11-72538284-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538284
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538284
    reference: chr 11
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3672A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000438474
  ensembl transcript: ENST00000535830
  gene symbol: ATG16L2
  hgvsc: ENST00000535830.1:c.930A>G
  hgvsp: ENSP00000438474.1:p.Asp311Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1120A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1172A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.911A>G
  hgvsp: ENSP00000437412.1:p.Asp304Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1120A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.750A>G
  hgvsp: ENSP00000441747.1:p.Asp251Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2706A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1418A>G
  hgvsp: ENSP00000326340.5:p.Asp473Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3154A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.911A>G
  hgvsp: ENSP00000441989.1:p.Asp304Gly
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp473Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

11-72538289-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538289
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538289
    reference: chr 11
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1423A>G
  hgvsp: ENSP00000326340.5:p.Ile475Val
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.755A>G
  hgvsp: ENSP00000441747.1:p.Ile253Val
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.916A>G
  hgvsp: ENSP00000441989.1:p.Ile306Val
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3677A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1115A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1115A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1177A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2711A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.916A>G
  hgvsp: ENSP00000437412.1:p.Ile306Val
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000438474
  ensembl transcript: ENST00000535830
  gene symbol: ATG16L2
  hgvsc: ENST00000535830.1:c.935A>G
  hgvsp: ENSP00000438474.1:p.Ile313Val
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3159A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile475Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

11-72538300-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538300
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538300
    reference: chr 11
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.927T>C
  hgvsp: ENST00000541367.1:c.927T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000438474
  ensembl transcript: ENST00000535830
  gene symbol: ATG16L2
  hgvsc: ENST00000535830.1:c.946T>C
  hgvsp: ENST00000535830.1:c.946T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1434T>C
  hgvsp: ENST00000321297.5:c.1434T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1104T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1104T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.766T>C
  hgvsp: ENST00000540222.1:c.766T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2722T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1188T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.927T>C
  hgvsp: ENST00000538973.1:c.927T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3688T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3170T>C
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser478Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

11-72538302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538302
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538302
    reference: chr 11
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1102G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1102G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1436G>A
  hgvsp: ENSP00000326340.5:p.Gly479Asp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.929G>A
  hgvsp: ENSP00000437412.1:p.Gly310Asp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1190G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3172G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.768G>A
  hgvsp: ENSP00000441747.1:p.Gly257Asp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2724G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.929G>A
  hgvsp: ENSP00000441989.1:p.Gly310Asp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3690G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000438474
  ensembl transcript: ENST00000535830
  gene symbol: ATG16L2
  hgvsc: ENST00000535830.1:c.948G>A
  hgvsp: ENSP00000438474.1:p.Gly317Asp
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly479Asp
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

11-72538311-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538311
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538311
    reference: chr 11
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1093A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000438474
  ensembl transcript: ENST00000535830
  gene symbol: ATG16L2
  hgvsc: ENST00000535830.1:c.957A>G
  hgvsp: ENSP00000438474.1:p.Asp320Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.777A>G
  hgvsp: ENSP00000441747.1:p.Asp260Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.938A>G
  hgvsp: ENSP00000437412.1:p.Asp313Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3699A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.938A>G
  hgvsp: ENSP00000441989.1:p.Asp313Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2733A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1445A>G
  hgvsp: ENSP00000326340.5:p.Asp482Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1199A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3181A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1093A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp482Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-72538321-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538321
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538321
    reference: chr 11
allele count: 3
allele frequency: 2.472839974282464e-5
allele num: 121318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2743C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.787C>G
  hgvsp: ENSP00000441747.1:p.Ile263Met
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.948C>G
  hgvsp: ENSP00000441989.1:p.Ile316Met
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1083C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1455C>G
  hgvsp: ENSP00000326340.5:p.Ile485Met
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3709C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1209C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.948C>G
  hgvsp: ENSP00000437412.1:p.Ile316Met
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1083C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3191C>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile485Met
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

11-72538322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538322
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538322
    reference: chr 11
allele count: 7
allele frequency: 5.769959939992417e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3710C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2744C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3192C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1210C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1456C>T
  hgvsp: ENSP00000326340.5:p.Arg486Trp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.788C>T
  hgvsp: ENSP00000441747.1:p.Arg264Trp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.949C>T
  hgvsp: ENSP00000437412.1:p.Arg317Trp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1082C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.949C>T
  hgvsp: ENSP00000441989.1:p.Arg317Trp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1082C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg486Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

