15-77087632-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087632
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087632
    reference: chr 15
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-137C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*600C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.807C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.761C>T
  hgvsp: ENSP00000326924.7:p.Ser254Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.761C>T
  hgvsp: ENSP00000454973.1:p.Ser254Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.170C>T
  hgvsp: ENSP00000457434.1:p.Ser57Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.761C>T
  hgvsp: ENSP00000456508.1:p.Ser254Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.474C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.219C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.761C>T
  hgvsp: ENSP00000455378.1:p.Ser254Leu
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40341
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser254Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

15-77087634-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087634
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087634
    reference: chr 15
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*598C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.759C>T
  hgvsp: ENST00000563290.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.472C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.168C>T
  hgvsp: ENST00000568549.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-139C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.759C>T
  hgvsp: ENST00000324767.7:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.217C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.759C>T
  hgvsp: ENST00000564590.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.805C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.759C>T
  hgvsp: ENST00000565970.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala253Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/15-77087644-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087644
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087644
    reference: chr 15
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.749T>G
  hgvsp: ENSP00000454973.1:p.Val250Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.749T>G
  hgvsp: ENSP00000326924.7:p.Val250Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.158T>G
  hgvsp: ENSP00000457434.1:p.Val53Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.749T>G
  hgvsp: ENSP00000455378.1:p.Val250Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.749T>G
  hgvsp: ENSP00000456508.1:p.Val250Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.795T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.207T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*588T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-149T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.462T>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val250Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

15-77087653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087653
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087653
    reference: chr 15
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.740C>T
  hgvsp: ENSP00000326924.7:p.Pro247Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.453C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.740C>T
  hgvsp: ENSP00000455378.1:p.Pro247Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.149C>T
  hgvsp: ENSP00000457434.1:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.198C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.740C>T
  hgvsp: ENSP00000456508.1:p.Pro247Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.740C>T
  hgvsp: ENSP00000454973.1:p.Pro247Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-158C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.338C>T
  hgvsp: ENSP00000456065.1:p.Pro113Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*579C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.786C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro247Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/15-77087659-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087659
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087659
    reference: chr 15
allele count: 5
allele frequency: 4.14181577203446e-5
allele num: 120720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.192G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.734G>T
  hgvsp: ENSP00000326924.7:p.Cys245Phe
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.332G>T
  hgvsp: ENSP00000456065.1:p.Cys111Phe
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-164G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.734G>T
  hgvsp: ENSP00000454973.1:p.Cys245Phe
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.143G>T
  hgvsp: ENSP00000457434.1:p.Cys48Phe
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.780G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.734G>T
  hgvsp: ENSP00000456508.1:p.Cys245Phe
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*573G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.447G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.734G>T
  hgvsp: ENSP00000455378.1:p.Cys245Phe
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys245Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

15-77087667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087667
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087667
    reference: chr 15
allele count: 3
allele frequency: 2.484801298722812e-5
allele num: 120734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.772C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.726C>T
  hgvsp: ENST00000324767.7:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-172C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.324C>T
  hgvsp: ENST00000568382.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.726C>T
  hgvsp: ENST00000565970.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*565C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.184C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.135C>T
  hgvsp: ENST00000568549.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.726C>T
  hgvsp: ENST00000564590.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.439C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.726C>T
  hgvsp: ENST00000563290.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala242Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-77087669-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087669
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087669
    reference: chr 15
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.770G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.724G>T
  hgvsp: ENSP00000456508.1:p.Ala242Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.133G>T
  hgvsp: ENSP00000457434.1:p.Ala45Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.724G>T
  hgvsp: ENSP00000455378.1:p.Ala242Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.724G>T
  hgvsp: ENSP00000326924.7:p.Ala242Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.322G>T
  hgvsp: ENSP00000456065.1:p.Ala108Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-174G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.724G>T
  hgvsp: ENSP00000454973.1:p.Ala242Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*563G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.182G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.437G>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala242Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

15-77087669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087669
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087669
    reference: chr 15
allele count: 51
allele frequency: 4.224022263082045e-4
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.724G>A
  hgvsp: ENSP00000455378.1:p.Ala242Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.133G>A
  hgvsp: ENSP00000457434.1:p.Ala45Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.724G>A
  hgvsp: ENSP00000326924.7:p.Ala242Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-174G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.322G>A
  hgvsp: ENSP00000456065.1:p.Ala108Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.724G>A
  hgvsp: ENSP00000454973.1:p.Ala242Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.770G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.182G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*563G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.724G>A
  hgvsp: ENSP00000456508.1:p.Ala242Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.437G>A
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala242Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

15-77087690-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087690
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087690
    reference: chr 15
allele count: 2
allele frequency: 1.656561640658649e-5
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.161G>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.703G>C
  hgvsp: ENSP00000456508.1:p.Ala235Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.112G>C
  hgvsp: ENSP00000457434.1:p.Ala38Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.703G>C
  hgvsp: ENSP00000326924.7:p.Ala235Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-195G>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.703G>C
  hgvsp: ENSP00000455378.1:p.Ala235Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.301G>C
  hgvsp: ENSP00000456065.1:p.Ala101Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.703G>C
  hgvsp: ENSP00000454973.1:p.Ala235Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.749G>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*542G>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.416G>C
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala235Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

15-77087693-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087693
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087693
    reference: chr 15
allele count: 6
allele frequency: 4.970014247374176e-5
allele num: 120724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.109A>G
  hgvsp: ENSP00000457434.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*539A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.700A>G
  hgvsp: ENSP00000326924.7:p.Thr234Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.413A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.746A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.700A>G
  hgvsp: ENSP00000456508.1:p.Thr234Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-198A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.158A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.298A>G
  hgvsp: ENSP00000456065.1:p.Thr100Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.700A>G
  hgvsp: ENSP00000454973.1:p.Thr234Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.700A>G
  hgvsp: ENSP00000455378.1:p.Thr234Ala
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr234Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

15-77087701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087701
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087701
    reference: chr 15
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.101C>T
  hgvsp: ENSP00000457434.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.290C>T
  hgvsp: ENSP00000456065.1:p.Thr97Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-206C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.405C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.692C>T
  hgvsp: ENSP00000326924.7:p.Thr231Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.692C>T
  hgvsp: ENSP00000455378.1:p.Thr231Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.692C>T
  hgvsp: ENSP00000454973.1:p.Thr231Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.150C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.692C>T
  hgvsp: ENSP00000456508.1:p.Thr231Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*531C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.738C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr231Ile
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

