17-74684177-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684177
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684177
    reference: chr 17
allele count: 5
allele frequency: 4.190904061824217e-5
allele num: 119306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.535+18G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.406+18G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.406+18G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-60+18G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-60+18G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-60+18G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.406+18G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24319
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7348
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-74684178-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684178
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684178
    reference: chr 17
allele count: 19
allele frequency: 1.590676958625655e-4
allele num: 119446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.406+17C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-60+17C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.406+17C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-60+17C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-60+17C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.406+17C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.535+17C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25956
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24430
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD

17-74684189-A-ACTCACCGTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684189
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684198
    reference: chr 17
allele count: 1
allele frequency: 8.324592511196577e-6
allele num: 120126
alternate allele: ACTCACCGTC
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 26506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24983
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
hgvs: c.403_406+5dupGACGGTGAG
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

17-74684190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684190
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684190
    reference: chr 17
allele count: 1
allele frequency: 8.321682977165302e-6
allele num: 120168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-60+5G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.406+5G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-60+5G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.406+5G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-60+5G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.406+5G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.535+5G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
hgvs: c.406+5G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

17-74684195-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684195
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684195
    reference: chr 17
allele count: 4
allele frequency: 3.32491022742386e-5
allele num: 120304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-60G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-60G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.406G>C
  hgvsp: ENSP00000364176.1:p.Gly136Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.535G>C
  hgvsp: ENSP00000465103.1:p.Gly179Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.406G>C
  hgvsp: ENSP00000391466.1:p.Gly136Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.406G>C
  hgvsp: ENSP00000348050.2:p.Gly136Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-60G>C
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly136Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-74684195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684195
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684195
    reference: chr 17
allele count: 9
allele frequency: 7.481048011703684e-5
allele num: 120304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.535G>A
  hgvsp: ENSP00000465103.1:p.Gly179Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.406G>A
  hgvsp: ENSP00000348050.2:p.Gly136Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.406G>A
  hgvsp: ENSP00000391466.1:p.Gly136Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.406G>A
  hgvsp: ENSP00000364176.1:p.Gly136Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-60G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-60G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-60G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26569
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly136Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

17-74684196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684196
    reference: chr 17
allele count: 41
allele frequency: 3.407239969417944e-4
allele num: 120332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.405C>T
  hgvsp: ENST00000449428.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.405C>T
  hgvsp: ENST00000355797.3:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.534C>T
  hgvsp: ENST00000592148.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.405C>T
  hgvsp: ENST00000375036.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25234
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
hgvs: c.405C>T
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-74684196-G-GTCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684199
    reference: chr 17
allele count: 1
allele frequency: 8.310341388824253e-6
allele num: 120332
alternate allele: GTCC
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.402_404dupGGA
  hgvsp: ENSP00000348050.2:p.Glu134dup
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-64_-62dupGGA
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-64_-62dupGGA
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.531_533dupGGA
  hgvsp: ENSP00000465103.1:p.Glu177dup
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.402_404dupGGA
  hgvsp: ENSP00000391466.1:p.Glu134dup
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.402_404dupGGA
  hgvsp: ENSP00000364176.1:p.Glu134dup
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-64_-62dupGGA
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48081
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu134dup
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

17-74684196-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684196
    reference: chr 17
allele count: 1
allele frequency: 8.310341388824253e-6
allele num: 120332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.405C>A
  hgvsp: ENSP00000364176.1:p.Asp135Glu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.405C>A
  hgvsp: ENSP00000348050.2:p.Asp135Glu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.534C>A
  hgvsp: ENSP00000465103.1:p.Asp178Glu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.405C>A
  hgvsp: ENSP00000391466.1:p.Asp135Glu
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp135Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-74684196-GTCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684193
    reference: chr 17
allele count: 2
allele frequency: 1.662068277764851e-5
allele num: 120332
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.402_404delGGA
  hgvsp: ENSP00000348050.2:p.Glu134del
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-64_-62delGGA
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-64_-62delGGA
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.402_404delGGA
  hgvsp: ENSP00000391466.1:p.Glu134del
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-64_-62delGGA
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.531_533delGGA
  hgvsp: ENSP00000465103.1:p.Glu177del
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.402_404delGGA
  hgvsp: ENSP00000364176.1:p.Glu134del
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48081
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu134del
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: GTCC
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-74684198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684198
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684198
    reference: chr 17
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.532G>A
  hgvsp: ENSP00000465103.1:p.Asp178Asn
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.403G>A
  hgvsp: ENSP00000348050.2:p.Asp135Asn
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.403G>A
  hgvsp: ENSP00000391466.1:p.Asp135Asn
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.403G>A
  hgvsp: ENSP00000364176.1:p.Asp135Asn
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48229
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp135Asn
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

17-74684203-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684203
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684203
    reference: chr 17
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-68A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-68A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.398A>G
  hgvsp: ENSP00000348050.2:p.Glu133Gly
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.398A>G
  hgvsp: ENSP00000364176.1:p.Glu133Gly
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-68A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.527A>G
  hgvsp: ENSP00000465103.1:p.Glu176Gly
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.398A>G
  hgvsp: ENSP00000391466.1:p.Glu133Gly
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7559
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu133Gly
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

17-74684205-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684205
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684205
    reference: chr 17
allele count: 1
allele frequency: 8.296138976920141e-6
allele num: 120538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.525G>A
  hgvsp: ENST00000592148.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.396G>A
  hgvsp: ENST00000449428.2:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-70G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.396G>A
  hgvsp: ENST00000375036.2:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.396G>A
  hgvsp: ENST00000355797.3:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-70G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-70G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu132Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

17-74684213-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684213
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684213
    reference: chr 17
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.388G>C
  hgvsp: ENSP00000348050.2:p.Gly130Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.388G>C
  hgvsp: ENSP00000364176.1:p.Gly130Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.517G>C
  hgvsp: ENSP00000465103.1:p.Gly173Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-78G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-78G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.388G>C
  hgvsp: ENSP00000391466.1:p.Gly130Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-78G>C
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly130Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

