENSP00000474358.1:p.Val614Met
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1699G>A
  hgvsp: ENSP00000301749.7:p.Val567Met
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 1.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 1.25e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18414
  bin: 7.5e0
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 2.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 18933
  bin: 2.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 6.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.25e1
  variant carriers: 14
hgvs: p.Val614Met
num of homozygotes: 42
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

16-3613239-CGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613239
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613237
    reference: chr 16
allele count: 1
allele frequency: 1.293326435592343e-5
allele num: 77320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1643_1644delAC
  hgvsp: ENSP00000323897.8:p.Asn548SerfsTer7
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1697_1698delAC
  hgvsp: ENSP00000352039.5:p.Asn566SerfsTer7
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1838_1839delAC
  hgvsp: ENSP00000414415.2:p.Asn613SerfsTer7
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2108_2109delAC
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1838_1839delAC
  hgvsp: ENSP00000474358.1:p.Asn613SerfsTer7
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1697_1698delAC
  hgvsp: ENSP00000301749.7:p.Asn566SerfsTer7
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2178_2179delAC
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn613SerfsTer7
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: CGT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

16-3613240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613240
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613240
    reference: chr 16
allele count: 5
allele frequency: 6.456444823222541e-5
allele num: 77442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1698C>T
  hgvsp: ENST00000301749.7:c.1698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2109C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1839C>T
  hgvsp: ENST00000448023.2:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1839C>T
  hgvsp: ENST00000603507.1:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2179C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1698C>T
  hgvsp: ENST00000359128.5:c.1698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1644C>T
  hgvsp: ENST00000324659.8:c.1644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19473
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn613Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

16-3613243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613243
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613243
    reference: chr 16
allele count: 3
allele frequency: 3.859315100213549e-5
allele num: 77734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1641C>T
  hgvsp: ENST00000324659.8:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1695C>T
  hgvsp: ENST00000359128.5:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2106C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2176C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1695C>T
  hgvsp: ENST00000301749.7:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1836C>T
  hgvsp: ENST00000603507.1:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1836C>T
  hgvsp: ENST00000448023.2:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18295
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile612Ile
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

16-3613251-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613251
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613251
    reference: chr 16
allele count: 3
allele frequency: 3.768749528906309e-5
allele num: 79602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2098C>T
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1687C>T
  hgvsp: ENSP00000301749.7:p.Arg563Trp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1828C>T
  hgvsp: ENSP00000474358.1:p.Arg610Trp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1633C>T
  hgvsp: ENSP00000323897.8:p.Arg545Trp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1687C>T
  hgvsp: ENSP00000352039.5:p.Arg563Trp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1828C>T
  hgvsp: ENSP00000414415.2:p.Arg610Trp
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2168C>T
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg610Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

16-3613256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613256
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613256
    reference: chr 16
allele count: 1
allele frequency: 1.247940897519093e-5
allele num: 80132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1682G>A
  hgvsp: ENSP00000352039.5:p.Cys561Tyr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1682G>A
  hgvsp: ENSP00000301749.7:p.Cys561Tyr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1628G>A
  hgvsp: ENSP00000323897.8:p.Cys543Tyr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2093G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2163G>A
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1823G>A
  hgvsp: ENSP00000414415.2:p.Cys608Tyr
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1823G>A
  hgvsp: ENSP00000474358.1:p.Cys608Tyr
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8718
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys608Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

