18-12794241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794241
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794241
    reference: chr 18
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7728A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+142A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+142A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.*36A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+142A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.*36A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+142A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+142A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5833
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

18-12794245-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794245
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794244
    reference: chr 18
allele count: 1
allele frequency: 8.272530236098013e-6
allele num: 120882
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.*31delC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.*31delC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+137delC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+137delC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+137delC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+137delC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7723delC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+137delC
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5833
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32937
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: AG
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

18-12794247-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794247
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794247
    reference: chr 18
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+136A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+136A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7722A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+136A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+136A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.*30A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.*30A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+136A>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

18-12794256-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794256
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794256
    reference: chr 18
allele count: 11
allele frequency: 9.086403436312572e-5
allele num: 121060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+127A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+127A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7713A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.*21A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+127A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+127A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+127A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11984
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26721
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

18-12794260-T-TGGGCAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794260
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794268
    reference: chr 18
allele count: 7
allele frequency: 5.777961205117623e-5
allele num: 121150
alternate allele: TGGGCAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.*9_*16dupTTTTGCCC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.*9_*16dupTTTTGCCC
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12012
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26852
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

18-12794275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794275
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794275
    reference: chr 18
allele count: 3
allele frequency: 2.472513887286333e-5
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7694C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+108C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+108C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.*2C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+108C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+108C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+108C>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

18-12794280-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794280
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794280
    reference: chr 18
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+103A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+103A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1245A>G
  hgvsp: ENST00000309660.5:c.1245A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+103A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+103A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1158A>G
  hgvsp: ENST00000591497.1:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7689A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+103A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5835
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu415Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

18-12794282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794282
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794282
    reference: chr 18
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7687C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+101C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1243C>T
  hgvsp: ENST00000309660.5:c.1243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+101C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+101C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+101C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1156C>T
  hgvsp: ENST00000591497.1:c.1156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+101C>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu415Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

18-12794282-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794282
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794282
    reference: chr 18
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+101C>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+101C>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+101C>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7687C>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1156C>A
  hgvsp: ENSP00000467823.1:p.Leu386Ile
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1243C>A
  hgvsp: ENSP00000311857.3:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+101C>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+101C>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu415Ile
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-12794296-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794296
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794296
    reference: chr 18
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+87T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1142T>C
  hgvsp: ENSP00000467823.1:p.Phe381Ser
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+87T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+87T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+87T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+87T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7673T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1229T>C
  hgvsp: ENSP00000311857.3:p.Phe410Ser
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe410Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

18-12794304-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794304
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794304
    reference: chr 18
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+79A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+79A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1221A>G
  hgvsp: ENST00000309660.5:c.1221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+79A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7665A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1134A>G
  hgvsp: ENST00000591497.1:c.1134A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+79A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+79A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr407Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

18-12794309-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794309
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794309
    reference: chr 18
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7660T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1129T>A
  hgvsp: ENSP00000467823.1:p.Trp377Arg
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+74T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+74T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+74T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+74T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1216T>A
  hgvsp: ENSP00000311857.3:p.Trp406Arg
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+74T>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp406Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

18-12794318-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794318
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794318
    reference: chr 18
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7651T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+65T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+65T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1120T>A
  hgvsp: ENSP00000467823.1:p.Phe374Ile
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1207T>A
  hgvsp: ENSP00000311857.3:p.Phe403Ile
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+65T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+65T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+65T>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe403Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

18-12794321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794321
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794321
    reference: chr 18
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+62G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+62G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1117G>A
  hgvsp: ENSP00000467823.1:p.Ala373Thr
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+62G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+62G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1204G>A
  hgvsp: ENSP00000311857.3:p.Ala402Thr
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+62G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7648G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala402Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

18-12794322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794322
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794322
    reference: chr 18
allele count: 10
allele frequency: 8.23641814647646e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+61C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+61C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1116C>T
  hgvsp: ENST00000591497.1:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+61C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+61C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1203C>T
  hgvsp: ENST00000309660.5:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7647C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+61C>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 27185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly401Gly
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/18-12794327-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794327
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794327
    reference: chr 18
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1111G>T
  hgvsp: ENSP00000467823.1:p.Val371Phe
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+56G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1198G>T
  hgvsp: ENSP00000311857.3:p.Val400Phe
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+56G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7642G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+56G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+56G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+56G>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val400Phe
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

18-12794328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794328
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794328
    reference: chr 18
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+55G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+55G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1197G>A
  hgvsp: ENST00000309660.5:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+55G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1110G>A
  hgvsp: ENST00000591497.1:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+55G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+55G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7641G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5821
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu399Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/18-12794340-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794340
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794340
    reference: chr 18
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+43G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+43G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1098G>T
  hgvsp: ENSP00000467823.1:p.Met366Ile
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+43G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+43G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1185G>T
  hgvsp: ENSP00000311857.3:p.Met395Ile
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7629G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+43G>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5821
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met395Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/18-12794346-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794346
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794346
    reference: chr 18
allele count: 10
allele frequency: 8.23641814647646e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+37G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+37G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7623G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+37G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+37G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+37G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1092G>T
  hgvsp: ENST00000591497.1:c.1092G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1179G>T
  hgvsp: ENST00000309660.5:c.1179G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5829
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 34605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly393Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