17-74684217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684217
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684217
    reference: chr 17
allele count: 5
allele frequency: 4.144287514090577e-5
allele num: 120648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.513G>A
  hgvsp: ENST00000592148.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-82G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.384G>A
  hgvsp: ENST00000375036.2:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-82G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.384G>A
  hgvsp: ENST00000449428.2:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-82G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.384G>A
  hgvsp: ENST00000355797.3:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26669
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48628
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7540
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser128Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ

17-74684218-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684218
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684218
    reference: chr 17
allele count: 5
allele frequency: 4.144012730407108e-5
allele num: 120656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-83C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.383C>T
  hgvsp: ENSP00000391466.1:p.Ser128Leu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.383C>T
  hgvsp: ENSP00000364176.1:p.Ser128Leu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-83C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.383C>T
  hgvsp: ENSP00000348050.2:p.Ser128Leu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.512C>T
  hgvsp: ENSP00000465103.1:p.Ser171Leu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-83C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25619
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser128Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

17-74684221-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684221
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684221
    reference: chr 17
allele count: 2
allele frequency: 1.657577616071872e-5
allele num: 120658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-86C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.380C>G
  hgvsp: ENSP00000348050.2:p.Ser127Ter
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.380C>G
  hgvsp: ENSP00000391466.1:p.Ser127Ter
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.380C>G
  hgvsp: ENSP00000364176.1:p.Ser127Ter
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.509C>G
  hgvsp: ENSP00000465103.1:p.Ser170Ter
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-86C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-86C>G
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser127Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

17-74684226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684226
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684226
    reference: chr 17
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-91G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-91G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.375G>A
  hgvsp: ENST00000449428.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.375G>A
  hgvsp: ENST00000375036.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.375G>A
  hgvsp: ENST00000355797.3:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.504G>A
  hgvsp: ENST00000592148.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-91G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly125Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

17-74684236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684236
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684236
    reference: chr 17
allele count: 2
allele frequency: 1.660908849322349e-5
allele num: 120416
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.365G>A
  hgvsp: ENSP00000348050.2:p.Gly122Asp
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.365G>A
  hgvsp: ENSP00000364176.1:p.Gly122Asp
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.494G>A
  hgvsp: ENSP00000465103.1:p.Gly165Asp
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.365G>A
  hgvsp: ENSP00000391466.1:p.Gly122Asp
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-101G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-101G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-101G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly122Asp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-74684241-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684241
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684241
    reference: chr 17
allele count: 5
allele frequency: 4.155032575455391e-5
allele num: 120336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.360G>A
  hgvsp: ENST00000375036.2:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.360G>A
  hgvsp: ENST00000355797.3:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.489G>A
  hgvsp: ENST00000592148.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-106G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.360G>A
  hgvsp: ENST00000449428.2:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-106G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-106G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu120Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-74684243-AGTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684243
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684240
    reference: chr 17
allele count: 6
allele frequency: 4.988775255674732e-5
allele num: 120270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.355_357delGAC
  hgvsp: ENSP00000391466.1:p.Asp119del
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.484_486delGAC
  hgvsp: ENSP00000465103.1:p.Asp162del
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-111_-109delGAC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.355_357delGAC
  hgvsp: ENSP00000364176.1:p.Asp119del
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-111_-109delGAC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.355_357delGAC
  hgvsp: ENSP00000348050.2:p.Asp119del
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-111_-109delGAC
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25731
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp119del
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: AGTC
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

17-74684244-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684244
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684244
    reference: chr 17
allele count: 1
allele frequency: 8.318775476249896e-6
allele num: 120210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.357C>T
  hgvsp: ENST00000449428.2:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.357C>T
  hgvsp: ENST00000375036.2:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-109C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.357C>T
  hgvsp: ENST00000355797.3:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-109C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.486C>T
  hgvsp: ENST00000592148.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-109C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp119Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-74684249-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684249
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684249
    reference: chr 17
allele count: 1
allele frequency: 8.328891257995735e-6
allele num: 120064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.352C>A
  hgvsp: ENSP00000391466.1:p.Gln118Lys
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.481C>A
  hgvsp: ENSP00000465103.1:p.Gln161Lys
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-114C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-114C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.352C>A
  hgvsp: ENSP00000364176.1:p.Gln118Lys
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.352C>A
  hgvsp: ENSP00000348050.2:p.Gln118Lys
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-114C>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln118Lys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-74684260-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684260
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684260
    reference: chr 17
allele count: 11
allele frequency: 9.212267390248396e-5
allele num: 119406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.470A>G
  hgvsp: ENSP00000465103.1:p.Gln157Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-2A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-2A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-2A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-2A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-2A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-2A>G
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25217
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25635
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: c.343-2A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-74684262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684262
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684262
    reference: chr 17
allele count: 1
allele frequency: 8.391514500537057e-6
allele num: 119168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-4G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.468G>A
  hgvsp: ENST00000592148.1:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-4G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-4G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-4G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-4G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-4G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
hgvs: c.343-4G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

17-74684282-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684282
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684282
    reference: chr 17
allele count: 1
allele frequency: 8.70079699300456e-6
allele num: 114932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-24A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-24A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-24A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-24A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.448A>G
  hgvsp: ENSP00000465103.1:p.Thr150Ala
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-24A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-24A>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21427
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr150Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

17-74684286-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684286
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684286
    reference: chr 17
allele count: 1
allele frequency: 8.886045354375489e-6
allele num: 112536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.444G>A
  hgvsp: ENST00000592148.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-28G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-28G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-28G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-28G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-28G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-28G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23456
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys148Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