15-77087704-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087704
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087704
    reference: chr 15
allele count: 8
allele frequency: 6.628113141891332e-5
allele num: 120698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*528A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.287A>G
  hgvsp: ENSP00000456065.1:p.His96Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.98A>G
  hgvsp: ENSP00000457434.1:p.His33Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.689A>G
  hgvsp: ENSP00000326924.7:p.His230Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.689A>G
  hgvsp: ENSP00000455378.1:p.His230Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.735A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.689A>G
  hgvsp: ENSP00000456508.1:p.His230Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.689A>G
  hgvsp: ENSP00000454973.1:p.His230Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.147A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.402A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-209A>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His230Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

15-77087723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087723
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087723
    reference: chr 15
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.670G>A
  hgvsp: ENSP00000326924.7:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.670G>A
  hgvsp: ENSP00000454973.1:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.128G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.79G>A
  hgvsp: ENSP00000457434.1:p.Asp27Asn
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.670G>A
  hgvsp: ENSP00000455378.1:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-228G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.716G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.670G>A
  hgvsp: ENSP00000456508.1:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.268G>A
  hgvsp: ENSP00000456065.1:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*509G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.383G>A
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp224Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

15-77087725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087725
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087725
    reference: chr 15
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.668C>T
  hgvsp: ENSP00000326924.7:p.Ala223Val
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.77C>T
  hgvsp: ENSP00000457434.1:p.Ala26Val
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*507C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.668C>T
  hgvsp: ENSP00000455378.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.266C>T
  hgvsp: ENSP00000456065.1:p.Ala89Val
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.668C>T
  hgvsp: ENSP00000454973.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.381C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.668C>T
  hgvsp: ENSP00000456508.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.126C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-230C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.714C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala223Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

15-77087740-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087740
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087740
    reference: chr 15
allele count: 1
allele frequency: 8.30137304710199e-6
allele num: 120462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-245C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.653C>G
  hgvsp: ENSP00000455378.1:p.Thr218Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.455C>G
  hgvsp: ENSP00000455751.1:p.Thr152Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.111C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.653C>G
  hgvsp: ENSP00000456508.1:p.Thr218Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.699C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.62C>G
  hgvsp: ENSP00000457434.1:p.Thr21Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.251C>G
  hgvsp: ENSP00000456065.1:p.Thr84Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*492C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.653C>G
  hgvsp: ENSP00000454973.1:p.Thr218Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.366C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.653C>G
  hgvsp: ENSP00000326924.7:p.Thr218Arg
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr218Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

15-77087742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087742
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087742
    reference: chr 15
allele count: 3
allele frequency: 2.490742739484914e-5
allele num: 120446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.697C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.453C>T
  hgvsp: ENST00000565372.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.60C>T
  hgvsp: ENST00000568549.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.109C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-247C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.651C>T
  hgvsp: ENST00000324767.7:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.651C>T
  hgvsp: ENST00000563290.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*490C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.364C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.651C>T
  hgvsp: ENST00000565970.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.651C>T
  hgvsp: ENST00000564590.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.249C>T
  hgvsp: ENST00000568382.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro217Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-77087752-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087752
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087752
    reference: chr 15
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.641G>T
  hgvsp: ENSP00000456508.1:p.Arg214Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.641G>T
  hgvsp: ENSP00000455378.1:p.Arg214Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.687G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*480G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.443G>T
  hgvsp: ENSP00000455751.1:p.Arg148Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-257G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.641G>T
  hgvsp: ENSP00000454973.1:p.Arg214Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.239G>T
  hgvsp: ENSP00000456065.1:p.Arg80Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.641G>T
  hgvsp: ENSP00000326924.7:p.Arg214Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.99G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.354G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.50G>T
  hgvsp: ENSP00000457434.1:p.Arg17Leu
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg214Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

15-77087752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087752
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087752
    reference: chr 15
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.641G>A
  hgvsp: ENSP00000326924.7:p.Arg214His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.99G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.641G>A
  hgvsp: ENSP00000456508.1:p.Arg214His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-257G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*480G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.50G>A
  hgvsp: ENSP00000457434.1:p.Arg17His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.239G>A
  hgvsp: ENSP00000456065.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.687G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.641G>A
  hgvsp: ENSP00000455378.1:p.Arg214His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.443G>A
  hgvsp: ENSP00000455751.1:p.Arg148His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.641G>A
  hgvsp: ENSP00000454973.1:p.Arg214His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.354G>A
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg214His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

15-77087759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087759
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087759
    reference: chr 15
allele count: 4
allele frequency: 3.336113427856547e-5
allele num: 119900
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.634G>A
  hgvsp: ENSP00000454973.1:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.43G>A
  hgvsp: ENSP00000457434.1:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.634G>A
  hgvsp: ENSP00000455378.1:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.436G>A
  hgvsp: ENSP00000455751.1:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.232G>A
  hgvsp: ENSP00000456065.1:p.Ala78Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.347G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*473G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.634G>A
  hgvsp: ENSP00000326924.7:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.680G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.634G>A
  hgvsp: ENSP00000456508.1:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.92G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-264G>A
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala212Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

15-77087760-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087760
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087760
    reference: chr 15
allele count: 7
allele frequency: 5.840536661882989e-5
allele num: 119852
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.633A>C
  hgvsp: ENST00000563290.1:c.633A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.231A>C
  hgvsp: ENST00000568382.1:c.231A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.435A>C
  hgvsp: ENST00000565372.1:c.435A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.633A>C
  hgvsp: ENST00000565970.1:c.633A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.91A>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.633A>C
  hgvsp: ENST00000564590.1:c.633A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.42A>C
  hgvsp: ENST00000568549.1:c.42A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.679A>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*472A>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.633A>C
  hgvsp: ENST00000324767.7:c.633A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-265A>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.346A>C
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18138
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro211Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-77087769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087769
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087769
    reference: chr 15
allele count: 1
allele frequency: 8.405762991106703e-6
allele num: 118966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.337C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.222C>T
  hgvsp: ENST00000568382.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.624C>T
  hgvsp: ENST00000564590.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.624C>T
  hgvsp: ENST00000563290.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.426C>T
  hgvsp: ENST00000565372.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.624C>T
  hgvsp: ENST00000565970.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*463C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-274C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.624C>T
  hgvsp: ENST00000324767.7:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.82C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.33C>T
  hgvsp: ENST00000568549.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.670C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly208Gly
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