18-12794347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794347
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794347
    reference: chr 18
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1178G>A
  hgvsp: ENSP00000311857.3:p.Gly393Glu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+36G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+36G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+36G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+36G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7622G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+36G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1091G>A
  hgvsp: ENSP00000467823.1:p.Gly364Glu
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34610
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly393Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

18-12794352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794352
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794352
    reference: chr 18
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1173G>A
  hgvsp: ENST00000309660.5:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1086G>A
  hgvsp: ENST00000591497.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+31G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+31G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7617G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+31G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+31G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+31G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys391Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

18-12794357-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794357
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794357
    reference: chr 18
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+26A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1168A>G
  hgvsp: ENSP00000311857.3:p.Thr390Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+26A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1081A>G
  hgvsp: ENSP00000467823.1:p.Thr361Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+26A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+26A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7612A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+26A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5815
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Thr390Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

18-12794358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794358
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794358
    reference: chr 18
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+25C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+25C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1167C>T
  hgvsp: ENST00000309660.5:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1080C>T
  hgvsp: ENST00000591497.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+25C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+25C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7611C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+25C>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu389Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

18-12794363-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794363
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794363
    reference: chr 18
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+20A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+20A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7606A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+20A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1075A>G
  hgvsp: ENSP00000467823.1:p.Ile359Val
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+20A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1162A>G
  hgvsp: ENSP00000311857.3:p.Ile388Val
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+20A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34608
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile388Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

18-12794365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794365
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794365
    reference: chr 18
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+18C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7604C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+18C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1160C>T
  hgvsp: ENSP00000311857.3:p.Pro387Leu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+18C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1073C>T
  hgvsp: ENSP00000467823.1:p.Pro358Leu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+18C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+18C>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9974
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34602
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro387Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

18-12794365-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794365
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794365
    reference: chr 18
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+18C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7604C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+18C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1160C>G
  hgvsp: ENSP00000311857.3:p.Pro387Arg
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+18C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+18C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1073C>G
  hgvsp: ENSP00000467823.1:p.Pro358Arg
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+18C>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro387Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

18-12794372-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794372
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794372
    reference: chr 18
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7597T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1153T>C
  hgvsp: ENSP00000311857.3:p.Trp385Arg
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+11T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1066T>C
  hgvsp: ENSP00000467823.1:p.Trp356Arg
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+11T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+11T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+11T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+11T>C
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9979
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp385Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS

18-12794373-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794373
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794373
    reference: chr 18
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7596T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+10T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+10T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1065T>C
  hgvsp: ENST00000591497.1:c.1065T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1152T>C
  hgvsp: ENST00000309660.5:c.1152T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+10T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+10T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+10T>C
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5806
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9977
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr384Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

18-12794374-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794374
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794374
    reference: chr 18
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1142+9A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7595A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.417+9A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.387+9A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1151A>G
  hgvsp: ENSP00000311857.3:p.Tyr384Cys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.286+9A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1064A>G
  hgvsp: ENSP00000467823.1:p.Tyr355Cys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1211+9A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5805
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr384Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/18-12794395-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794395
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794395
    reference: chr 18
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1199G>T
  hgvsp: ENSP00000466936.1:p.Arg400Leu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7574G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.274G>T
  hgvsp: ENSP00000464937.1:p.Arg92Leu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1043G>T
  hgvsp: ENSP00000467823.1:p.Arg348Leu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.405G>T
  hgvsp: ENSP00000467043.1:p.Arg136Leu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.375G>T
  hgvsp: ENSP00000464719.1:p.Arg126Leu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1130G>T
  hgvsp: ENSP00000320298.3:p.Arg377Leu
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1130G>T
  hgvsp: ENSP00000311857.3:p.Arg377Leu
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34597
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5803
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg377Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

18-12794409-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794409
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794409
    reference: chr 18
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.361A>C
  hgvsp: ENST00000585666.1:c.361A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.391A>C
  hgvsp: ENST00000587703.1:c.391A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7560A>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1116A>C
  hgvsp: ENST00000309660.5:c.1116A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.260A>C
  hgvsp: ENST00000591901.1:c.260A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1029A>C
  hgvsp: ENST00000591497.1:c.1029A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1185A>C
  hgvsp: ENST00000591115.1:c.1185A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1116A>C
  hgvsp: ENST00000327283.3:c.1116A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5799
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34623
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu372Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

18-12794414-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794414
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794414
    reference: chr 18
allele count: 7
allele frequency: 5.765777638666952e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1180A>T
  hgvsp: ENSP00000466936.1:p.Arg394Trp
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7555A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.386A>T
  hgvsp: ENSP00000467043.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1024A>T
  hgvsp: ENSP00000467823.1:p.Arg342Trp
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1111A>T
  hgvsp: ENSP00000320298.3:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.356A>T
  hgvsp: ENSP00000464719.1:p.Arg120Trp
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1111A>T
  hgvsp: ENSP00000311857.3:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.255A>T
  hgvsp: ENSP00000464937.1:p.Arg86Trp
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg371Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