16-3613260-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3613260
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3613260
    reference: chr 16
allele count: 2
allele frequency: 2.484225170169424e-5
allele num: 80508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000301749
  ensembl transcript: ENST00000301749
  gene symbol: NLRC3
  hgvsc: ENST00000301749.7:c.1678G>C
  hgvsp: ENSP00000301749.7:p.Val560Leu
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000414415
  ensembl transcript: ENST00000448023
  gene symbol: NLRC3
  hgvsc: ENST00000448023.2:c.1819G>C
  hgvsp: ENSP00000414415.2:p.Val607Leu
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000419350
  gene symbol: NLRC3
  hgvsc: ENST00000419350.2:n.2159G>C
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000352039
  ensembl transcript: ENST00000359128
  gene symbol: NLRC3
  hgvsc: ENST00000359128.5:c.1678G>C
  hgvsp: ENSP00000352039.5:p.Val560Leu
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000474358
  ensembl transcript: ENST00000603507
  gene symbol: NLRC3
  hgvsc: ENST00000603507.1:c.1819G>C
  hgvsp: ENSP00000474358.1:p.Val607Leu
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167984
  ensembl protein: ENSP00000323897
  ensembl transcript: ENST00000324659
  gene symbol: NLRC3
  hgvsc: ENST00000324659.8:c.1624G>C
  hgvsp: ENSP00000323897.8:p.Val542Leu
  variant of: http://identifiers.org/hgnc/29889
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167984
  ensembl transcript: ENST00000603128
  gene symbol: NLRC3
  hgvsc: ENST00000603128.1:n.2089G>C
  variant of: http://identifiers.org/hgnc/29889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val607Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

19-5594143-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594143
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594143
    reference: chr 19
allele count: 2
allele frequency: 2.233089926531341e-5
allele num: 89562
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1966G>C
  hgvsp: ENSP00000252542.3:p.Glu656Gln
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6385
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31306
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14093
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu656Gln
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.532801961986511e-4
  allele num: 13048
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6948
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

19-5594144-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594144
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594144
    reference: chr 19
allele count: 7
allele frequency: 7.749535027898326e-5
allele num: 90328
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1965T>C
  hgvsp: ENST00000252542.4:c.1965T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12301
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 274
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34552
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His655His
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 50336
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7006
  num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-5594146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594146
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594146
    reference: chr 19
allele count: 1
allele frequency: 1.099239326386141e-5
allele num: 90972
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1963C>T
  hgvsp: ENSP00000252542.3:p.His655Tyr
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31950
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 57
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genotype quality: GenotypeQuality
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His655Tyr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6100
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 7.67341927562922e-5
  allele num: 13032
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-5594146-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594146
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594146
    reference: chr 19
allele count: 55
allele frequency: 6.045816295123774e-4
allele num: 90972
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1963C>A
  hgvsp: ENSP00000252542.3:p.His655Asn
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31950
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34115
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His655Asn
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 39
  allele frequency: 7.684123418843835e-4
  allele num: 50754
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4006
  num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-5594152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594152
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594152
    reference: chr 19
allele count: 1
allele frequency: 1.068284761986155e-5
allele num: 93608
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1957G>A
  hgvsp: ENSP00000252542.3:p.Ala653Thr
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 33222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2679
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36517
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala653Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7310
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9730
  num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-5594163-T-TGCTCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594163
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594169
    reference: chr 19
allele count: 3
allele frequency: 3.131066441229883e-5
allele num: 95814
alternate allele: TGCTCCC
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1940_1945dupGGGAGC
  hgvsp: ENSP00000252542.3:p.Arg647_Glu648dup
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11556
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg647_Glu648dup
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6560
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 5.604543416529667e-5
  allele num: 53528
  num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-5594165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594165
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594165
    reference: chr 19
allele count: 1
allele frequency: 1.052232838082411e-5
allele num: 95036
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1944G>A
  hgvsp: ENST00000252542.4:c.1944G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32001
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33962
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 411
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu648Glu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10020
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 7.887679444707367e-5
  allele num: 12678
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

19-5594166-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594166
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594166
    reference: chr 19
allele count: 1
allele frequency: 1.051038425964853e-5
allele num: 95144
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1943A>G
  hgvsp: ENSP00000252542.3:p.Glu648Gly
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
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genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 34436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 11716
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2741
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genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu648Gly
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10028
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 628
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-5594169-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5594169
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 5594169
    reference: chr 19
allele count: 2
allele frequency: 2.092225290819315e-5
allele num: 95592
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130254
  ensembl protein: ENSP00000252542
  ensembl transcript: ENST00000252542
  gene symbol: SAFB2
  hgvsc: ENST00000252542.4:c.1940G>A
  hgvsp: ENSP00000252542.3:p.Arg647Gln
  variant of: http://identifiers.org/hgnc/21605
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg647Gln
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.43e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.201e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.307e0