15-77087774-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087774
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087774
    reference: chr 15
allele count: 3
allele frequency: 2.54293318866869e-5
allele num: 117974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.619A>G
  hgvsp: ENSP00000456508.1:p.Thr207Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.619A>G
  hgvsp: ENSP00000454973.1:p.Thr207Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.665A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.28A>G
  hgvsp: ENSP00000457434.1:p.Thr10Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-279A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.421A>G
  hgvsp: ENSP00000455751.1:p.Thr141Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.619A>G
  hgvsp: ENSP00000455378.1:p.Thr207Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.332A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*458A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.619A>G
  hgvsp: ENSP00000326924.7:p.Thr207Ala
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.77A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.217A>G
  hgvsp: ENSP00000456065.1:p.Thr73Ala
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr207Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-77087780-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087780
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087780
    reference: chr 15
allele count: 2
allele frequency: 1.738737328951715e-5
allele num: 115026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.613G>T
  hgvsp: ENSP00000455378.1:p.Gly205Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.326G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.211G>T
  hgvsp: ENSP00000456065.1:p.Gly71Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*452G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.613G>T
  hgvsp: ENSP00000326924.7:p.Gly205Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.22G>T
  hgvsp: ENSP00000457434.1:p.Gly8Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.415G>T
  hgvsp: ENSP00000455751.1:p.Gly139Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.613G>T
  hgvsp: ENSP00000456508.1:p.Gly205Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.613G>T
  hgvsp: ENSP00000454973.1:p.Gly205Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.71G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.659G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-285G>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly205Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-77087780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087780
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087780
    reference: chr 15
allele count: 3
allele frequency: 2.608105993427573e-5
allele num: 115026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.415G>A
  hgvsp: ENSP00000455751.1:p.Gly139Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.326G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.613G>A
  hgvsp: ENSP00000454973.1:p.Gly205Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.613G>A
  hgvsp: ENSP00000455378.1:p.Gly205Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.613G>A
  hgvsp: ENSP00000456508.1:p.Gly205Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.211G>A
  hgvsp: ENSP00000456065.1:p.Gly71Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.659G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.71G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.22G>A
  hgvsp: ENSP00000457434.1:p.Gly8Ser
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*452G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-285G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.613G>A
  hgvsp: ENSP00000326924.7:p.Gly205Ser
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10872
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly205Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

15-77087785-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087785
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087785
    reference: chr 15
allele count: 39442
allele frequency: 3.546495944755157e-1
allele num: 111214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-4A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-4A>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 815
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 2.25e1
  variant carriers: 6800
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.75e1
  variant carriers: 318
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 7.5e0
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 4.25e1
  variant carriers: 1559
genotype depth: GenotypeDepth
  all individuals: 11713
  bin: 1.25e1
  variant carriers: 1736
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 471
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 1.75e1
  variant carriers: 4227
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 10024
  bin: 2.75e1
  variant carriers: 6926
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 3.75e1
  variant carriers: 3011
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 3.25e1
  variant carriers: 5019
genotype quality: GenotypeQuality
hgvs: c.612-4A>G
num of homozygotes: 7222
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

15-77087786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087786
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087786
    reference: chr 15
allele count: 7
allele frequency: 6.694848792057997e-5
allele num: 104558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-5C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22090
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.612-5C>T
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/15-77087791-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087791
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087791
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 96458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-10T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-10T>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-77087795-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087795
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087795
    reference: chr 15
allele count: 298
allele frequency: 4.084317864093637e-3
allele num: 72962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-14A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-14A>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22353
  bin: 1.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 7.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 1.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 2
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

15-77087801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087801
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087801
    reference: chr 15
allele count: 2
allele frequency: 3.371771528761211e-5
allele num: 59316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-20G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-20G>A
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

15-77087807-ATAAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087807
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087802
    reference: chr 15
allele count: 1
allele frequency: 3.262429857758058e-5
allele num: 30652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-31_658-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-31_612-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-31_612-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-31_21-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-31_70-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-31_612-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-31_210-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-31_*451-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-31_414-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-31_325-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-31_-286-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-31_612-27delATTTA
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: ATAAAT
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-77087811-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087811
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087811
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 24744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-30T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-30T>C
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13764
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-77087814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087814
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087814
    reference: chr 15
allele count: 1
allele frequency: 4.431838326537848e-5
allele num: 22564
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-33T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-33T>C
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13503
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

15-77087823-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77087823
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77087823
    reference: chr 15
allele count: 1
allele frequency: 6.006006006006006e-5
allele num: 16650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.612-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.612-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000567618
  gene symbol: SCAPER
  hgvsc: ENST00000567618.1:n.70-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000562890
  gene symbol: SCAPER
  hgvsc: ENST00000562890.1:n.325-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*451-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.21-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.612-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.612-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.658-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.414-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-286-42T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.210-42T>A
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-77092540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092540
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092540
    reference: chr 15
allele count: 1
allele frequency: 1.228410682259293e-5
allele num: 81406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.413+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.20+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.611+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.657+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.611+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-287+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.611+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.611+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.209+49C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*450+49C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-77092544-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092544
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092544
    reference: chr 15
allele count: 1
allele frequency: 1.217700494386401e-5
allele num: 82122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-287+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.20+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.657+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*450+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.611+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.413+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.611+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.611+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.611+45T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.209+45T>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18071
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

15-77092553-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092553
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092553
    reference: chr 15
allele count: 1
allele frequency: 1.175585441549892e-5
allele num: 85064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.611+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.209+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*450+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.611+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.413+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.657+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-287+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.611+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.20+36A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.611+36A>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13285
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

15-77092558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092558
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092558
    reference: chr 15
allele count: 1
allele frequency: 1.103655306374713e-5
allele num: 90608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*450+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.20+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.611+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-287+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.611+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.657+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.413+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.209+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.611+31C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.611+31C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-77092559-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092559
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092559
    reference: chr 15
allele count: 1
allele frequency: 1.088707921438836e-5
allele num: 91852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.20+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.611+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.611+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-287+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.657+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.611+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*450+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.413+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.209+30A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.611+30A>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25929
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-77092594-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092594
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092594
    reference: chr 15
allele count: 1
allele frequency: 8.372684952610603e-6
allele num: 119436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-292T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.408T>G
  hgvsp: ENSP00000455751.1:p.Asn136Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.652T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.15T>G
  hgvsp: ENSP00000457434.1:p.Asn5Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.606T>G
  hgvsp: ENSP00000454973.1:p.Asn202Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.606T>G
  hgvsp: ENSP00000456508.1:p.Asn202Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.606T>G
  hgvsp: ENSP00000455378.1:p.Asn202Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.204T>G
  hgvsp: ENSP00000456065.1:p.Asn68Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.606T>G
  hgvsp: ENSP00000326924.7:p.Asn202Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*445T>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn202Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