18-12794414-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794414
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794414
    reference: chr 18
allele count: 42
allele frequency: 3.459466583200171e-4
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1111A>G
  hgvsp: ENSP00000311857.3:p.Arg371Gly
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1180A>G
  hgvsp: ENSP00000466936.1:p.Arg394Gly
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.386A>G
  hgvsp: ENSP00000467043.1:p.Arg130Gly
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.255A>G
  hgvsp: ENSP00000464937.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1024A>G
  hgvsp: ENSP00000467823.1:p.Arg342Gly
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7555A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.356A>G
  hgvsp: ENSP00000464719.1:p.Arg120Gly
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1111A>G
  hgvsp: ENSP00000320298.3:p.Arg371Gly
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg371Gly
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

18-12794417-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794417
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794417
    reference: chr 18
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.353C>A
  hgvsp: ENSP00000464719.1:p.Gln119Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1108C>A
  hgvsp: ENSP00000311857.3:p.Gln370Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.252C>A
  hgvsp: ENSP00000464937.1:p.Gln85Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.383C>A
  hgvsp: ENSP00000467043.1:p.Gln129Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1108C>A
  hgvsp: ENSP00000320298.3:p.Gln370Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1177C>A
  hgvsp: ENSP00000466936.1:p.Gln393Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1021C>A
  hgvsp: ENSP00000467823.1:p.Gln341Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7552C>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34640
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln370Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

18-12794424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794424
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794424
    reference: chr 18
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.376G>A
  hgvsp: ENST00000587703.1:c.376G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.245G>A
  hgvsp: ENST00000591901.1:c.245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.346G>A
  hgvsp: ENST00000585666.1:c.346G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1101G>A
  hgvsp: ENST00000309660.5:c.1101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1014G>A
  hgvsp: ENST00000591497.1:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1170G>A
  hgvsp: ENST00000591115.1:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7545G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1101G>A
  hgvsp: ENST00000327283.3:c.1101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5777
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Gln367Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-12794430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794430
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794430
    reference: chr 18
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1008G>A
  hgvsp: ENST00000591497.1:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1095G>A
  hgvsp: ENST00000309660.5:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.340G>A
  hgvsp: ENST00000585666.1:c.340G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1095G>A
  hgvsp: ENST00000327283.3:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.239G>A
  hgvsp: ENST00000591901.1:c.239G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.370G>A
  hgvsp: ENST00000587703.1:c.370G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1164G>A
  hgvsp: ENST00000591115.1:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7539G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val365Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-12794432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794432
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794432
    reference: chr 18
allele count: 12
allele frequency: 9.884353069091628e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1093G>A
  hgvsp: ENSP00000320298.3:p.Val365Met
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1162G>A
  hgvsp: ENSP00000466936.1:p.Val388Met
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1006G>A
  hgvsp: ENSP00000467823.1:p.Val336Met
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.237G>A
  hgvsp: ENSP00000464937.1:p.Val80Met
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1093G>A
  hgvsp: ENSP00000311857.3:p.Val365Met
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.338G>A
  hgvsp: ENSP00000464719.1:p.Val114Met
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7537G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.368G>A
  hgvsp: ENSP00000467043.1:p.Val124Met
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val365Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

18-12794433-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794433
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794433
    reference: chr 18
allele count: 5
allele frequency: 4.118480445454845e-5
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1161G>C
  hgvsp: ENSP00000466936.1:p.Lys387Asn
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7536G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.236G>C
  hgvsp: ENSP00000464937.1:p.Lys79Asn
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1092G>C
  hgvsp: ENSP00000311857.3:p.Lys364Asn
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.367G>C
  hgvsp: ENSP00000467043.1:p.Lys123Asn
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.337G>C
  hgvsp: ENSP00000464719.1:p.Lys113Asn
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1092G>C
  hgvsp: ENSP00000320298.3:p.Lys364Asn
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.1005G>C
  hgvsp: ENSP00000467823.1:p.Lys335Asn
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys364Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

18-12794444-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794444
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794444
    reference: chr 18
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.225A>G
  hgvsp: ENSP00000464937.1:p.Thr76Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1081A>G
  hgvsp: ENSP00000311857.3:p.Thr361Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1150A>G
  hgvsp: ENSP00000466936.1:p.Thr384Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.326A>G
  hgvsp: ENSP00000464719.1:p.Thr110Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.994A>G
  hgvsp: ENSP00000467823.1:p.Thr332Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.356A>G
  hgvsp: ENSP00000467043.1:p.Thr120Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7525A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1081A>G
  hgvsp: ENSP00000320298.3:p.Thr361Ala
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr361Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