17-74684292-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684292
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684292
    reference: chr 17
allele count: 1
allele frequency: 9.178353770467728e-6
allele num: 108952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.438T>C
  hgvsp: ENST00000592148.1:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-34T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-34T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-34T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-34T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-34T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-34T>C
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys146Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-74684293-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684293
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684293
    reference: chr 17
allele count: 1
allele frequency: 9.243681943391692e-6
allele num: 108182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-35G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.437G>T
  hgvsp: ENSP00000465103.1:p.Cys146Phe
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-35G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-35G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-35G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-35G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-35G>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21361
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys146Phe
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

17-74684300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684300
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684300
    reference: chr 17
allele count: 1
allele frequency: 9.718928585312756e-6
allele num: 102892
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-42C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-42C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-42C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-42C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-42C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-42C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.430C>T
  hgvsp: ENSP00000465103.1:p.Pro144Ser
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14149
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18622
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro144Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP

17-74684300-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684300
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684300
    reference: chr 17
allele count: 5
allele frequency: 4.859464292656378e-5
allele num: 102892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-42C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-42C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-42C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-42C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-42C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-42C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.430C>G
  hgvsp: ENSP00000465103.1:p.Pro144Ala
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18622
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14149
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro144Ala
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

17-74684306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684306
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684306
    reference: chr 17
allele count: 1
allele frequency: 1.048921708483679e-5
allele num: 95336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-48C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-48C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-48C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-48C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.424C>T
  hgvsp: ENSP00000465103.1:p.His142Tyr
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-48C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-48C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14101
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His142Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

17-74684315-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684315
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684316
    reference: chr 17
allele count: 144
allele frequency: 1.655096317410694e-3
allele num: 87004
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-58dupC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.414dupC
  hgvsp: ENSP00000465103.1:p.Thr139HisfsTer13
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-58dupC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-58dupC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-58dupC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-58dupC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-58dupC
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17215
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 28660
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr139HisfsTer13
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-74684316-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684316
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684316
    reference: chr 17
allele count: 1
allele frequency: 1.171344234643677e-5
allele num: 85372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-58C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-58C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.414C>G
  hgvsp: ENST00000592148.1:c.414C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-58C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-58C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-58C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-58C>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro138Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-74684316-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684316
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684316
    reference: chr 17
allele count: 2
allele frequency: 2.342688469287354e-5
allele num: 85372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-58C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-58C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-58C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-58C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-58C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.414C>A
  hgvsp: ENST00000592148.1:c.414C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-58C>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29254
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro138Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

17-74684319-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684319
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684319
    reference: chr 17
allele count: 6
allele frequency: 7.237810321117518e-5
allele num: 82898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-61C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-61C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-61C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.411C>A
  hgvsp: ENST00000592148.1:c.411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-61C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-61C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-61C>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17414
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32381
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro137Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-74684321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684321
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684321
    reference: chr 17
allele count: 1
allele frequency: 1.230799527372981e-5
allele num: 81248
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-63C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-63C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-63C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-63C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-63C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.409C>T
  hgvsp: ENSP00000465103.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-63C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19513
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro137Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

17-74684322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684322
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684322
    reference: chr 17
allele count: 1
allele frequency: 1.270906410451934e-5
allele num: 78684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-64C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-64C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-64C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-64C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-64C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-64C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.408C>T
  hgvsp: ENST00000592148.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys136Cys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-74684340-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684340
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684337
    reference: chr 17
allele count: 1
allele frequency: 1.687649778917879e-5
allele num: 59254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-85_343-83delCTC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-85_-123-83delCTC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-85_343-83delCTC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-85_-123-83delCTC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.387_389delCTC
  hgvsp: ENSP00000465103.1:p.Ser130del
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-85_-123-83delCTC
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-85_343-83delCTC
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser130del
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: AGAG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-74684341-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684341
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684341
    reference: chr 17
allele count: 1
allele frequency: 1.711039627677777e-5
allele num: 58444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-83C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-83C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-83C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-83C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.389C>A
  hgvsp: ENSP00000465103.1:p.Ser130Tyr
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-83C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-83C>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7625
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser130Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

17-74684344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684344
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684344
    reference: chr 17
allele count: 1
allele frequency: 1.957406827435014e-5
allele num: 51088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-86C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-86C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.386C>T
  hgvsp: ENSP00000465103.1:p.Ser129Phe
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-86C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-86C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-86C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-86C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18509
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24109
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser129Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/17-74684345-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684345
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684345
    reference: chr 17
allele count: 2
allele frequency: 4.241241835609467e-5
allele num: 47156
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-87T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-87T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-87T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.385T>G
  hgvsp: ENSP00000465103.1:p.Ser129Ala
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-87T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-87T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-87T>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11799
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser129Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

17-74684349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684349
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684349
    reference: chr 17
allele count: 1
allele frequency: 2.301919801114129e-5
allele num: 43442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-91G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-91G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-91G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-91G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.381G>A
  hgvsp: ENST00000592148.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-91G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-91G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13096
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg127Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-74684353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684353
    reference: chr 17
allele count: 230
allele frequency: 5.789367700362464e-3
allele num: 39728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-95C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.377C>T
  hgvsp: ENSP00000465103.1:p.Ser126Leu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-95C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-95C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-95C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-95C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-95C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 25663
  bin: 7.5e0
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 1.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14578
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31366
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.25e1
  variant carriers: 5
hgvs: p.Ser126Leu
num of homozygotes: 3
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-74684356-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684356
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684356
    reference: chr 17
allele count: 1
allele frequency: 2.750123755569001e-5
allele num: 36362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-98C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-98C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-98C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.374C>G
  hgvsp: ENSP00000465103.1:p.Pro125Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-98C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-98C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-98C>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13545
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro125Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

17-74684357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684357
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684357
    reference: chr 17
allele count: 6
allele frequency: 1.658741568063696e-4
allele num: 36172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-99C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.373C>T
  hgvsp: ENSP00000465103.1:p.Pro125Ser
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-99C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-99C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-99C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-99C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-99C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13470
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25002
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16968
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro125Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-74684357-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684357
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684357
    reference: chr 17
allele count: 1
allele frequency: 2.76456928010616e-5
allele num: 36172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-99C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-99C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-99C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-99C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.373C>A
  hgvsp: ENSP00000465103.1:p.Pro125Thr
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-99C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-99C>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16968
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29074
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro125Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