DP
type: SiteQuality
SIO_000300: 4.44971e5

QD
type: SiteQuality
SIO_000300: 1.03e1

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.808e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
SIO_000300: 4.62732e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.097e1

GenotypeQuality
all individuals: 132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 364
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.190759704691593e-4
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -6.369e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.66046e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
all individuals: 669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4536
bin: 6.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.269035532994924e-3
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 4.68012e5

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.383e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.23e-2

QD
type: SiteQuality
SIO_000300: 1.264e1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

DP
type: SiteQuality
SIO_000300: 4.81291e5

GenotypeQuality
all individuals: 599
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15590
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.047559187094071e-4
allele num: 9546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.16e-2

QD
type: SiteQuality
SIO_000300: 8.33e0

DP
type: SiteQuality
SIO_000300: 4.82501e5

VQSLOD
type: SiteQuality
SIO_000300: 1.51e-1

GenotypeQuality
all individuals: 157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15214
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3982
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.943e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.82782e5

QD
type: SiteQuality
SIO_000300: 1.009e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

GenotypeQuality
all individuals: 58
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13419
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 2.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.271277582050807e-5
allele num: 10786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

DP
type: SiteQuality
SIO_000300: 4.92713e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

GenotypeQuality
all individuals: 743
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31034
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.072763563781528e-5
allele num: 11022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.79e-2

FS
type: SiteQuality
SIO_000300: 2.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.435e0

DP
type: SiteQuality
SIO_000300: 4.96456e5

QD
type: SiteQuality
SIO_000300: 3.65e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12658
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 867
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31036
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.869966294128082e-5
allele num: 11274
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.284686536485098e-4
allele num: 7784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.263e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.568e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1762e1

MQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 1.494e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

DP
type: SiteQuality
SIO_000300: 5.00218e5

GenotypeQuality
all individuals: 222
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31747
bin: 2.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1750
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.103342689461597e-4
allele num: 7838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.464403256539061e-4
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

FS
type: SiteQuality
SIO_000300: 1.728e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.04792e5

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

GenotypeQuality
all individuals: 424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2712
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.270325203252033e-4
allele num: 7872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

DP
type: SiteQuality
SIO_000300: 5.16141e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 492
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31941
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.623113279463333e-5
allele num: 13118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2454
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

DP
type: SiteQuality
SIO_000300: 5.17546e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 552
bin: 4.25e1
variant carriers: 295

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 593

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 341

GenotypeQuality
all individuals: 1248
bin: 3.75e1
variant carriers: 412

GenotypeQuality
all individuals: 7345
bin: 7.5e0
variant carriers: 254

GenotypeQuality
all individuals: 660
bin: 9.25e1
variant carriers: 647

GenotypeQuality
all individuals: 2009
bin: 3.25e1
variant carriers: 466

GenotypeQuality
all individuals: 770
bin: 5.25e1
variant carriers: 572

GenotypeQuality
all individuals: 650
bin: 6.75e1
variant carriers: 475

GenotypeQuality
all individuals: 12072
bin: 9.75e1
variant carriers: 12049

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 482

African
type: Population
allele count: 1283
allele frequency: 3.53638368246968e-1
allele num: 3628
num of homozygotes: 169

South Asian
type: Population
allele count: 2721
allele frequency: 2.934009057580332e-1
allele num: 9274
num of homozygotes: 339

European (Non-Finnish)
type: Population
allele count: 8380
allele frequency: 3.647919205989901e-1
allele num: 22972
num of homozygotes: 862

European (Finnish)
type: Population
allele count: 366
allele frequency: 3.804573804573805e-1
allele num: 962
num of homozygotes: 37

Other
type: Population
allele count: 107
allele frequency: 3.474025974025974e-1
allele num: 308
num of homozygotes: 15

East Asian
type: Population
allele count: 1757
allele frequency: 4.482142857142857e-1
allele num: 3920
num of homozygotes: 286

Latino
type: Population
allele count: 1438
allele frequency: 3.846976993044409e-1
allele num: 3738
num of homozygotes: 157