18-12794446-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794446
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794446
    reference: chr 18
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7523C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1148C>G
  hgvsp: ENSP00000466936.1:p.Thr383Ser
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1079C>G
  hgvsp: ENSP00000311857.3:p.Thr360Ser
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.223C>G
  hgvsp: ENSP00000464937.1:p.Thr75Ser
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.324C>G
  hgvsp: ENSP00000464719.1:p.Thr109Ser
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.354C>G
  hgvsp: ENSP00000467043.1:p.Thr119Ser
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1079C>G
  hgvsp: ENSP00000320298.3:p.Thr360Ser
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.992C>G
  hgvsp: ENSP00000467823.1:p.Thr331Ser
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr360Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

18-12794447-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794447
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794447
    reference: chr 18
allele count: 12
allele frequency: 9.885493038965319e-5
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1147A>G
  hgvsp: ENSP00000466936.1:p.Thr383Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1078A>G
  hgvsp: ENSP00000320298.3:p.Thr360Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.991A>G
  hgvsp: ENSP00000467823.1:p.Thr331Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.353A>G
  hgvsp: ENSP00000467043.1:p.Thr119Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.222A>G
  hgvsp: ENSP00000464937.1:p.Thr75Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.323A>G
  hgvsp: ENSP00000464719.1:p.Thr109Ala
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7522A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1078A>G
  hgvsp: ENSP00000311857.3:p.Thr360Ala
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9977
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr360Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

18-12794455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794455
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794455
    reference: chr 18
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1070G>A
  hgvsp: ENSP00000311857.3:p.Arg357Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.983G>A
  hgvsp: ENSP00000467823.1:p.Arg328Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7514G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1070G>A
  hgvsp: ENSP00000320298.3:p.Arg357Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.214G>A
  hgvsp: ENSP00000464937.1:p.Arg72Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.315G>A
  hgvsp: ENSP00000464719.1:p.Arg106Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1139G>A
  hgvsp: ENSP00000466936.1:p.Arg380Lys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.345G>A
  hgvsp: ENSP00000467043.1:p.Arg116Lys
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg357Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

18-12794464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794464
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794464
    reference: chr 18
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7505G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1061G>A
  hgvsp: ENSP00000311857.3:p.Arg354Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.974G>A
  hgvsp: ENSP00000467823.1:p.Arg325Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1061G>A
  hgvsp: ENSP00000320298.3:p.Arg354Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.205G>A
  hgvsp: ENSP00000464937.1:p.Arg69Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.336G>A
  hgvsp: ENSP00000467043.1:p.Arg113Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.306G>A
  hgvsp: ENSP00000464719.1:p.Arg103Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1130G>A
  hgvsp: ENSP00000466936.1:p.Arg377Gln
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34578
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg354Gln
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

18-12794469-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794469
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794469
    reference: chr 18
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.969T>C
  hgvsp: ENST00000591497.1:c.969T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.331T>C
  hgvsp: ENST00000587703.1:c.331T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1056T>C
  hgvsp: ENST00000327283.3:c.1056T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1056T>C
  hgvsp: ENST00000309660.5:c.1056T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.200T>C
  hgvsp: ENST00000591901.1:c.200T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7500T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.301T>C
  hgvsp: ENST00000585666.1:c.301T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1125T>C
  hgvsp: ENST00000591115.1:c.1125T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg352Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

18-12794471-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794471
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794471
    reference: chr 18
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1054C>T
  hgvsp: ENSP00000311857.3:p.Arg352Cys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1054C>T
  hgvsp: ENSP00000320298.3:p.Arg352Cys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7498C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.329C>T
  hgvsp: ENSP00000467043.1:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.299C>T
  hgvsp: ENSP00000464719.1:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.967C>T
  hgvsp: ENSP00000467823.1:p.Arg323Cys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1123C>T
  hgvsp: ENSP00000466936.1:p.Arg375Cys
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.198C>T
  hgvsp: ENSP00000464937.1:p.Arg67Cys
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg352Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

18-12794475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794475
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794475
    reference: chr 18
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.325G>A
  hgvsp: ENST00000587703.1:c.325G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.295G>A
  hgvsp: ENST00000585666.1:c.295G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.963G>A
  hgvsp: ENST00000591497.1:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1050G>A
  hgvsp: ENST00000309660.5:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7494G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1050G>A
  hgvsp: ENST00000327283.3:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1119G>A
  hgvsp: ENST00000591115.1:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.194G>A
  hgvsp: ENST00000591901.1:c.194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg350Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

18-12794476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794476
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794476
    reference: chr 18
allele count: 2
allele frequency: 1.651227687785869e-5
allele num: 121122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.294G>A
  hgvsp: ENSP00000464719.1:p.Arg99Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7493G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1049G>A
  hgvsp: ENSP00000320298.3:p.Arg350Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.324G>A
  hgvsp: ENSP00000467043.1:p.Arg109Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.962G>A
  hgvsp: ENSP00000467823.1:p.Arg321Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1049G>A
  hgvsp: ENSP00000311857.3:p.Arg350Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1118G>A
  hgvsp: ENSP00000466936.1:p.Arg373Gln
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.193G>A
  hgvsp: ENSP00000464937.1:p.Arg65Gln
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg350Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