17-74684364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684364
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684364
    reference: chr 17
allele count: 8
allele frequency: 2.751977984176127e-4
allele num: 29070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-106G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.366G>A
  hgvsp: ENST00000592148.1:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-106G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-106G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-106G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-106G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-106G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23929
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10720
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21092
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln122Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-74684366-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684366
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684366
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 28406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-108C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-108C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-108C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.364C>A
  hgvsp: ENSP00000465103.1:p.Gln122Lys
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-108C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-108C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-108C>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23829
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21548
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln122Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

17-74684369-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684369
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684369
    reference: chr 17
allele count: 1
allele frequency: 3.810685161191982e-5
allele num: 26242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-111G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-111G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-111G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.361G>A
  hgvsp: ENSP00000465103.1:p.Gly121Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-111G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-111G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-111G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9738
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly121Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

17-74712758-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74712758
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74712759
    reference: chr 17
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000070495
  ensembl protein: ENSP00000394085
  ensembl transcript: ENST00000445478
  gene symbol: JMJD6
  hgvsc: ENST00000445478.2:c.*9dupA
  variant of: http://identifiers.org/hgnc/19355
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48241
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8626
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11572
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9794
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

17-74684370-A-ACGCCCTGTGGCAGCGCCTGCCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684370
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684393
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 25560
alternate allele: ACGCCCTGTGGCAGCGCCTGCCCT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsp: ENSP00000465103.1:p.Gly124LeufsTer76
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22685
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23730
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23010
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly124LeufsTer76
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-74684374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684374
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684374
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-116G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.356G>A
  hgvsp: ENSP00000465103.1:p.Gly119Glu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-116G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-116G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-116G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-116G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-116G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20886
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Gly119Glu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

17-74684385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684385
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684385
    reference: chr 17
allele count: 31
allele frequency: 1.926183670933267e-3
allele num: 16094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-127C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-127C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-127C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-127C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-127C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.345C>T
  hgvsp: ENST00000592148.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-127C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19783
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 28198
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28840
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Gly115Gly
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

17-74684387-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684387
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684387
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 15644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-129G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-129G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-129G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-129G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-129G>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.343G>C
  hgvsp: ENSP00000465103.1:p.Gly115Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-129G>C
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19486
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29261
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly115Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-74684401-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684401
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684401
    reference: chr 17
allele count: 5502
allele frequency: 4.107196177963571e-1
allele num: 13396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-143A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-143A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-143A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-143A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.329A>G
  hgvsp: ENSP00000465103.1:p.His110Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-143A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-143A>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 733
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 24672
  bin: 2.5e0
  variant carriers: 3256
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.25e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 18240
  bin: 7.5e0
  variant carriers: 9564
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 1.25e1
  variant carriers: 2755
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 8295
  bin: 2.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.75e1
  variant carriers: 417
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.25e1
  variant carriers: 207
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 145
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 2.75e1
  variant carriers: 1056
genotype quality: GenotypeQuality
  all individuals: 18626
  bin: 7.5e0
  variant carriers: 1333
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.25e1
  variant carriers: 533
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 6.75e1
  variant carriers: 191
genotype quality: GenotypeQuality
  all individuals: 6205
  bin: 2.25e1
  variant carriers: 1683
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 1.25e1
  variant carriers: 1195
hgvs: p.His110Arg
num of homozygotes: 943
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-74684403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684403
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684403
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 9230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-145C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-145C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-145C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-145C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.327C>T
  hgvsp: ENST00000592148.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-145C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-145C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35907
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35443
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp109Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

17-74684411-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684411
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684411
    reference: chr 17
allele count: 2
allele frequency: 2.628811777076761e-4
allele num: 7608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.319C>G
  hgvsp: ENSP00000465103.1:p.Leu107Val
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-153C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-153C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-153C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-153C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-153C>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-153C>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6256
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34676
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu107Val
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-74684420-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684420
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684420
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 6872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-162C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-162C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-162C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-162C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.310C>A
  hgvsp: ENSP00000465103.1:p.Pro104Thr
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-162C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-162C>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34991
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33766
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro104Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-74684433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684433
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684433
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 5880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.297G>A
  hgvsp: ENST00000592148.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-175G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-175G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-175G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-175G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-175G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-175G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser99Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-74684436-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684436
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684436
    reference: chr 17
allele count: 4
allele frequency: 7.142857142857143e-4
allele num: 5600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-178A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.294A>G
  hgvsp: ENST00000592148.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-178A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-178A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-178A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-178A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-178A>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28173
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26712
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro98Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

17-74684439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684439
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684439
    reference: chr 17
allele count: 13
allele frequency: 2.355926060166727e-3
allele num: 5518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-181C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-181C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.291C>T
  hgvsp: ENST00000592148.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-181C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-181C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-181C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-181C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 27897
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26574
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 2
hgvs: p.Gly97Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

17-74684452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684452
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684452
    reference: chr 17
allele count: 2035
allele frequency: 3.883587786259542e-1
allele num: 5240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-194C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-194C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.278C>T
  hgvsp: ENSP00000465103.1:p.Pro93Leu
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-194C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-194C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-194C>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-194C>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.25e1
  variant carriers: 674
genotype depth: GenotypeDepth
  all individuals: 17300
  bin: 2.5e0
  variant carriers: 2431
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 7.5e0
  variant carriers: 2295
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 3.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.25e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 12695
  bin: 7.5e0
  variant carriers: 1267
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 1.25e1
  variant carriers: 685
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 9.75e1
  variant carriers: 1609
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 233
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 412
genotype quality: GenotypeQuality
  all individuals: 4504
  bin: 2.5e0
  variant carriers: 14
hgvs: p.Pro93Leu
num of homozygotes: 350
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