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

DP
type: SiteQuality
SIO_000300: 6.08075e5

FS
type: SiteQuality
SIO_000300: 4.061e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.818e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

GenotypeQuality
all individuals: 3762
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3664
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25098
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2458
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

QD
type: SiteQuality
SIO_000300: 3.87e0

FS
type: SiteQuality
SIO_000300: 3.634e0

MQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.85231e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.052e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.13e-1

GenotypeQuality
all individuals: 3438
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24669
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.613264427217915e-5
allele num: 23220
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.90748e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

FS
type: SiteQuality
SIO_000300: 5.674e0

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

GenotypeQuality
all individuals: 25790
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2389
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.243401510650938e-5
allele num: 23566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.661e0

DP
type: SiteQuality
SIO_000300: 5.94537e5

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.98e-1

GenotypeQuality
all individuals: 3711
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2819
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1149
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1358
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3444
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 338
bin: 9.75e1
variant carriers: 182

GenotypeQuality
all individuals: 3270
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 449
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 84
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 37
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 139
bin: 7.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 63
allele frequency: 2.652408218255305e-3
allele num: 23752
num of homozygotes: 0

African
type: Population
allele count: 68
allele frequency: 1.851851851851852e-2
allele num: 3672
num of homozygotes: 1

Latino
type: Population
allele count: 42
allele frequency: 1.043737574552684e-2
allele num: 4024
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4022
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 2.407002188183808e-3
allele num: 9140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 5.9839e5

FS
type: SiteQuality
SIO_000300: 2.488e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

GenotypeQuality
all individuals: 3491
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 2
allele frequency: 4.96031746031746e-4
allele num: 4032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3666
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.450980392156863e-4
allele num: 4080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.360504974500459e-5
allele num: 23922
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.193e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 6.01573e5

FS
type: SiteQuality
SIO_000300: 9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
all individuals: 157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7463
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3399
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 155
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 8.250825082508251e-4
allele num: 24240
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.261578604044357e-4
allele num: 9198
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.26797385620915e-3
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 998
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 8.090614886731392e-4
allele num: 3708
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.914004914004914e-4
allele num: 4070
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.405002405002405e-4
allele num: 4158
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.07786e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.004e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

QD
type: SiteQuality
SIO_000300: 1.463e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 502
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25678
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5281
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3818
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.07781849536538e-4
allele num: 9278
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.246753246753247e-3
allele num: 308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.421307506053269e-4
allele num: 4130
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 2.296e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.16e1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.65e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 6.11796e5

GenotypeQuality
all individuals: 506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.07000407000407e-5
allele num: 24570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

QD
type: SiteQuality
SIO_000300: 9.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

DP
type: SiteQuality
SIO_000300: 6.14597e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
all individuals: 5280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3549
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.069747539580659e-4
allele num: 9348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1044
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.327746741154562e-4
allele num: 4296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.009944662763654e-5
allele num: 24938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.59e0

FS
type: SiteQuality
SIO_000300: 4.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
SIO_000300: 6.19671e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 3841
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26076
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6725
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.89741990802089e-5
allele num: 25658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

QD
type: SiteQuality
SIO_000300: 7.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 6.28499e5

FS
type: SiteQuality
SIO_000300: 1.725e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
all individuals: 1905
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6592
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.878975950349108e-5
allele num: 25780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.913e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

DP
type: SiteQuality
SIO_000300: 6.31974e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 2.766e1

VQSLOD
type: SiteQuality
SIO_000300: -2.443e0

FS
type: SiteQuality
SIO_000300: 8.151999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 6515
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3831
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5291
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 610
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.855050115651503e-5
allele num: 25940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

DP
type: SiteQuality
SIO_000300: 6.3584e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.772e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

MQ
type: SiteQuality
SIO_000300: 5.88e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 8.42e0