18-12794484-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794484
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794484
    reference: chr 18
allele count: 1
allele frequency: 8.279516476237788e-6
allele num: 120780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316T>C
  hgvsp: ENST00000587703.1:c.316T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185T>C
  hgvsp: ENST00000591901.1:c.185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041T>C
  hgvsp: ENST00000327283.3:c.1041T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110T>C
  hgvsp: ENST00000591115.1:c.1110T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954T>C
  hgvsp: ENST00000591497.1:c.954T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7485T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286T>C
  hgvsp: ENST00000585666.1:c.286T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041T>C
  hgvsp: ENST00000309660.5:c.1041T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11708
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1041T>C
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

18-12794485-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794485
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794483
    reference: chr 18
allele count: 1
allele frequency: 8.279653579294243e-6
allele num: 120778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185-3_185-2delTA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041-3_1041-2delTA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316-3_316-2delTA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286-3_286-2delTA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7482_1040+7483delTA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110-3_1110-2delTA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954-3_954-2delTA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041-3_1041-2delTA
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1041-3_1041-2delTA
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: CTA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/18-12794487-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794487
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794487
    reference: chr 18
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041-3T>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110-3T>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185-3T>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041-3T>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7482T>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316-3T>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954-3T>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286-3T>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1041-3T>G
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

18-12794488-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794488
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794488
    reference: chr 18
allele count: 103
allele frequency: 8.536949242449358e-4
allele num: 120652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7481A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041-4A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286-4A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185-4A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316-4A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110-4A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954-4A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041-4A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26597
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11510
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1041-4A>G
num of homozygotes: 1
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-12794508-AAAGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794508
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794504
    reference: chr 18
allele count: 1
allele frequency: 8.382510729613734e-6
allele num: 119296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316-28_316-25delCCTT
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7457_1040+7460delCCTT
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185-28_185-25delCCTT
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954-28_954-25delCCTT
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110-28_1110-25delCCTT
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286-28_286-25delCCTT
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041-28_1041-25delCCTT
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041-28_1041-25delCCTT
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5679
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3205
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: AAAGG
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

18-12794524-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794524
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794524
    reference: chr 18
allele count: 1
allele frequency: 8.464820207218798e-6
allele num: 118136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110-40C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316-40C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7445C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954-40C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185-40C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041-40C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286-40C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041-40C>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10805
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

18-12794527-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794527
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794527
    reference: chr 18
allele count: 5
allele frequency: 4.251266877529504e-5
allele num: 117612
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954-43G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7442G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110-43G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286-43G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316-43G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185-43G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041-43G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041-43G>C
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5522
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4611
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5696
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4682
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14597
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

18-12794527-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794527
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794527
    reference: chr 18
allele count: 24
allele frequency: 2.040608101214162e-4
allele num: 117612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954-43G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316-43G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286-43G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7442G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185-43G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041-43G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041-43G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110-43G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11896
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5522
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14597
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4682
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

18-12794535-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12794535
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12794535
    reference: chr 18
allele count: 1
allele frequency: 8.577359202648689e-6
allele num: 116586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1041-51C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.316-51C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.185-51C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.954-51C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+7434C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.286-51C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1110-51C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1041-51C>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

18-12801766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801766
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801766
    reference: chr 18
allele count: 1
allele frequency: 2.16076058772688e-4
allele num: 4628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+203G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+203G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+203G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+203G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+203G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+203G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+203G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+203G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

18-12801774-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801774
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801774
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 4700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+195G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+195G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+195G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+195G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+195G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+195G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+195G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+195G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10265
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

18-12801783-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801783
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801783
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 5184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+186C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+186C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+186C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+186C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+186C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+186C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+186C>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+186C>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12492
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

18-12801806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801806
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801806
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 7436
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+163C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+163C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+163C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+163C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+163C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+163C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+163C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+163C>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19880
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-12801816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801816
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801816
    reference: chr 18
allele count: 1
allele frequency: 1.032631144155308e-4
allele num: 9684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+153G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+153G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+153G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+153G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+153G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+153G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+153G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+153G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

18-12801817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801817
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801817
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 9948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+152G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+152G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+152G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+152G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+152G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+152G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+152G>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+152G>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24091
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-12801818-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801818
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801818
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 10300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+151A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+151A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+151A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+151A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+151A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+151A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+151A>G
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+151A>G
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24505
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

18-12801824-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801824
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801824
    reference: chr 18
allele count: 6
allele frequency: 4.887585532746823e-4
allele num: 12276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+145A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+145A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+145A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+145A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+145A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+145A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+145A>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+145A>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27116
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/18-12801827-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801827
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801827
    reference: chr 18
allele count: 1
allele frequency: 7.396449704142012e-5
allele num: 13520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+142G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+142G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+142G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+142G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+142G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+142G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+142G>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+142G>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28425
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

18-12801828-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801828
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801828
    reference: chr 18
allele count: 117
allele frequency: 8.238276299112801e-3
allele num: 14202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+141T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+141T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+141T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+141T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+141T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+141T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+141T>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+141T>C
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 20907
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28926
  bin: 7.5e0
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.75e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20381
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 25855
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