17-74684504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684504
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684504
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 2858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-246G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-246G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-246G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-246G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.226G>A
  hgvsp: ENSP00000465103.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-123-246G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-123-246G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu76Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-74684544-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684544
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684544
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 2810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-124+208A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-286A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-286A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-286A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-124+208A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-286A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.186A>G
  hgvsp: ENST00000592148.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6807
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr62Thr
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

17-74684586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684586
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684586
    reference: chr 17
allele count: 1
allele frequency: 3.188775510204081e-4
allele num: 3136
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-328G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-328G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-328G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-124+166G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.144G>A
  hgvsp: ENST00000592148.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-124+166G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-328G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala48Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-74684598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684598
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684598
    reference: chr 17
allele count: 2697
allele frequency: 7.75e-1
allele num: 3480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-124+154G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-340G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-340G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-340G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.132G>A
  hgvsp: ENST00000592148.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-340G>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-124+154G>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 2.5e0
  variant carriers: 1372
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.5e0
  variant carriers: 516
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.75e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.25e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 7.5e0
  variant carriers: 906
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.25e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.25e1
  variant carriers: 419
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 6.75e1
  variant carriers: 65
hgvs: p.Leu44Leu
num of homozygotes: 1053
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-74684620-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684620
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684620
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 3390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.110T>G
  hgvsp: ENSP00000465103.1:p.Leu37Arg
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-124+132T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-362T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-124+132T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-362T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-362T>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-362T>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5327
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu37Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-74684661-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684661
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684661
    reference: chr 17
allele count: 1
allele frequency: 3.295978905735003e-4
allele num: 3034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.69A>G
  hgvsp: ENST00000592148.1:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-124+91A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-403A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-403A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-124+91A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-403A>G
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-403A>G
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4032
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro23Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/17-74684673-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684673
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684673
    reference: chr 17
allele count: 2
allele frequency: 7.251631617113851e-4
allele num: 2758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.57G>T
  hgvsp: ENSP00000465103.1:p.Arg19Ser
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-415G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-415G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-415G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-124+79G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-415G>T
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-124+79G>T
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg19Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

17-74684721-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684721
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684721
    reference: chr 17
allele count: 1
allele frequency: 4.642525533890436e-4
allele num: 2154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-463T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.9T>C
  hgvsp: ENST00000592148.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-463T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-463T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-124+31T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-463T>C
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-124+31T>C
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr3Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

17-74684778-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74684778
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 74684778
    reference: chr 17
allele count: 2
allele frequency: 9.823182711198428e-4
allele num: 2036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000465103
  ensembl transcript: ENST00000592148
  gene symbol: MXRA7
  hgvsc: ENST00000592148.1:c.-49C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000468020
  ensembl transcript: ENST00000588114
  gene symbol: MXRA7
  hgvsc: ENST00000588114.1:c.-123-520C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000364176
  ensembl transcript: ENST00000375036
  gene symbol: MXRA7
  hgvsc: ENST00000375036.2:c.343-520C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000391466
  ensembl transcript: ENST00000449428
  gene symbol: MXRA7
  hgvsc: ENST00000449428.2:c.343-520C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000466376
  ensembl transcript: ENST00000585519
  gene symbol: MXRA7
  hgvsc: ENST00000585519.1:c.-150C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000467510
  ensembl transcript: ENST00000589082
  gene symbol: MXRA7
  hgvsc: ENST00000589082.1:c.-150C>A
  variant of: http://identifiers.org/hgnc/7541
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182534
  ensembl protein: ENSP00000348050
  ensembl transcript: ENST00000355797
  gene symbol: MXRA7
  hgvsc: ENST00000355797.3:c.343-520C>A
  variant of: http://identifiers.org/hgnc/7541
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 300
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.868460388639761e-4
allele num: 16056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.764241893076249e-5
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65864
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.202e0

FS
type: SiteQuality
SIO_000300: 8.895e0

DP
type: SiteQuality
SIO_000300: 1.51428e6

MQ
type: SiteQuality
SIO_000300: 5.909e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.416e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.195e0

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.111e1

GenotypeQuality
all individuals: 7377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 1359
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.517766497461929e-4
allele num: 6304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.067961165048543e-5
allele num: 65920
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.012622720897616e-4
allele num: 11408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

DP
type: SiteQuality
SIO_000300: 1.518053e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 1.387e0

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.36e1

FS
type: SiteQuality
SIO_000300: 1.0565e1

QD
type: SiteQuality
SIO_000300: 3.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.371e0

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

DP
type: SiteQuality
SIO_000300: 1.531469e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.131207847946045e-5
allele num: 16310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.53215e6

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 7.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 1.293e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.037189084762135e-5
allele num: 66256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.195e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 1.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

DP
type: SiteQuality
SIO_000300: 1.536418e6

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47947
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.546486355952668e-5
allele num: 66256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.558117793705204e-4
allele num: 6418
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.173e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.195e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 1.536418e6

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

GenotypeQuality
all individuals: 1385
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 48081
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.05548765582987e-4
allele num: 16364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.130681475221826e-4
allele num: 66268
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.947040498442368e-4
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

DP
type: SiteQuality
SIO_000300: 1.538315e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.218e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 553
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GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

DP
type: SiteQuality
SIO_000300: 1.538315e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

QD
type: SiteQuality
SIO_000300: 1.218e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48081
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509023963300537e-5
allele num: 66268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.538315e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018047926601074e-5
allele num: 66268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.538315e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7547
bin: 6.75e1
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GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.124e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.047e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.537999e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.99e-1

QD
type: SiteQuality
SIO_000300: 9.35e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 131
bin: 2.75e1
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GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 366
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 569
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GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507613447911955e-5
allele num: 66330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.917e0

DP
type: SiteQuality
SIO_000300: 1.539837e6

QD
type: SiteQuality
SIO_000300: 1.21e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.018e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.540765e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.355e0

FS
type: SiteQuality
SIO_000300: 4.422e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.529e0