GenotypeQuality
all individuals: 1323
bin: 5.75e1
variant carriers: 1295

GenotypeQuality
all individuals: 1997
bin: 2.75e1
variant carriers: 1574

GenotypeQuality
all individuals: 1632
bin: 4.25e1
variant carriers: 1577

GenotypeQuality
all individuals: 3270
bin: 3.25e1
variant carriers: 2885

GenotypeQuality
all individuals: 2362
bin: 1.75e1
variant carriers: 1934

GenotypeQuality
all individuals: 999
bin: 9.25e1
variant carriers: 999

GenotypeQuality
all individuals: 8217
bin: 2.25e1
variant carriers: 2567

GenotypeQuality
all individuals: 2684
bin: 7.5e0
variant carriers: 783

GenotypeQuality
all individuals: 2292
bin: 5.25e1
variant carriers: 2252

GenotypeQuality
all individuals: 2670
bin: 4.75e1
variant carriers: 2624

GenotypeQuality
all individuals: 1224
bin: 6.75e1
variant carriers: 1174

African
type: Population
allele count: 5390
allele frequency: 9.077130346918154e-1
allele num: 5938
num of homozygotes: 2432

European (Finnish)
type: Population
allele count: 1312
allele frequency: 6.034958601655934e-1
allele num: 2174
num of homozygotes: 306

Latino
type: Population
allele count: 5404
allele frequency: 7.412894375857338e-1
allele num: 7290
num of homozygotes: 1877

South Asian
type: Population
allele count: 9242
allele frequency: 7.705519426379857e-1
allele num: 11994
num of homozygotes: 3518

East Asian
type: Population
allele count: 5163
allele frequency: 8.447316753926701e-1
allele num: 6112
num of homozygotes: 2148

European (Non-Finnish)
type: Population
allele count: 22563
allele frequency: 6.015837466005439e-1
allele num: 37506
num of homozygotes: 5668

Other
type: Population
allele count: 310
allele frequency: 6.623931623931624e-1
allele num: 468
num of homozygotes: 96

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 2.371e1

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.204e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.67811e5

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5678
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3896
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10918
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.93766e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 6.51e0

FS
type: SiteQuality
SIO_000300: 4.376e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.254e0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4889
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1764
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.97548202808855e-5
allele num: 33608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.92202e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

QD
type: SiteQuality
SIO_000300: 2.371e1

VQSLOD
type: SiteQuality
SIO_000300: -1.829e0

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

QD
type: SiteQuality
SIO_000300: 5.72e0

FS
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

DP
type: SiteQuality
SIO_000300: 6.91632e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.970149253731343e-5
allele num: 33500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.6e0

VQSLOD
type: SiteQuality
SIO_000300: -2.942e-1

FS
type: SiteQuality
SIO_000300: 1.523e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 6.91983e5

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33354
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.869e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.107e0

MQRankSum
type: SiteQuality
SIO_000300: 3.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

QD
type: SiteQuality
SIO_000300: 2.591e1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.92728e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

GenotypeQuality
all individuals: 254
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4904
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2144
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 850
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.950414702547884e-5
allele num: 33518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.906214258482653e-4
allele num: 5246
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.5625e-4
allele num: 6400
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.43e0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.96271e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

FS
type: SiteQuality
SIO_000300: 5.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5806
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 268
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GenotypeQuality
all individuals: 89
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variant carriers: 2

GenotypeQuality
all individuals: 567
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variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.929088106249259e-5
allele num: 33732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.04952e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

QD
type: SiteQuality
SIO_000300: 8.83e0

GenotypeQuality
all individuals: 1958
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 9.274717121127806e-4
allele num: 10782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.049e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.10471e5

FS
type: SiteQuality
SIO_000300: 5.28e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

QD
type: SiteQuality
SIO_000300: 1.2e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.889644746787604e-4
allele num: 5292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 5.28e0

DP
type: SiteQuality
SIO_000300: 7.10471e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

QD
type: SiteQuality
SIO_000300: 1.2e1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.049e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4788
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.770739064856712e-4
allele num: 5304
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

DP
type: SiteQuality
SIO_000300: 7.10031e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3455
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 277
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 3.526093088857546e-4
allele num: 34032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1700
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 7.311e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.151e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 7.1401e5

GenotypeQuality
all individuals: 275
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 966
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GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5314
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 7.17318e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