18-12801829-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801829
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801829
    reference: chr 18
allele count: 6
allele frequency: 4.124845318300564e-4
allele num: 14546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+140T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+140T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+140T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+140T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+140T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+140T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+140T>A
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+140T>A
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29235
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

18-12801833-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801833
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801832
    reference: chr 18
allele count: 1020
allele frequency: 5.736137667304015e-2
allele num: 17782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+135delA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+135delA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+135delA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+135delA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+135delA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+135delA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+135delA
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+135delA
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 1.25e1
  variant carriers: 598
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 30819
  bin: 7.5e0
  variant carriers: 713
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17971
  bin: 2.5e0
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27119
  bin: 2.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 6.75e1
  variant carriers: 4
num of homozygotes: 21
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: GT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

18-12801846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801846
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801846
    reference: chr 18
allele count: 6
allele frequency: 2.311960542540074e-4
allele num: 25952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+123C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+123C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+123C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+123C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+123C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+123C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+123C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+123C>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33598
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11714
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

18-12801847-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801847
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801847
    reference: chr 18
allele count: 1
allele frequency: 3.750093752343808e-5
allele num: 26666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+122G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+122G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+122G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+122G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+122G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+122G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+122G>C
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+122G>C
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11257
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

18-12801848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12801848
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 12801848
    reference: chr 18
allele count: 4
allele frequency: 1.391401140948936e-4
allele num: 28748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467823
  ensembl transcript: ENST00000591497
  gene symbol: PTPN2
  hgvsc: ENST00000591497.1:c.953+121C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320298
  ensembl transcript: ENST00000327283
  gene symbol: PTPN2
  hgvsc: ENST00000327283.3:c.1040+121C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464719
  ensembl transcript: ENST00000585666
  gene symbol: PTPN2
  hgvsc: ENST00000585666.1:c.285+121C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000311857
  ensembl transcript: ENST00000309660
  gene symbol: PTPN2
  hgvsc: ENST00000309660.5:c.1040+121C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000466936
  ensembl transcript: ENST00000591115
  gene symbol: PTPN2
  hgvsc: ENST00000591115.1:c.1109+121C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000464937
  ensembl transcript: ENST00000591901
  gene symbol: PTPN2
  hgvsc: ENST00000591901.1:c.184+121C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000320546
  ensembl transcript: ENST00000353319
  gene symbol: PTPN2
  hgvsc: ENST00000353319.4:c.1040+121C>T
  variant of: http://identifiers.org/hgnc/9650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175354
  ensembl protein: ENSP00000467043
  ensembl transcript: ENST00000587703
  gene symbol: PTPN2
  hgvsc: ENST00000587703.1:c.315+121C>T
  variant of: http://identifiers.org/hgnc/9650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10771
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33639
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32589
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

QD
type: SiteQuality
SIO_000300: 1.409e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.813031e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 8.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

MQ
type: SiteQuality
SIO_000300: 6.065e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.817302e6

QD
type: SiteQuality
SIO_000300: 1.911e1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 780
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9742
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.409e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 3.6071e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 9.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e0

DP
type: SiteQuality
SIO_000300: 1.818891e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5842
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1098
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.716326779826596e-4
allele num: 16378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

DP
type: SiteQuality
SIO_000300: 1.827603e6

FS
type: SiteQuality
SIO_000300: 9.811e0

VQSLOD
type: SiteQuality
SIO_000300: -2.408e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

GenotypeQuality
all individuals: 144
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5840
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.0508301558231e-4
allele num: 66614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.989e1

QD
type: SiteQuality
SIO_000300: 6.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.889e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 1.831058e6

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5836
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

QD
type: SiteQuality
SIO_000300: 1.007e1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 7.138e0

DP
type: SiteQuality
SIO_000300: 1.836064e6

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.204e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.289999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.836639e6

QD
type: SiteQuality
SIO_000300: 1.508e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5835
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9958
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34524
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.255e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

DP
type: SiteQuality
SIO_000300: 1.83698e6

QD
type: SiteQuality
SIO_000300: 1.43e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9958
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34524
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5835
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.255e0

QD
type: SiteQuality
SIO_000300: 1.43e1

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 1.83698e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9971
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5836
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.928e0

VQSLOD
type: SiteQuality
SIO_000300: 4.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

DP
type: SiteQuality
SIO_000300: 1.837937e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -1.048e0

QD
type: SiteQuality
SIO_000300: 1.384e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5832
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.597e0

QD
type: SiteQuality
SIO_000300: 1.263e1

DP
type: SiteQuality
SIO_000300: 1.837825e6

GenotypeQuality
all individuals: 2019
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34597
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.625e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

FS
type: SiteQuality
SIO_000300: 3.238e0

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

DP
type: SiteQuality
SIO_000300: 1.837832e6

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5831
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

DP
type: SiteQuality
SIO_000300: 1.837862e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 1.0038e1

MQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

QD
type: SiteQuality
SIO_000300: 1.066e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5832
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

FS
type: SiteQuality
SIO_000300: 2.452e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.837973e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34604
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5832
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.838417e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.056e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5823
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3441
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.371e0