15-77092599-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092599
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092599
    reference: chr 15
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-297T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.601T>C
  hgvsp: ENST00000324767.7:c.601T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.601T>C
  hgvsp: ENST00000563290.1:c.601T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*440T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.601T>C
  hgvsp: ENST00000564590.1:c.601T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.199T>C
  hgvsp: ENST00000568382.1:c.199T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.403T>C
  hgvsp: ENST00000565372.1:c.403T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.10T>C
  hgvsp: ENST00000568549.1:c.10T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.601T>C
  hgvsp: ENST00000565970.1:c.601T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.647T>C
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu201Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-77092606-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092606
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092606
    reference: chr 15
allele count: 1
allele frequency: 8.309650828472188e-6
allele num: 120342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.3A>G
  hgvsp: ENST00000568549.1:c.3A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*433A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.594A>G
  hgvsp: ENST00000564590.1:c.594A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.396A>G
  hgvsp: ENST00000565372.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.594A>G
  hgvsp: ENST00000565970.1:c.594A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.594A>G
  hgvsp: ENST00000563290.1:c.594A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.192A>G
  hgvsp: ENST00000568382.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.640A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-304A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.594A>G
  hgvsp: ENST00000324767.7:c.594A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg198Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

15-77092607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092607
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092607
    reference: chr 15
allele count: 3
allele frequency: 2.4919013207077e-5
allele num: 120390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.593G>A
  hgvsp: ENSP00000455378.1:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.593G>A
  hgvsp: ENSP00000456508.1:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.593G>A
  hgvsp: ENSP00000326924.7:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*432G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.395G>A
  hgvsp: ENSP00000455751.1:p.Arg132Gln
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-305G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.593G>A
  hgvsp: ENSP00000454973.1:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.2G>A
  hgvsp: ENSP00000457434.1:p.Arg1?
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.191G>A
  hgvsp: ENSP00000456065.1:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.639G>A
  variant of: http://identifiers.org/hgnc/13081
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg1?
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

15-77092608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092608
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092608
    reference: chr 15
allele count: 2
allele frequency: 1.660384877214538e-5
allele num: 120454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.394C>T
  hgvsp: ENSP00000455751.1:p.Arg132Ter
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.592C>T
  hgvsp: ENSP00000455378.1:p.Arg198Ter
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.592C>T
  hgvsp: ENSP00000454973.1:p.Arg198Ter
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.592C>T
  hgvsp: ENSP00000326924.7:p.Arg198Ter
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-306C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*431C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457434
  ensembl transcript: ENST00000568549
  gene symbol: SCAPER
  hgvsc: ENST00000568549.1:c.1C>T
  hgvsp: ENSP00000457434.1:p.Arg1?
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.638C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.190C>T
  hgvsp: ENSP00000456065.1:p.Arg64Ter
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.592C>T
  hgvsp: ENSP00000456508.1:p.Arg198Ter
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg198Ter
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

15-77092611-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092611
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092611
    reference: chr 15
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.589G>C
  hgvsp: ENSP00000326924.7:p.Ala197Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.589G>C
  hgvsp: ENSP00000454973.1:p.Ala197Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.635G>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.391G>C
  hgvsp: ENSP00000455751.1:p.Ala131Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.187G>C
  hgvsp: ENSP00000456065.1:p.Ala63Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.589G>C
  hgvsp: ENSP00000455378.1:p.Ala197Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-309G>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.589G>C
  hgvsp: ENSP00000456508.1:p.Ala197Pro
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*428G>C
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala197Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

15-77092612-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092612
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092612
    reference: chr 15
allele count: 1
allele frequency: 8.296001327360212e-6
allele num: 120540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.390T>C
  hgvsp: ENST00000565372.1:c.390T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.634T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.588T>C
  hgvsp: ENST00000563290.1:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.186T>C
  hgvsp: ENST00000568382.1:c.186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.588T>C
  hgvsp: ENST00000565970.1:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-310T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.588T>C
  hgvsp: ENST00000324767.7:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.588T>C
  hgvsp: ENST00000564590.1:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*427T>C
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn196Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-77092614-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092614
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092614
    reference: chr 15
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.586A>G
  hgvsp: ENSP00000456508.1:p.Asn196Asp
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*425A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.632A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.586A>G
  hgvsp: ENSP00000454973.1:p.Asn196Asp
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-312A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.586A>G
  hgvsp: ENSP00000455378.1:p.Asn196Asp
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.388A>G
  hgvsp: ENSP00000455751.1:p.Asn130Asp
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.184A>G
  hgvsp: ENSP00000456065.1:p.Asn62Asp
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.586A>G
  hgvsp: ENSP00000326924.7:p.Asn196Asp
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn196Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

15-77092616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092616
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092616
    reference: chr 15
allele count: 1
allele frequency: 8.293386853323161e-6
allele num: 120578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*423C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.584C>T
  hgvsp: ENSP00000456508.1:p.Ser195Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.584C>T
  hgvsp: ENSP00000455378.1:p.Ser195Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.182C>T
  hgvsp: ENSP00000456065.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.584C>T
  hgvsp: ENSP00000454973.1:p.Ser195Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.584C>T
  hgvsp: ENSP00000326924.7:p.Ser195Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.386C>T
  hgvsp: ENSP00000455751.1:p.Ser129Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-314C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.630C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.182C>T
  hgvsp: ENST00000564177.1:c.182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4640
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser195Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS

15-77092634-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092634
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092634
    reference: chr 15
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-332A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.612A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.566A>G
  hgvsp: ENSP00000454973.1:p.Asp189Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.566A>G
  hgvsp: ENSP00000456508.1:p.Asp189Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.566A>G
  hgvsp: ENSP00000326924.7:p.Asp189Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.164A>G
  hgvsp: ENSP00000456065.1:p.Asp55Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.164A>G
  hgvsp: ENSP00000457382.1:p.Asp55Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.368A>G
  hgvsp: ENSP00000455751.1:p.Asp123Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.566A>G
  hgvsp: ENSP00000455378.1:p.Asp189Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*405A>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4606
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp189Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP

15-77092637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092637
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092637
    reference: chr 15
allele count: 4
allele frequency: 3.314441019522058e-5
allele num: 120684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.161C>T
  hgvsp: ENSP00000457382.1:p.Thr54Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.161C>T
  hgvsp: ENSP00000456065.1:p.Thr54Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.563C>T
  hgvsp: ENSP00000326924.7:p.Thr188Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.365C>T
  hgvsp: ENSP00000455751.1:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*402C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.563C>T
  hgvsp: ENSP00000454973.1:p.Thr188Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.563C>T
  hgvsp: ENSP00000455378.1:p.Thr188Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.609C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.563C>T
  hgvsp: ENSP00000456508.1:p.Thr188Ile
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-335C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4644
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr188Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-77092644-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092644
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092644
    reference: chr 15
allele count: 3
allele frequency: 2.485748375977728e-5
allele num: 120688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.358C>A
  hgvsp: ENSP00000455751.1:p.Pro120Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.154C>A
  hgvsp: ENSP00000456065.1:p.Pro52Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-342C>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.556C>A
  hgvsp: ENSP00000456508.1:p.Pro186Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.556C>A
  hgvsp: ENSP00000455378.1:p.Pro186Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.556C>A
  hgvsp: ENSP00000326924.7:p.Pro186Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.154C>A
  hgvsp: ENSP00000457382.1:p.Pro52Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.556C>A
  hgvsp: ENSP00000454973.1:p.Pro186Thr
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*395C>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.602C>A
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro186Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