FS
type: SiteQuality
SIO_000300: 1.0488e1

VQSLOD
type: SiteQuality
SIO_000300: -2.097e0

QD
type: SiteQuality
SIO_000300: 3.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.216589861751152e-5
allele num: 10850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.168633867009466e-4
allele num: 34228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.21384e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.542e1

GenotypeQuality
all individuals: 23589
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5392
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 915
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variant carriers: 0

GenotypeQuality
all individuals: 8903
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.092050209205021e-4
allele num: 4780
num of homozygotes: 0

East Asian
type: Population
allele count: 42
allele frequency: 7.850467289719627e-3
allele num: 5350
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.221689413500554e-5
allele num: 10844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.913752913752914e-5
allele num: 34320
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

DP
type: SiteQuality
SIO_000300: 7.25345e5

GenotypeQuality
all individuals: 1099
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2911
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variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.725495899016927e-5
allele num: 34382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.176470588235294e-3
allele num: 1700
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.653976630229929e-4
allele num: 5306
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 7.32314e5

QD
type: SiteQuality
SIO_000300: 1.21e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.048e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 872
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8585
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GenotypeQuality
all individuals: 5187
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 1095
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GenotypeQuality
all individuals: 131
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4806
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.177679882525697e-5
allele num: 10896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 4.604051565377532e-4
allele num: 34752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.720823798627002e-4
allele num: 1748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

FS
type: SiteQuality
SIO_000300: 1.0992e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.023e1

VQSLOD
type: SiteQuality
SIO_000300: -1.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 7.3527e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4674
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GenotypeQuality
all individuals: 994
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variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 6.127450980392157e-4
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.826136106714899e-5
allele num: 35384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

DP
type: SiteQuality
SIO_000300: 7.44844e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.135e0

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

QD
type: SiteQuality
SIO_000300: 1.165e1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.307e0

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

DP
type: SiteQuality
SIO_000300: 7.47998e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.505e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 97
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variant carriers: 3

Latino
type: Population
allele count: 2
allele frequency: 3.060912151821243e-4
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.049180327868852e-4
allele num: 4880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
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Other
type: Population
allele count: 1
allele frequency: 2.392344497607655e-3
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.50703e5

FS
type: SiteQuality
SIO_000300: 3.692e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.032e0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.99e-1

GenotypeQuality
all individuals: 5285
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.791424743188923e-5
allele num: 35824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.987e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.53132e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

QD
type: SiteQuality
SIO_000300: 5.68e0

GenotypeQuality
all individuals: 95
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23654
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9621
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35708
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.104151493080845e-5
allele num: 10984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.804e-1

FS
type: SiteQuality
SIO_000300: 1.144e0

QD
type: SiteQuality
SIO_000300: 7.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.97e-1

DP
type: SiteQuality
SIO_000300: 7.56659e5

GenotypeQuality
all individuals: 7964
bin: 9.75e1
variant carriers: 3394

GenotypeQuality
all individuals: 863
bin: 6.75e1
variant carriers: 68

GenotypeQuality
all individuals: 298
bin: 7.25e1
variant carriers: 71

GenotypeQuality
all individuals: 1132
bin: 1.25e1
variant carriers: 26

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 115

GenotypeQuality
all individuals: 1037
bin: 4.75e1
variant carriers: 73

GenotypeQuality
all individuals: 285
bin: 5.75e1
variant carriers: 54

GenotypeQuality
all individuals: 1450
bin: 1.75e1
variant carriers: 68

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 98

GenotypeQuality
all individuals: 697
bin: 5.25e1
variant carriers: 83

GenotypeQuality
all individuals: 8726
bin: 6.25e1
variant carriers: 76

South Asian
type: Population
allele count: 1680
allele frequency: 1.436634171369933e-1
allele num: 11694
num of homozygotes: 132

Latino
type: Population
allele count: 177
allele frequency: 2.587719298245614e-2
allele num: 6840
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 51
allele frequency: 2.34375e-2
allele num: 2176
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 639
allele frequency: 1.709104525516209e-2
allele num: 37388
num of homozygotes: 4

East Asian
type: Population
allele count: 383
allele frequency: 6.805259417199716e-2
allele num: 5628
num of homozygotes: 6