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

GenotypeQuality
all individuals: 1400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.542998e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.053e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 366
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218620521569583e-4
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011685339115769e-5
allele num: 66408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.695559433779329e-5
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.162e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

DP
type: SiteQuality
SIO_000300: 1.544327e6

FS
type: SiteQuality
SIO_000300: 3.223e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.79e-1

MQ
type: SiteQuality
SIO_000300: 5.848e1

GenotypeQuality
all individuals: 1038
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 48712
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.437538086532602e-4
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.807e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 1.544194e6

VQSLOD
type: SiteQuality
SIO_000300: -9.876e-1

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48708
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7549
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variant carriers: 0

GenotypeQuality
all individuals: 509
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variant carriers: 2

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.739130434782609e-4
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.544053e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

QD
type: SiteQuality
SIO_000300: 9.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 7.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeQuality
all individuals: 1041
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 121
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1389
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48523
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variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.104260774020266e-5
allele num: 16382
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.229e0

QD
type: SiteQuality
SIO_000300: 1.517e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.543579e6

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.59e-1

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1377
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.948178453146308e-4
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.541188e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.452e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-2

QD
type: SiteQuality
SIO_000300: 6.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.84e1

GenotypeQuality
all individuals: 1370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.791058605513088e-4
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.864e0

VQSLOD
type: SiteQuality
SIO_000300: 8.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.941e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 1.540517e6

QD
type: SiteQuality
SIO_000300: 1.125e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.83e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.950880444856349e-4
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.362e0

MQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.539496e6

QD
type: SiteQuality
SIO_000300: 1.511e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

MQ
type: SiteQuality
SIO_000300: 5.748e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

FS
type: SiteQuality
SIO_000300: 1.876e0

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 50
bin: 4.25e1
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GenotypeQuality
all individuals: 15
bin: 7.5e0
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GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.775171065493646e-5
allele num: 10230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.649e0

BaseQRankSum
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SIO_000300: -8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.538486e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511213201958532e-5
allele num: 66172
num of homozygotes: 0

QD
type: SiteQuality
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DP
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SIO_000300: 1.536537e6

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.517773123273533e-4
allele num: 65886
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.912767644726408e-5
allele num: 10088
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

BaseQRankSum
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SIO_000300: -1.359e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.251e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.215813028344107e-5
allele num: 16088
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.229e0

VQSLOD
type: SiteQuality
SIO_000300: -1.271e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

DP
type: SiteQuality
SIO_000300: 1.524909e6

FS
type: SiteQuality
SIO_000300: 3.215e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 1.665e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568135486906069e-5
allele num: 63770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10848
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 1.458705e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.842e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.311e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.207437816952427e-4
allele num: 8282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62580
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.075e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 2.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.529e0

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

DP
type: SiteQuality
SIO_000300: 1.422114e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 10112
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South Asian
type: Population
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allele frequency: 7.016559079427449e-5
allele num: 14252
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Other
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60596
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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DP
type: SiteQuality
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ClippingRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
type: Population
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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DP
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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QD
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Finnish)
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Latino
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allele frequency: 4.264392324093816e-4
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European (Non-Finnish)
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allele frequency: 1.7481906227055e-5
allele num: 57202
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Other
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VQSLOD
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QD
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FS
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.020532563362207e-5
allele num: 12468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.284e0

QD
type: SiteQuality
SIO_000300: 3.73e0

FS
type: SiteQuality
SIO_000300: 1.309e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.12399e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.978e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 391
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 496
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 17000
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2569
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 1.764913519237557e-4
allele num: 11332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.134927412467976e-4
allele num: 4684
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.453104359313078e-3
allele num: 7570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 5.822174166181485e-4
allele num: 48092
num of homozygotes: 0

African
type: Population
allele count: 101
allele frequency: 1.263131565782892e-2
allele num: 7996
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6694
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.572327044025157e-3
allele num: 636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.012935e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 5.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeQuality
all individuals: 511
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16267
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47316
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.294665976178146e-4
allele num: 7724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.481e0

VQSLOD
type: SiteQuality
SIO_000300: -2.348e0

QD
type: SiteQuality
SIO_000300: 6.54e0

MQRankSum
type: SiteQuality
SIO_000300: -1.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.739e0

DP
type: SiteQuality
SIO_000300: 9.99985e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 2480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
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variant carriers: 0

GenotypeQuality
all individuals: 499
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.294665976178146e-4
allele num: 7724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.1134499957731e-5
allele num: 47316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.348e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.739e0

FS
type: SiteQuality
SIO_000300: 1.481e0

MQRankSum
type: SiteQuality
SIO_000300: -1.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

DP
type: SiteQuality
SIO_000300: 9.99985e5

QD
type: SiteQuality
SIO_000300: 6.54e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

GenotypeQuality
all individuals: 2094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 385
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variant carriers: 0

GenotypeQuality
all individuals: 14094
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variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2326
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.772020725388601e-4
allele num: 7720
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.35554e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.016e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
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variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 1

GenotypeQuality
all individuals: 1991
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.619170984455959e-4
allele num: 6176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45052
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

FS
type: SiteQuality
SIO_000300: 4.443e0

DP
type: SiteQuality
SIO_000300: 9.15767e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.239e1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 2832
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.5e0
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GenotypeQuality
all individuals: 2289
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
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variant carriers: 0

GenotypeQuality
all individuals: 34233
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
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GenotypeQuality
all individuals: 1787
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variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 1

GenotypeQuality
all individuals: 520
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variant carriers: 0

GenotypeQuality
all individuals: 11884
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.830908375933936e-5
allele num: 10172
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

DP
type: SiteQuality
SIO_000300: 8.89264e5

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.476e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

GenotypeQuality
all individuals: 2781
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
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variant carriers: 0

GenotypeQuality
all individuals: 37352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 442
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variant carriers: 1

GenotypeQuality
all individuals: 825
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GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.052316708381662e-5
allele num: 32762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