15-77092647-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092647
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092647
    reference: chr 15
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.599A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.553A>G
  hgvsp: ENSP00000455378.1:p.Ser185Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.355A>G
  hgvsp: ENSP00000455751.1:p.Ser119Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.553A>G
  hgvsp: ENSP00000456508.1:p.Ser185Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.553A>G
  hgvsp: ENSP00000326924.7:p.Ser185Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.553A>G
  hgvsp: ENSP00000454973.1:p.Ser185Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-345A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.151A>G
  hgvsp: ENSP00000456065.1:p.Ser51Gly
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*392A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.151A>G
  hgvsp: ENSP00000457382.1:p.Ser51Gly
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser185Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

15-77092658-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092658
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092658
    reference: chr 15
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-356A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.344A>G
  hgvsp: ENSP00000455751.1:p.His115Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.542A>G
  hgvsp: ENSP00000326924.7:p.His181Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.588A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*381A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.542A>G
  hgvsp: ENSP00000454973.1:p.His181Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.542A>G
  hgvsp: ENSP00000456508.1:p.His181Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.140A>G
  hgvsp: ENSP00000456065.1:p.His47Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.140A>G
  hgvsp: ENSP00000457382.1:p.His47Arg
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.542A>G
  hgvsp: ENSP00000455378.1:p.His181Arg
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His181Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

15-77092661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092661
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092661
    reference: chr 15
allele count: 2
allele frequency: 1.657220509761029e-5
allele num: 120684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*378G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.539G>A
  hgvsp: ENSP00000454973.1:p.Arg180His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.137G>A
  hgvsp: ENSP00000456065.1:p.Arg46His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.585G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.539G>A
  hgvsp: ENSP00000455378.1:p.Arg180His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.539G>A
  hgvsp: ENSP00000456508.1:p.Arg180His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.137G>A
  hgvsp: ENSP00000457382.1:p.Arg46His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.539G>A
  hgvsp: ENSP00000326924.7:p.Arg180His
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-359G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.341G>A
  hgvsp: ENSP00000455751.1:p.Arg114His
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg180His
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

15-77092662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092662
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092662
    reference: chr 15
allele count: 4
allele frequency: 3.314441019522058e-5
allele num: 120684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.538C>T
  hgvsp: ENSP00000455378.1:p.Arg180Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.538C>T
  hgvsp: ENSP00000326924.7:p.Arg180Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.136C>T
  hgvsp: ENSP00000456065.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.340C>T
  hgvsp: ENSP00000455751.1:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-360C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.538C>T
  hgvsp: ENSP00000456508.1:p.Arg180Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*377C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.136C>T
  hgvsp: ENSP00000457382.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.538C>T
  hgvsp: ENSP00000454973.1:p.Arg180Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.584C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg180Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

15-77092663-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092663
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092663
    reference: chr 15
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.537A>T
  hgvsp: ENST00000324767.7:c.537A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.537A>T
  hgvsp: ENST00000564590.1:c.537A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.135A>T
  hgvsp: ENST00000568382.1:c.135A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.583A>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.339A>T
  hgvsp: ENST00000565372.1:c.339A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.135A>T
  hgvsp: ENST00000564177.1:c.135A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.537A>T
  hgvsp: ENST00000563290.1:c.537A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.537A>T
  hgvsp: ENST00000565970.1:c.537A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-361A>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*376A>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly179Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

15-77092667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092667
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092667
    reference: chr 15
allele count: 2
allele frequency: 1.657193046417977e-5
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.533C>T
  hgvsp: ENSP00000456508.1:p.Pro178Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-365C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.533C>T
  hgvsp: ENSP00000455378.1:p.Pro178Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.579C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.533C>T
  hgvsp: ENSP00000454973.1:p.Pro178Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*372C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.131C>T
  hgvsp: ENSP00000456065.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.335C>T
  hgvsp: ENSP00000455751.1:p.Pro112Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.533C>T
  hgvsp: ENSP00000326924.7:p.Pro178Leu
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.131C>T
  hgvsp: ENSP00000457382.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro178Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

15-77092673-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092673
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092673
    reference: chr 15
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*366T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.527T>A
  hgvsp: ENSP00000456508.1:p.Met176Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.329T>A
  hgvsp: ENSP00000455751.1:p.Met110Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.125T>A
  hgvsp: ENSP00000456065.1:p.Met42Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.125T>A
  hgvsp: ENSP00000457382.1:p.Met42Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.527T>A
  hgvsp: ENSP00000326924.7:p.Met176Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-371T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.527T>A
  hgvsp: ENSP00000455378.1:p.Met176Lys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.573T>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.527T>A
  hgvsp: ENSP00000454973.1:p.Met176Lys
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met176Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-77092687-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092687
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092687
    reference: chr 15
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.513G>T
  hgvsp: ENSP00000456508.1:p.Trp171Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.559G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*352G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.315G>T
  hgvsp: ENSP00000455751.1:p.Trp105Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.513G>T
  hgvsp: ENSP00000455378.1:p.Trp171Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.111G>T
  hgvsp: ENSP00000457382.1:p.Trp37Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.111G>T
  hgvsp: ENSP00000456065.1:p.Trp37Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.513G>T
  hgvsp: ENSP00000454973.1:p.Trp171Cys
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-385G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.513G>T
  hgvsp: ENSP00000326924.7:p.Trp171Cys
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Trp171Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

15-77092695-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092695
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092695
    reference: chr 15
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.103T>C
  hgvsp: ENST00000564177.1:c.103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.505T>C
  hgvsp: ENST00000564590.1:c.505T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.307T>C
  hgvsp: ENST00000565372.1:c.307T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.103T>C
  hgvsp: ENST00000568382.1:c.103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.505T>C
  hgvsp: ENST00000324767.7:c.505T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*344T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.505T>C
  hgvsp: ENST00000565970.1:c.505T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-393T>C
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.505T>C
  hgvsp: ENST00000563290.1:c.505T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.551T>C
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu169Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-77092709-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092709
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092709
    reference: chr 15
allele count: 5
allele frequency: 4.16181122024305e-5
allele num: 120140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-4G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-4G>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 8.25e1
  variant carriers: 0
hgvs: c.495-4G>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-77092709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092709
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092709
    reference: chr 15
allele count: 3
allele frequency: 2.49708673214583e-5
allele num: 120140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-4G>A
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-4G>A
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
hgvs: c.495-4G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