DP
type: SiteQuality
SIO_000300: 1.83783e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.079e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.557e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 7.429e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.837778e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 4.692e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.478e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.681e0

QD
type: SiteQuality
SIO_000300: 1.141e1

GenotypeQuality
all individuals: 9974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.837818e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.753e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 5.173e0

GenotypeQuality
all individuals: 9973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.056201550387597e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.838262e6

QD
type: SiteQuality
SIO_000300: 1.129e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

FS
type: SiteQuality
SIO_000300: 3.268e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5819
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.663e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.062e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: -1.338e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.632e0

FS
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.837658e6

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5819
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34609
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.748e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.831e0

QD
type: SiteQuality
SIO_000300: 2.81e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

DP
type: SiteQuality
SIO_000300: 1.837885e6

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34608
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.879e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.266e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.584e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.03e-1

DP
type: SiteQuality
SIO_000300: 1.837691e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 9974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5813
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.44e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.837606e6

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.275e0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.837494e6

MQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.507e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5813
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.041e1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

FS
type: SiteQuality
SIO_000300: 1.105e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 1.837785e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5813
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.105e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

QD
type: SiteQuality
SIO_000300: 1.041e1

DP
type: SiteQuality
SIO_000300: 1.837785e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5808
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

DP
type: SiteQuality
SIO_000300: 1.837438e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.198e1

FS
type: SiteQuality
SIO_000300: 8.045999999999999e0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e0

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 1.837302e6

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

FS
type: SiteQuality
SIO_000300: 2.457e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.308e1

DP
type: SiteQuality
SIO_000300: 1.83748e6

QD
type: SiteQuality
SIO_000300: 1.299e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 9971
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.837383e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.144e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 1.016e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.25e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.46e-1

DP
type: SiteQuality
SIO_000300: 1.837332e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5826
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 34607
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491983577571999e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.198e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 1.840144e6

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5826
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 1088
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 2.362204724409449e-3
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

QD
type: SiteQuality
SIO_000300: 1.198e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 1.840144e6

GenotypeQuality
all individuals: 9985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5778
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.403e0

VQSLOD
type: SiteQuality
SIO_000300: -2.607e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.796e1

FS
type: SiteQuality
SIO_000300: 9.28e-1

QD
type: SiteQuality
SIO_000300: 1.753e1

DP
type: SiteQuality
SIO_000300: 1.837107e6

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

DP
type: SiteQuality
SIO_000300: 1.836933e6

QD
type: SiteQuality
SIO_000300: 1.107e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 1.205e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.815e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5775
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9983
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.018e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.903e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.836842e6

VQSLOD
type: SiteQuality
SIO_000300: -4.463e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5777
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 34641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.609840476648087e-4
allele num: 10406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.334e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.837315e6

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 1.197e1

GenotypeQuality
all individuals: 34643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5765
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.595e0

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

QD
type: SiteQuality
SIO_000300: 1.213e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.83684e6

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5762
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9980
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.285e0

DP
type: SiteQuality
SIO_000300: 1.836269e6

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 9.25e0

VQSLOD
type: SiteQuality
SIO_000300: -3.871e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.463e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5761
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.311e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.133e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.836407e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5768
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.662628709872804e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.443e0

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 1.836981e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 3434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5755
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9975
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

FS
type: SiteQuality
SIO_000300: 8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 1.835873e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 1.444e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.187e0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5750
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

DP
type: SiteQuality
SIO_000300: 1.834955e6

QD
type: SiteQuality
SIO_000300: 1.428e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 2.738e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
all individuals: 1087
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5749
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9937
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.422e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

DP
type: SiteQuality
SIO_000300: 1.832834e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.41e0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9920
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5747
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.027e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -1.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.4e-1

DP
type: SiteQuality
SIO_000300: 1.832421e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

FS
type: SiteQuality
SIO_000300: 3.551e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5746
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.529e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

DP
type: SiteQuality
SIO_000300: 1.829655e6

FS
type: SiteQuality
SIO_000300: 2.004e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.43e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.637e0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5738
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004717406327935e-5
allele num: 66562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.361e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 1.145e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

DP
type: SiteQuality
SIO_000300: 1.829835e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

GenotypeQuality
all individuals: 693
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5730
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9692
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.265e1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

DP
type: SiteQuality
SIO_000300: 1.81569e6

FS
type: SiteQuality
SIO_000300: 6.434e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.41e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5731
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.815531e6

QD
type: SiteQuality
SIO_000300: 1.555e1

FS
type: SiteQuality
SIO_000300: 3.681e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

MQ
type: SiteQuality
SIO_000300: 6.092e1

GenotypeQuality
all individuals: 242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3365
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33299
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5727
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 868
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 1.809228e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.588e1

GenotypeQuality
all individuals: 300
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5774
bin: 9.75e1
variant carriers: 102

GenotypeQuality
all individuals: 3360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 99
allele frequency: 9.555984555984555e-3
allele num: 10360
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.609149417289963e-4
allele num: 11498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.237e0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 1.811359e6