DP
type: SiteQuality
SIO_000300: 6.90465e5

MQ
type: SiteQuality
SIO_000300: 5.585e1

FS
type: SiteQuality
SIO_000300: 5.064e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

QD
type: SiteQuality
SIO_000300: 1.907e1

GenotypeQuality
all individuals: 939
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37338
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
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variant carriers: 0

GenotypeQuality
all individuals: 929
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variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.342642320085929e-4
allele num: 7448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.598e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.464e0

DP
type: SiteQuality
SIO_000300: 6.82519e5

QD
type: SiteQuality
SIO_000300: 4.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2060
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.75e1
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GenotypeQuality
all individuals: 3358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 163
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variant carriers: 0

GenotypeQuality
all individuals: 34264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.547860640034059e-5
allele num: 28186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

DP
type: SiteQuality
SIO_000300: 6.29642e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -4.056e-1

GenotypeQuality
all individuals: 2863
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
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GenotypeQuality
all individuals: 443
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26016
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.779321845469705e-4
allele num: 3598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.105590062111801e-4
allele num: 3220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

QD
type: SiteQuality
SIO_000300: 1.143e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.005e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.52e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

DP
type: SiteQuality
SIO_000300: 6.09258e5

GenotypeQuality
all individuals: 442
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 2912
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 702
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.161118508655127e-5
allele num: 24032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5002
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

FS
type: SiteQuality
SIO_000300: 3.106e0

DP
type: SiteQuality
SIO_000300: 5.85635e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -5.379e-1

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2406
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2157
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 588
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 187
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 639
bin: 9.75e1
variant carriers: 232

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2614
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.813401033638589e-4
allele num: 22058
num of homozygotes: 0

African
type: Population
allele count: 217
allele frequency: 4.564577198148927e-2
allele num: 4754
num of homozygotes: 3

Latino
type: Population
allele count: 9
allele frequency: 3.685503685503686e-3
allele num: 2442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.72e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 5.60548e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.479e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

GenotypeQuality
all individuals: 148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
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variant carriers: 0

GenotypeQuality
all individuals: 16863
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GenotypeQuality
all individuals: 3208
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variant carriers: 0

GenotypeQuality
all individuals: 1524
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variant carriers: 0

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2209
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.282062984938384e-4
allele num: 4382
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.30864e5

VQSLOD
type: SiteQuality
SIO_000300: -3.656e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeQuality
all individuals: 180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 29074
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 1883
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variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 9.569377990430622e-4
allele num: 2090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.981375074301565e-4
allele num: 20188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 3.039e0

QD
type: SiteQuality
SIO_000300: 1.149e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.78e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 5.29839e5

GenotypeQuality
all individuals: 2019
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2815
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 2255
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.717472118959108e-4
allele num: 2690
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 5.29839e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.78e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

FS
type: SiteQuality
SIO_000300: 3.039e0

GenotypeQuality
all individuals: 124
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 5.75e1
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 443
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GenotypeQuality
all individuals: 424
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GenotypeQuality
all individuals: 147
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 406
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GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.411255411255411e-4
allele num: 1848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 4.288164665523156e-4
allele num: 16324
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.08e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.11e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

DP
type: SiteQuality
SIO_000300: 4.7614e5

GenotypeQuality
all individuals: 409
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
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GenotypeQuality
all individuals: 92
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GenotypeQuality
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GenotypeQuality
all individuals: 1596
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GenotypeQuality
all individuals: 1128
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 2441
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GenotypeQuality
all individuals: 393
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 4.69767e5

VQSLOD
type: SiteQuality
SIO_000300: -2.654e0

QD
type: SiteQuality
SIO_000300: 2.582e1

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
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GenotypeQuality
all individuals: 67
bin: 9.25e1
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GenotypeQuality
all individuals: 372
bin: 6.75e1
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 23777
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 94
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.604902667627974e-4
allele num: 2774
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.471e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 4.509e5

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.427e0

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.58e-2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 4.739e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

MQ
type: SiteQuality
SIO_000300: 6.01e1

DP
type: SiteQuality
SIO_000300: 3.417077e6

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.336e1

GenotypeQuality
all individuals: 1437
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 4.43774e5

MQ
type: SiteQuality
SIO_000300: 4.824e1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 1259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.04735e5

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.818e0

VQSLOD
type: SiteQuality
SIO_000300: -2.222e0

FS
type: SiteQuality
SIO_000300: 5.855e0

QD
type: SiteQuality
SIO_000300: 2.192e1

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 5

GenotypeQuality
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bin: 8.25e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 942
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1334
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 1.140684410646388e-2
allele num: 2630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.718213058419244e-3
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.57743e5

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 2.183e0

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2975
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2588
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.568e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 3.50641e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 2.793e1

GenotypeQuality
all individuals: 533
bin: 3.25e1
variant carriers: 410

GenotypeQuality
all individuals: 2576
bin: 1.75e1
variant carriers: 1896

GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 723

GenotypeQuality
all individuals: 627
bin: 9.25e1
variant carriers: 605

GenotypeQuality
all individuals: 251
bin: 3.75e1
variant carriers: 218

GenotypeQuality
all individuals: 1119
bin: 6.25e1
variant carriers: 663

GenotypeQuality
all individuals: 834
bin: 8.75e1
variant carriers: 820

GenotypeQuality
all individuals: 4256
bin: 9.75e1
variant carriers: 4154

GenotypeQuality
all individuals: 332
bin: 4.75e1
variant carriers: 317

GenotypeQuality
all individuals: 843
bin: 5.75e1
variant carriers: 837

European (Finnish)
type: Population
allele count: 612
allele frequency: 4.567164179104478e-1
allele num: 1340
num of homozygotes: 122

Latino
type: Population
allele count: 198
allele frequency: 4.177215189873418e-1
allele num: 474
num of homozygotes: 32

Other
type: Population
allele count: 63
allele frequency: 4.565217391304348e-1
allele num: 138
num of homozygotes: 10