15-77092710-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092710
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092710
    reference: chr 15
allele count: 6
allele frequency: 4.995504046358277e-5
allele num: 120108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-5C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-5C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8749
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
hgvs: c.495-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-77092720-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092720
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092720
    reference: chr 15
allele count: 1
allele frequency: 8.366520531441385e-6
allele num: 119524
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-15A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-15A>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-77092722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092722
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092722
    reference: chr 15
allele count: 2
allele frequency: 1.678471919164792e-5
allele num: 119156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-17A>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-17A>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37838
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/15-77092725-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092725
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092725
    reference: chr 15
allele count: 1
allele frequency: 8.39278220730172e-6
allele num: 119150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-20T>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-20T>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-77092727-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092727
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092727
    reference: chr 15
allele count: 1
allele frequency: 8.400114241553686e-6
allele num: 119046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-22G>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-22G>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4642
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

15-77092729-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092729
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092729
    reference: chr 15
allele count: 8
allele frequency: 6.726532808663775e-5
allele num: 118932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-24C>G
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-24C>G
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8228
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

15-77092749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 77092749
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 77092749
    reference: chr 15
allele count: 1
allele frequency: 8.558859275235797e-6
allele num: 116838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455623
  ensembl transcript: ENST00000565507
  gene symbol: SCAPER
  hgvsc: ENST00000565507.1:c.*334-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000457382
  ensembl transcript: ENST00000564177
  gene symbol: SCAPER
  hgvsc: ENST00000564177.1:c.93-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000442190
  ensembl transcript: ENST00000538941
  gene symbol: SCAPER
  hgvsc: ENST00000538941.2:c.-403-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455751
  ensembl transcript: ENST00000565372
  gene symbol: SCAPER
  hgvsc: ENST00000565372.1:c.297-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456508
  ensembl transcript: ENST00000564590
  gene symbol: SCAPER
  hgvsc: ENST00000564590.1:c.495-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000455378
  ensembl transcript: ENST00000565970
  gene symbol: SCAPER
  hgvsc: ENST00000565970.1:c.495-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000454973
  ensembl transcript: ENST00000563290
  gene symbol: SCAPER
  hgvsc: ENST00000563290.1:c.495-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl transcript: ENST00000303521
  gene symbol: SCAPER
  hgvsc: ENST00000303521.6:n.541-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000326924
  ensembl transcript: ENST00000324767
  gene symbol: SCAPER
  hgvsc: ENST00000324767.7:c.495-44C>T
  variant of: http://identifiers.org/hgnc/13081
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140386
  ensembl protein: ENSP00000456065
  ensembl transcript: ENST00000568382
  gene symbol: SCAPER
  hgvsc: ENST00000568382.1:c.93-44C>T
  variant of: http://identifiers.org/hgnc/13081
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25283
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5920
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10680
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.953362e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

FS
type: SiteQuality
SIO_000300: 6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.403e0

QD
type: SiteQuality
SIO_000300: 9.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.924e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.953647e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 7.467e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.098e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.069e0

QD
type: SiteQuality
SIO_000300: 1.276e1

MQ
type: SiteQuality
SIO_000300: 5.853e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.96e-1

FS
type: SiteQuality
SIO_000300: 1.247e0

DP
type: SiteQuality
SIO_000300: 1.95452e6

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.084e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.192e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeDepth
all individuals: 2813
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 466
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40430
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.729e0

QD
type: SiteQuality
SIO_000300: 1.48e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.954844e6

FS
type: SiteQuality
SIO_000300: 2.3939e1

GenotypeDepth
all individuals: 19171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494678778067572e-5
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.955247e6

QD
type: SiteQuality
SIO_000300: 1.13e1

FS
type: SiteQuality
SIO_000300: 3.269e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQRankSum
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SIO_000300: 1.2e0

BaseQRankSum
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SIO_000300: -3.816e0

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

GenotypeDepth
all individuals: 225
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.954954e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

VQSLOD
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SIO_000300: 3.05e-1

ReadPosRankSum
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SIO_000300: 1.07e0

FS
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SIO_000300: 3.232e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.171e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeDepth
all individuals: 7975
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 1.959124e6

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 1.127e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeDepth
all individuals: 505
bin: 9.75e1
variant carriers: 37

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10689
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40454
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 384
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 51

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 44
allele frequency: 4.489795918367347e-3
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.323763403666552e-4
allele num: 11564
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

FS
type: SiteQuality
SIO_000300: 1.127e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.195e1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.959124e6

GenotypeDepth
all individuals: 469
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variant carriers: 2

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2277
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
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SIO_000300: 1.211e1

DP
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SIO_000300: 1.953505e6

ReadPosRankSum
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SIO_000300: 3.06e-1

ClippingRankSum
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SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
SIO_000300: 2.658e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 9.75e1
variant carriers: 6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49265719594797e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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DP
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MQRankSum
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SIO_000300: 4.24e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
SIO_000300: 1.614e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
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VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2370
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variant carriers: 0

GenotypeQuality
all individuals: 10690
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.99199712256092e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.18e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.953152e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

QD
type: SiteQuality
SIO_000300: 1.231e1

GenotypeDepth
all individuals: 19297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.786e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.721e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.95102e6

QD
type: SiteQuality
SIO_000300: 1.045e1

GenotypeDepth
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40387
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.950676e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 8.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 2.082e0

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.293e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeDepth
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7932
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variant carriers: 0

GenotypeDepth
all individuals: 19061
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 2436
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10599
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

QD
type: SiteQuality
SIO_000300: 1.743e1

VQSLOD
type: SiteQuality
SIO_000300: -2.161e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.944667e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

GenotypeDepth
all individuals: 187
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 220
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 2329
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variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 350
bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 2233
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10594
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.505451596431682e-5
allele num: 66586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.943918e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.192e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeDepth
all individuals: 150
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1060
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variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
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GenotypeQuality
all individuals: 72
bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 2415
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 3.031e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.482e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.926924e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 445
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.926924e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 4.68e0

ClippingRankSum
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SIO_000300: -4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
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SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 3.031e0

QD
type: SiteQuality
SIO_000300: 1.482e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 2409
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variant carriers: 4

GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
all individuals: 1065
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variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 10287
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 128
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1835
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variant carriers: 0

GenotypeQuality
all individuals: 38641
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.750437521876094e-5
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.884e0