African
type: Population
allele count: 1121
allele frequency: 2.070557813077207e-1
allele num: 5414
num of homozygotes: 108

Other
type: Population
allele count: 24
allele frequency: 5.381165919282511e-2
allele num: 446
num of homozygotes: 3

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

FS
type: SiteQuality
SIO_000300: 1.103e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.019e-1

DP
type: SiteQuality
SIO_000300: 8.10422e5

GenotypeQuality
all individuals: 4046
bin: 3.25e1
variant carriers: 50

GenotypeQuality
all individuals: 1450
bin: 1.75e1
variant carriers: 56

GenotypeQuality
all individuals: 1037
bin: 4.75e1
variant carriers: 80

GenotypeQuality
all individuals: 285
bin: 7.75e1
variant carriers: 117

GenotypeQuality
all individuals: 311
bin: 9.25e1
variant carriers: 176

GenotypeQuality
all individuals: 863
bin: 6.75e1
variant carriers: 78

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 140

GenotypeQuality
all individuals: 1476
bin: 2.5e0
variant carriers: 17

GenotypeQuality
all individuals: 2413
bin: 3.75e1
variant carriers: 51

GenotypeQuality
all individuals: 19874
bin: 2.25e1
variant carriers: 72

GenotypeQuality
all individuals: 7964
bin: 9.75e1
variant carriers: 4719

Latino
type: Population
allele count: 553
allele frequency: 8.084795321637427e-2
allele num: 6840
num of homozygotes: 17

European (Finnish)
type: Population
allele count: 318
allele frequency: 1.461397058823529e-1
allele num: 2176
num of homozygotes: 13

East Asian
type: Population
allele count: 271
allele frequency: 4.815209665955934e-2
allele num: 5628
num of homozygotes: 9

African
type: Population
allele count: 184
allele frequency: 3.398596231991134e-2
allele num: 5414
num of homozygotes: 1

South Asian
type: Population
allele count: 655
allele frequency: 5.601162989567299e-2
allele num: 11694
num of homozygotes: 18

Other
type: Population
allele count: 36
allele frequency: 8.071748878923767e-2
allele num: 446
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3285
allele frequency: 8.786241574836846e-2
allele num: 37388
num of homozygotes: 103

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.019e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 1.103e0

DP
type: SiteQuality
SIO_000300: 8.10422e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

QD
type: SiteQuality
SIO_000300: 1.423e1

GenotypeQuality
all individuals: 344
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4901
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.883948756593821e-4
allele num: 5308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.327e0

DP
type: SiteQuality
SIO_000300: 8.03264e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 1.639e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

GenotypeQuality
all individuals: 294
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1173
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4064
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.749169144656288e-4
allele num: 11434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.79e-1

QD
type: SiteQuality
SIO_000300: 1.048e1

DP
type: SiteQuality
SIO_000300: 8.1674e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23176
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2380
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.399e-1

DP
type: SiteQuality
SIO_000300: 8.37428e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 7.813e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.515e1

GenotypeQuality
all individuals: 626
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17026
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 713
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variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1004
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.469745616201531e-5
allele num: 40490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

FS
type: SiteQuality
SIO_000300: 1.957e0

DP
type: SiteQuality
SIO_000300: 8.57058e5

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 1

GenotypeQuality
all individuals: 832
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.407202349429493e-5
allele num: 41542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

FS
type: SiteQuality
SIO_000300: 1.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

DP
type: SiteQuality
SIO_000300: 8.77769e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.556e1

VQSLOD
type: SiteQuality
SIO_000300: 5.05e-1

GenotypeQuality
all individuals: 894
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.378800133212808e-5
allele num: 42038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.083e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

FS
type: SiteQuality
SIO_000300: 8.143000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

DP
type: SiteQuality
SIO_000300: 8.91579e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

GenotypeQuality
all individuals: 302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.635578583765112e-5
allele num: 11580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42038
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

FS
type: SiteQuality
SIO_000300: 8.143000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

DP
type: SiteQuality
SIO_000300: 8.91579e5

GenotypeQuality
all individuals: 19992
bin: 6.25e1
variant carriers: 17

GenotypeQuality
all individuals: 612
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 236
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 21512
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1066
bin: 9.75e1
variant carriers: 1047