South Asian
type: Population
allele count: 388
allele frequency: 3.935091277890467e-1
allele num: 986
num of homozygotes: 62

East Asian
type: Population
allele count: 178
allele frequency: 2.557471264367816e-1
allele num: 696
num of homozygotes: 18

African
type: Population
allele count: 630
allele frequency: 2.924791086350975e-1
allele num: 2154
num of homozygotes: 84

European (Non-Finnish)
type: Population
allele count: 3433
allele frequency: 4.512355415352261e-1
allele num: 7608
num of homozygotes: 615

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.159e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

DP
type: SiteQuality
SIO_000300: 3.25654e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

QD
type: SiteQuality
SIO_000300: 1.899e1

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 2.5e0
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GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 1519
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.63407e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.03e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.997e-1

QD
type: SiteQuality
SIO_000300: 3.217e1

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
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variant carriers: 2

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 684
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.408450704225352e-3
allele num: 1420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.679999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.627e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.067e0

DP
type: SiteQuality
SIO_000300: 2.29995e5

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 6.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 637
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GenotypeQuality
all individuals: 44
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.98e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.885e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.087e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 2.11527e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 692
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.210000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.7689e5

QD
type: SiteQuality
SIO_000300: 1.519e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.877e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1945
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GenotypeQuality
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GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 38
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variant carriers: 3

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 377
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 59
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.824091778202677e-3
allele num: 1046
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.65927e5

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 1.142e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

GenotypeQuality
all individuals: 294
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 386
bin: 9.75e1
variant carriers: 14

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 9.505703422053232e-4
allele num: 1052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 4.487658937920718e-3
allele num: 2674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.98e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 3.405e0

QD
type: SiteQuality
SIO_000300: 1.396e1

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

DP
type: SiteQuality
SIO_000300: 1.6399e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 697
bin: 1.75e1
variant carriers: 578

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 118

GenotypeQuality
all individuals: 205
bin: 6.75e1
variant carriers: 139

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 62

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 137

GenotypeQuality
all individuals: 90
bin: 7.25e1
variant carriers: 55

GenotypeQuality
all individuals: 403
bin: 6.25e1
variant carriers: 199

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 93

GenotypeQuality
all individuals: 1462
bin: 2.25e1
variant carriers: 359

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 51

South Asian
type: Population
allele count: 86
allele frequency: 3.524590163934426e-1
allele num: 244
num of homozygotes: 13

East Asian
type: Population
allele count: 42
allele frequency: 2.164948453608248e-1
allele num: 194
num of homozygotes: 7

Other
type: Population
allele count: 36
allele frequency: 4.186046511627907e-1
allele num: 86
num of homozygotes: 4

Latino
type: Population
allele count: 70
allele frequency: 3.571428571428572e-1
allele num: 196
num of homozygotes: 10

African
type: Population
allele count: 242
allele frequency: 2.725225225225225e-1
allele num: 888
num of homozygotes: 33

European (Non-Finnish)
type: Population
allele count: 1002
allele frequency: 4.120065789473684e-1
allele num: 2432
num of homozygotes: 169

European (Finnish)
type: Population
allele count: 557
allele frequency: 4.641666666666667e-1
allele num: 1200
num of homozygotes: 114

QD
type: SiteQuality
SIO_000300: 2.057e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.91e0

MQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.866e-1

DP
type: SiteQuality
SIO_000300: 1.46458e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.067e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.892e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.5743e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.210000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.179e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 788
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.9049e4

MQ
type: SiteQuality
SIO_000300: 5.344e1

QD
type: SiteQuality
SIO_000300: 1.024e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.85e-2

GenotypeQuality
all individuals: 623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5466
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.771929824561403e-3
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.0898e4

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.41e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.06e-2

FS
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 35

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 51

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 32

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 12

GenotypeQuality
all individuals: 301
bin: 1.75e1
variant carriers: 300

GenotypeQuality
all individuals: 1159
bin: 9.75e1
variant carriers: 1159

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 36

GenotypeQuality
all individuals: 58
bin: 8.25e1
variant carriers: 57

GenotypeQuality
all individuals: 67
bin: 7.75e1
variant carriers: 66

GenotypeQuality
all individuals: 58
bin: 7.25e1
variant carriers: 52

Other
type: Population
allele count: 53
allele frequency: 7.571428571428571e-1
allele num: 70
num of homozygotes: 20

East Asian
type: Population
allele count: 33
allele frequency: 5.0e-1
allele num: 66
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 944
allele frequency: 8.040885860306644e-1
allele num: 1174
num of homozygotes: 379

South Asian
type: Population
allele count: 84
allele frequency: 7.5e-1
allele num: 112
num of homozygotes: 32

Latino
type: Population
allele count: 60
allele frequency: 6.521739130434783e-1
allele num: 92
num of homozygotes: 19

African
type: Population
allele count: 220
allele frequency: 5.789473684210527e-1
allele num: 380
num of homozygotes: 65

European (Finnish)
type: Population
allele count: 1303
allele frequency: 8.215636822194199e-1
allele num: 1586
num of homozygotes: 530

VQSLOD
type: SiteQuality
SIO_000300: 2.023e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.342e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

QD
type: SiteQuality
SIO_000300: 2.701e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.771e-1

DP
type: SiteQuality
SIO_000300: 7.8722e4

FS
type: SiteQuality
SIO_000300: 5.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1130
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

DP
type: SiteQuality
SIO_000300: 6.5415e4

QD
type: SiteQuality
SIO_000300: 1.67e1

GenotypeQuality
all individuals: 461
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.289308176100629e-4
allele num: 1590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.393e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.443e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.79e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 5.935e0

DP
type: SiteQuality
SIO_000300: 5.7273e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.020408163265306e-2
allele num: 196
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.44e-2

FS
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.3947e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 1.462e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.281407035175879e-4
allele num: 1592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

FS
type: SiteQuality
SIO_000300: 1.111e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 4.7542e4

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 353
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 55
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 3