FS
type: SiteQuality
SIO_000300: 2.391e0

QD
type: SiteQuality
SIO_000300: 1.206e1

DP
type: SiteQuality
SIO_000300: 1.91036e6

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

GenotypeDepth
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7805
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1048
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
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GenotypeQuality
all individuals: 69
bin: 4.75e1
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GenotypeQuality
all individuals: 1060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 10271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 2090
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
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GenotypeQuality
all individuals: 2409
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2199
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.142974696564493e-4
allele num: 9722
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.906742e6

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

QD
type: SiteQuality
SIO_000300: 1.734e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.23e-1

GenotypeDepth
all individuals: 466
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variant carriers: 0

GenotypeDepth
all individuals: 564
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 813
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 1.856536e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.036e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeDepth
all individuals: 13926
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
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variant carriers: 0

GenotypeDepth
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 270
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variant carriers: 0

GenotypeQuality
all individuals: 7000
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9079
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variant carriers: 0

GenotypeQuality
all individuals: 1418
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 391
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GenotypeQuality
all individuals: 797
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 847
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variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.075503613716746e-5
allele num: 65030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178689297501179e-4
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

DP
type: SiteQuality
SIO_000300: 1.798569e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 6.12e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.575e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

GenotypeDepth
all individuals: 6071
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 148
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variant carriers: 0

GenotypeDepth
all individuals: 105
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variant carriers: 0

GenotypeDepth
all individuals: 561
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variant carriers: 0

GenotypeDepth
all individuals: 346
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GenotypeDepth
all individuals: 10872
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variant carriers: 2

GenotypeQuality
all individuals: 179
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
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GenotypeQuality
all individuals: 261
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variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
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variant carriers: 0

GenotypeQuality
all individuals: 5406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3638
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
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variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 7.25e1
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GenotypeQuality
all individuals: 22037
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.166561114629513e-5
allele num: 63160
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.95e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

DP
type: SiteQuality
SIO_000300: 1.637629e6

GenotypeDepth
all individuals: 124
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2466
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variant carriers: 0

GenotypeDepth
all individuals: 260
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variant carriers: 0

GenotypeDepth
all individuals: 102
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GenotypeDepth
all individuals: 218
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GenotypeDepth
all individuals: 186
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GenotypeQuality
all individuals: 2524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
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variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 7.75e1
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GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
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GenotypeQuality
all individuals: 22037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
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variant carriers: 0

GenotypeQuality
all individuals: 428
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GenotypeQuality
all individuals: 3638
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 7.5e0
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GenotypeQuality
all individuals: 385
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GenotypeQuality
all individuals: 12238
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GenotypeQuality
all individuals: 1409
bin: 4.25e1
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GenotypeQuality
all individuals: 2357
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 750
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5406
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.206554121151936e-5
allele num: 16112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.166561114629513e-5
allele num: 63160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 1.637629e6

MQRankSum
type: SiteQuality
SIO_000300: -5.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeDepth
all individuals: 244
bin: 6.25e1
variant carriers: 234

GenotypeDepth
all individuals: 123
bin: 8.25e1
variant carriers: 115

GenotypeDepth
all individuals: 519
bin: 5.25e1
variant carriers: 467

GenotypeDepth
all individuals: 236
bin: 6.75e1
variant carriers: 213

GenotypeQuality
all individuals: 14120
bin: 2.25e1
variant carriers: 112

GenotypeQuality
all individuals: 1670
bin: 2.75e1
variant carriers: 112

GenotypeQuality
all individuals: 1169
bin: 7.5e0
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GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 158

GenotypeQuality
all individuals: 766
bin: 8.25e1
variant carriers: 673

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 548

GenotypeQuality
all individuals: 7060
bin: 6.25e1
variant carriers: 572

GenotypeQuality
all individuals: 387
bin: 3.75e1
variant carriers: 210

GenotypeQuality
all individuals: 401
bin: 4.75e1
variant carriers: 357

GenotypeQuality
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variant carriers: 316

GenotypeQuality
all individuals: 192
bin: 1.25e1
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GenotypeQuality
all individuals: 1934
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variant carriers: 590

GenotypeQuality
all individuals: 508
bin: 5.25e1
variant carriers: 420

GenotypeQuality
all individuals: 1042
bin: 3.25e1
variant carriers: 161

GenotypeQuality
all individuals: 370
bin: 2.5e0
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GenotypeQuality
all individuals: 273
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variant carriers: 83

GenotypeQuality
all individuals: 825
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variant carriers: 636

GenotypeQuality
all individuals: 633
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variant carriers: 376

GenotypeQuality
all individuals: 27294
bin: 9.75e1
variant carriers: 27017

GenotypeQuality
all individuals: 373
bin: 8.75e1
variant carriers: 340

Latino
type: Population
allele count: 4039
allele frequency: 3.902415458937198e-1
allele num: 10350
num of homozygotes: 738

East Asian
type: Population
allele count: 4411
allele frequency: 5.455107593371259e-1
allele num: 8086
num of homozygotes: 1162

European (Non-Finnish)
type: Population
allele count: 19135
allele frequency: 3.146996908098151e-1
allele num: 60804
num of homozygotes: 2797

Other
type: Population
allele count: 317
allele frequency: 3.782816229116945e-1
allele num: 838
num of homozygotes: 65

European (Finnish)
type: Population
allele count: 2016
allele frequency: 3.150984682713348e-1
allele num: 6398
num of homozygotes: 292

South Asian
type: Population
allele count: 8116
allele frequency: 5.126326427488631e-1
allele num: 15832
num of homozygotes: 2058

African
type: Population
allele count: 1408
allele frequency: 1.580956658432517e-1
allele num: 8906
num of homozygotes: 110

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.494903e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.013e0

QD
type: SiteQuality
SIO_000300: 1.808e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

GenotypeDepth
all individuals: 2533
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 24
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
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variant carriers: 0

GenotypeDepth
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
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GenotypeQuality
all individuals: 172
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 31217
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GenotypeQuality
all individuals: 186
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GenotypeQuality
all individuals: 2052
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GenotypeQuality
all individuals: 90
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GenotypeQuality
all individuals: 170
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GenotypeQuality
all individuals: 3498
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GenotypeQuality
all individuals: 2266
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GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 558
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GenotypeQuality
all individuals: 569
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variant carriers: 7

GenotypeQuality
all individuals: 14838
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 430
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GenotypeQuality
all individuals: 426
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GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.867195104992352e-4
allele num: 14382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57416
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.116e0

VQSLOD
type: SiteQuality
SIO_000300: -1.722e0

MQ
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SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.121739e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.444e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeDepth
all individuals: 1395
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4897
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 512
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52814
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.47e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