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 22

GenotypeQuality
all individuals: 2805
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2936
bin: 3.25e1
variant carriers: 9

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1690
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 939
bin: 5.75e1
variant carriers: 20

African
type: Population
allele count: 870
allele frequency: 1.46120255290561e-1
allele num: 5954
num of homozygotes: 40

Other
type: Population
allele count: 8
allele frequency: 1.58102766798419e-2
allele num: 506
num of homozygotes: 0

Latino
type: Population
allele count: 78
allele frequency: 1.027126678957071e-2
allele num: 7594
num of homozygotes: 0

South Asian
type: Population
allele count: 51
allele frequency: 4.401864319005696e-3
allele num: 11586
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2684
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.295978905735003e-4
allele num: 6068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 163
allele frequency: 3.79705553484905e-3
allele num: 42928
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

DP
type: SiteQuality
SIO_000300: 9.14616e5

FS
type: SiteQuality
SIO_000300: 1.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
all individuals: 489
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21512
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.329481923220276e-5
allele num: 42928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.14e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.14616e5

GenotypeQuality
all individuals: 604
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.256687957048968e-5
allele num: 43212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.623663332183511e-5
allele num: 11596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.286e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

DP
type: SiteQuality
SIO_000300: 9.1734e5

VQSLOD
type: SiteQuality
SIO_000300: -2.97e-2

FS
type: SiteQuality
SIO_000300: 1.0662e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

GenotypeQuality
all individuals: 2760
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.904170118751726e-5
allele num: 43452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.74e-1

FS
type: SiteQuality
SIO_000300: 3.238e0

QD
type: SiteQuality
SIO_000300: 1.744e1

DP
type: SiteQuality
SIO_000300: 9.21582e5

GenotypeQuality
all individuals: 20817
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.237036374211445e-5
allele num: 44702
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.576329331046312e-5
allele num: 11660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.610305958132045e-4
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.53658e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.903e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 8.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

GenotypeQuality
all individuals: 2244
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 23826
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.249375312343828e-4
allele num: 8004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45072
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 1.544e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.53502e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 368
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
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variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
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variant carriers: 0

GenotypeQuality
all individuals: 435
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45346
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.493143854400399e-4
allele num: 8022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

FS
type: SiteQuality
SIO_000300: 1.2044e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.122e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

DP
type: SiteQuality
SIO_000300: 9.55966e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.567e0

QD
type: SiteQuality
SIO_000300: 1.58e1

MQ
type: SiteQuality
SIO_000300: 5.901e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.302e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.174e1

FS
type: SiteQuality
SIO_000300: 8.047000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 1.064237e6

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13096
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.15169463639355e-3
allele num: 6078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.071067e6

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 5.364e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.077921e6

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.161e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

African
type: Population
allele count: 1
allele frequency: 1.639344262295082e-4
allele num: 6100
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.534683855125844e-4
allele num: 13032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7058
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.276867418599702e-3
allele num: 9398
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.602564102564103e-3
allele num: 624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.161e1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

DP
type: SiteQuality
SIO_000300: 1.077921e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.914901765539428e-5
allele num: 52222
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.803e1

QD
type: SiteQuality
SIO_000300: 6.86e0

FS
type: SiteQuality
SIO_000300: 1.503e0

DP
type: SiteQuality
SIO_000300: 1.104795e6

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.218e0

VQSLOD
type: SiteQuality
SIO_000300: -2.963e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.168e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 5.682e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

DP
type: SiteQuality
SIO_000300: 1.120705e6

MQ
type: SiteQuality
SIO_000300: 5.89e1

QD
type: SiteQuality
SIO_000300: 5.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -2.637e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

QD
type: SiteQuality
SIO_000300: 1.128e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 7.182e0

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.111351e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.885191610156126e-5
allele num: 12682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53312
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.181e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

QD
type: SiteQuality
SIO_000300: 5.95e0

FS
type: SiteQuality
SIO_000300: 1.527e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

DP
type: SiteQuality
SIO_000300: 1.112048e6