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.351e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65436
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.512e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.032e0

QD
type: SiteQuality
SIO_000300: 1.496e1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

DP
type: SiteQuality
SIO_000300: 1.685727e6

GenotypeQuality
all individuals: 217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5672
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17834
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545308443565336e-5
allele num: 64712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.066e-1

FS
type: SiteQuality
SIO_000300: 3.076e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.61e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.91e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.53879e6

GenotypeQuality
all individuals: 3075
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4805
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.763975155279503e-5
allele num: 64400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.166e0

QD
type: SiteQuality
SIO_000300: 1.289e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 1.517313e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

GenotypeQuality
all individuals: 5696
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 3814
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4611
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4805
bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.13371266002845e-3
allele num: 11248
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.166e0

QD
type: SiteQuality
SIO_000300: 1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 1.517313e6

GenotypeQuality
all individuals: 5667
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5661
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6050
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3343
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4770
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.223690651003426e-4
allele num: 8172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.21e-1

DP
type: SiteQuality
SIO_000300: 1.494525e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.147e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6620
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26472
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.648936170212766e-4
allele num: 1504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.07e0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.148e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.84383e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.609e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

GenotypeQuality
all individuals: 463
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4717
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29099
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.98107e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.630000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.085e0

QD
type: SiteQuality
SIO_000300: 1.45e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 62
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.335e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.546e1

MQRankSum
type: SiteQuality
SIO_000300: -1.683e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.18e-2

DP
type: SiteQuality
SIO_000300: 2.1697e5

GenotypeQuality
all individuals: 82
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28802
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.08e-2

QD
type: SiteQuality
SIO_000300: 1.506e1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 2.81425e5

VQSLOD
type: SiteQuality
SIO_000300: -1.306e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.589e0

GenotypeQuality
all individuals: 25741
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19514
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.021835826930853e-4
allele num: 4946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.934e0

DP
type: SiteQuality
SIO_000300: 3.21093e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 353
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20381
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25471
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2036
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.428e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 3.26364e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 25217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2336
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -2.115e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 8.01e0

DP
type: SiteQuality
SIO_000300: 3.30706e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23406
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22412
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.342143906020558e-4
allele num: 1362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.768800497203232e-4
allele num: 6436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 2.874e0

VQSLOD
type: SiteQuality
SIO_000300: -1.665e-1

DP
type: SiteQuality
SIO_000300: 3.63915e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.263e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 1569
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21036
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.392757660167131e-4
allele num: 7180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.855e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.81605e5

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

QD
type: SiteQuality
SIO_000300: 1.017e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-2

GenotypeQuality
all individuals: 125
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1093
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1293
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1942
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 124
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2380
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.085192697768763e-3
allele num: 986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

African
type: Population
allele count: 109
allele frequency: 6.542617046818727e-2
allele num: 1666
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.831501831501832e-3
allele num: 546
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.024096385542169e-3
allele num: 166
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

DP
type: SiteQuality
SIO_000300: 3.8972e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

QD
type: SiteQuality
SIO_000300: 1.285e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 25911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19993
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 7.845188284518828e-4
allele num: 7648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.158e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

DP
type: SiteQuality
SIO_000300: 3.94144e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
all individuals: 587
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2133
bin: 1.75e1
variant carriers: 51

GenotypeQuality
all individuals: 1550
bin: 2.75e1
variant carriers: 37

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 83

GenotypeQuality
all individuals: 2383
bin: 6.25e1
variant carriers: 22

GenotypeQuality
all individuals: 17191
bin: 7.5e0
variant carriers: 21

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 58

GenotypeQuality
all individuals: 152
bin: 7.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1158
bin: 9.75e1
variant carriers: 1017

GenotypeQuality
all individuals: 187
bin: 9.25e1
variant carriers: 142

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 115

GenotypeQuality
all individuals: 1388
bin: 1.25e1
variant carriers: 23

Other
type: Population
allele count: 8
allele frequency: 4.040404040404041e-2
allele num: 198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 115
allele frequency: 5.566311713455954e-2
allele num: 2066
num of homozygotes: 1

South Asian
type: Population
allele count: 380
allele frequency: 1.227390180878553e-1
allele num: 3096
num of homozygotes: 17

European (Finnish)
type: Population
allele count: 19
allele frequency: 1.500789889415482e-2
allele num: 1266
num of homozygotes: 0

Latino
type: Population
allele count: 44
allele frequency: 3.594771241830065e-2
allele num: 1224
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 454
allele frequency: 4.88382099827883e-2
allele num: 9296
num of homozygotes: 2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.53e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.26282e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.67e0

GenotypeQuality
all individuals: 763
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 6.896551724137931e-4
allele num: 2900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.841312686461145e-4
allele num: 14078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 966
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

DP
type: SiteQuality
SIO_000300: 5.18142e5

QD
type: SiteQuality
SIO_000300: 1.342e1

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 3.33555703802535e-4
allele num: 2998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 994
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.29449e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.024e-1

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2