DP
type: SiteQuality
SIO_000300: 9.59809e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeDepth
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3101
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 875
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variant carriers: 327

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 345
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variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 1.25e1
variant carriers: 1

Latino
type: Population
allele count: 29
allele frequency: 4.447852760736197e-3
allele num: 6520
num of homozygotes: 1

African
type: Population
allele count: 13
allele frequency: 2.220703792278784e-3
allele num: 5854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 248
allele frequency: 6.306581222663005e-3
allele num: 39324
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 9.061254077564335e-5
allele num: 11036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 9.823182711198428e-4
allele num: 5090
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.436426116838488e-3
allele num: 582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 2.298e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

DP
type: SiteQuality
SIO_000300: 7.60634e5

GenotypeDepth
all individuals: 24
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 21
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 2671
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 322
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GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 165
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3228
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.036245163917736e-4
allele num: 9822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.75e-2

MQ
type: SiteQuality
SIO_000300: 5.604e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 6.63264e5

QD
type: SiteQuality
SIO_000300: 7.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.368e0

VQSLOD
type: SiteQuality
SIO_000300: -1.083e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

GenotypeDepth
all individuals: 24
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26399
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GenotypeQuality
all individuals: 1503
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 2114
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GenotypeQuality
all individuals: 1270
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 457
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GenotypeQuality
all individuals: 127
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 2237
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 549
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 1323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.643635397289396e-5
allele num: 15052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2684
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.376e0

MQ
type: SiteQuality
SIO_000300: 5.506e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.799e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.63e-2

DP
type: SiteQuality
SIO_000300: 4.35747e5

QD
type: SiteQuality
SIO_000300: 7.52e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 3064
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 1241
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GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.82429e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.05e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.234e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: -1.773e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeDepth
all individuals: 22
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1363
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 103
bin: 4.75e1
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GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.462528387585163e-5
allele num: 10568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1920
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -6.25e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.60659e5

GenotypeDepth
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 1396
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6846
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GenotypeQuality
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GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 239
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 1187
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.915708812260536e-4
allele num: 5220
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African
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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MQRankSum
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SIO_000300: 8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.098e0

VQSLOD
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SIO_000300: -2.627e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 1.364628820960699e-4
allele num: 7328
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 43650
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Other
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allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12704
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4644
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4684
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12782
num of homozygotes: 0

Latino
type: Population
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allele frequency: 1.314405888538381e-4
allele num: 7608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44024
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.193463478833077e-5
allele num: 45590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.203316e6

MQ
type: SiteQuality
SIO_000300: 5.695e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.218917601170161e-4
allele num: 8204
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48670
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.299309e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49352
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

South Asian
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East Asian
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allele num: 6202
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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QD
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FS
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66028
num of homozygotes: 0

East Asian
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

Latino
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Other
type: Population
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African
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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QD
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MQ
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DP
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InbreedingCoeff
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SIO_000300: 0.0e0

FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.004807692307692e-5
allele num: 66560
num of homozygotes: 0

Latino
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allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9790
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.00336376741951e-5
allele num: 66592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11522
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DP
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.563e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.196e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

DP
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SIO_000300: 1.629273e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 8.500000000000001e-3

MQRankSum
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SIO_000300: 5.11e-1

ReadPosRankSum
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DP
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ClippingRankSum
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FS
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VQSLOD
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: -7.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

South Asian
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Other
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Latino
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European (Finnish)
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African
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East Asian
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Other
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Latino
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South Asian
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 2
allele frequency: 2.322340919647004e-4
allele num: 8612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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FS
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VQSLOD
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MQ
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SIO_000300: 5.94e1

QD
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

DP
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SIO_000300: 1.631684e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.817961459217065e-4
allele num: 16502
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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FS
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SIO_000300: 5.999e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.876e1

DP
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SIO_000300: 1.631713e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.434e0

ReadPosRankSum
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SIO_000300: 1.13e0

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.631629e6

MQ
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SIO_000300: 5.841e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
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SIO_000300: -2.56e-1

BaseQRankSum
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SIO_000300: 8.58e-1

ClippingRankSum
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SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

FS
type: SiteQuality
SIO_000300: 6.07e-1

DP
type: SiteQuality
SIO_000300: 1.631691e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
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South Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

ReadPosRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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FS
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SIO_000300: 1.695e0

InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Other
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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MQ
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FS
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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Other
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African
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Latino
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East Asian
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South Asian
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European (Finnish)
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
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allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
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SIO_000300: 1.72e0

ClippingRankSum
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SIO_000300: -1.008e0

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
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SIO_000300: 1.631516e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.33e-2

DP
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SIO_000300: 1.631004e6

MQRankSum
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BaseQRankSum
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SIO_000300: -1.977e0

QD
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SIO_000300: 7.81e0

ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.667e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.742e0

QD
type: SiteQuality
SIO_000300: 1.276e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

VQSLOD
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DP
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SIO_000300: 1.629927e6

MQRankSum
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SIO_000300: 1.98e-1

ClippingRankSum
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SIO_000300: 7.42e-1

BaseQRankSum
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SIO_000300: 3.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.022645145748013e-5
allele num: 66416
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
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South Asian
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allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

DP
type: SiteQuality
SIO_000300: 1.620986e6

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
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SIO_000300: 2.7e0

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.256e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024800163968026e-4
allele num: 9758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.011322572874006e-5
allele num: 66416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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ClippingRankSum
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SIO_000300: -3.81e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.024822267743102e-5
allele num: 66392
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.219809709685289e-4
allele num: 16396
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Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
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SIO_000300: -2.211e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514967882680887e-5
allele num: 66008
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
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Other
type: Population
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DP
type: SiteQuality
SIO_000300: 1.595526e6

BaseQRankSum
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MQ
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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InbreedingCoeff
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SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.75284837861525e-4
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65790
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 9700
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.438e0

VQSLOD
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FS
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MQ
type: SiteQuality
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DP
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.083e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

QD
type: SiteQuality
SIO_000300: 1.819e1

GenotypeQuality
all individuals: 1396
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52012647452268e-5
allele num: 65784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.127e1

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

DP
type: SiteQuality
SIO_000300: 1.574725e6

MQ
type: SiteQuality
SIO_000300: 5.9e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 362
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39268
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521792062332603e-5
allele num: 65712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.570265e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 7.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.472e0

VQSLOD
type: SiteQuality
SIO_000300: -9.719e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4648
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.458500827618822e-4
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

DP
type: SiteQuality
SIO_000300: 1.559062e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.071e0

QD
type: SiteQuality
SIO_000300: 1.582e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
all individuals: 869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5029
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2566
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3031
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555355087566491e-5
allele num: 64294
num of homozygotes: 0