11-72538323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538323
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538323
    reference: chr 11
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.950G>A
  hgvsp: ENSP00000437412.1:p.Arg317Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2745G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1211G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3711G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.789G>A
  hgvsp: ENSP00000441747.1:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.950G>A
  hgvsp: ENSP00000441989.1:p.Arg317Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1081G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1457G>A
  hgvsp: ENSP00000326340.5:p.Arg486Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1081G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3193G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg486Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-72538328-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538328
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538328
    reference: chr 11
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3198T>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.794T>G
  hgvsp: ENSP00000441747.1:p.Trp266Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3716T>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.955T>G
  hgvsp: ENSP00000437412.1:p.Trp319Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1076T>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1462T>G
  hgvsp: ENSP00000326340.5:p.Trp488Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.955T>G
  hgvsp: ENSP00000441989.1:p.Trp319Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2750T>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1076T>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1216T>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp488Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-72538336-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538336
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538336
    reference: chr 11
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1470C>G
  hgvsp: ENSP00000326340.5:p.Ser490Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3724C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1224C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.963C>G
  hgvsp: ENSP00000437412.1:p.Ser321Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.963C>G
  hgvsp: ENSP00000441989.1:p.Ser321Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1068C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.802C>G
  hgvsp: ENSP00000441747.1:p.Ser268Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2758C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3206C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1068C>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser490Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-72538339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538339
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538339
    reference: chr 11
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+1G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+1G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+1G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1065G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+1G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+1G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+1G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+1G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+1G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1065G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1472+1G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

11-72538347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538347
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538347
    reference: chr 11
allele count: 13
allele frequency: 1.073634832017442e-4
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+9C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+9C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+9C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1057C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+9C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+9C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+9C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+9C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1057C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+9C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17853
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/11-72538349-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538349
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538349
    reference: chr 11
allele count: 1
allele frequency: 8.259138737012504e-6
allele num: 121078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+11C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+11C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+11C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+11C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+11C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+11C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1055C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+11C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+11C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1055C>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-72538350-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538350
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538350
    reference: chr 11
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1054A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1054A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+12A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-72538353-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538353
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538353
    reference: chr 11
allele count: 3
allele frequency: 2.479174930583102e-5
allele num: 121008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+15C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1051C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+15C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1051C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+15C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+15C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+15C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+15C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+15C>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+15C>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-72538353-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538353
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538353
    reference: chr 11
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+15C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+15C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1051C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+15C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+15C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+15C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1051C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+15C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+15C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+15C>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

11-72538359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538359
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538359
    reference: chr 11
allele count: 3
allele frequency: 2.482128673550437e-5
allele num: 120864
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+21G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+21G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+21G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+21G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+21G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+21G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1045G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1045G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+21G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+21G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36000
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-72538360-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538360
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538360
    reference: chr 11
allele count: 2
allele frequency: 1.655053706492776e-5
allele num: 120842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+22A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1044A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+22A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+22A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1044A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+22A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+22A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+22A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+22A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+22A>C
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-72538371-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538371
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538371
    reference: chr 11
allele count: 1
allele frequency: 8.301648707433296e-6
allele num: 120458
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+33A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+33A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+33A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+33A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+33A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1033A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1033A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+33A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+33A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+33A>C
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30732
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

11-72538373-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538373
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538373
    reference: chr 11
allele count: 2
allele frequency: 1.660715768496222e-5
allele num: 120430
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+35G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+35G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1031G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+35G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+35G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+35G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1031G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+35G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+35G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+35G>C
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16726
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30179
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-72538383-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538383
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538383
    reference: chr 11
allele count: 1
allele frequency: 8.381948635418762e-6
allele num: 119304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+45A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+45A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+45A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1021A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+45A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+45A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1021A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+45A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+45A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+45A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

11-72538389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72538389
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72538389
    reference: chr 11
allele count: 1
allele frequency: 8.446659346228567e-6
allele num: 118390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.804+51C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.965+51C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1472+51C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3208+51C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3726+51C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-1015C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-1015C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.965+51C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2760+51C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1226+51C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20677
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5574
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-72539355-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539355
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539353
    reference: chr 11
allele count: 1
allele frequency: 8.299306178003518e-6
allele num: 120492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-48_319-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3209-48_3209-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2761-48_*2761-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3727-48_3727-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.966-48_966-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-48_176-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.805-48_805-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1473-48_1473-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1227-48_*1227-47delGG
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.966-48_966-47delGG
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: TGG
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

11-72539362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539362
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539362
    reference: chr 11
allele count: 7
allele frequency: 5.807200929152149e-5
allele num: 120540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.966-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3209-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3727-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2761-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1227-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1473-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.805-42G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.966-42G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-72539366-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539366
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539366
    reference: chr 11
allele count: 33
allele frequency: 2.735365793007411e-4
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.966-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.966-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1227-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.805-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2761-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3209-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1473-38G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3727-38G>T
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8365
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

11-72539370-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539370
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539371
    reference: chr 11
allele count: 2
allele frequency: 1.656726308813784e-5
allele num: 120720
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.966-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3209-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2761-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.966-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3727-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1473-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1227-32dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.805-32dupT
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

11-72539371-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539371
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539371
    reference: chr 11
allele count: 7
allele frequency: 5.797965742305271e-5
allele num: 120732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.966-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.805-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1227-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2761-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.966-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3209-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1473-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-33T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3727-33T>C
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3846
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

11-72539381-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539381
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539379
    reference: chr 11
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.805-21_805-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176-21_176-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1473-21_1473-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3727-21_3727-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.966-21_966-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.966-21_966-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3209-21_3209-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319-21_319-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1227-21_*1227-20delGT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2761-21_*2761-20delGT
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: CTG
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

11-72539404-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539404
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539404
    reference: chr 11
allele count: 12
allele frequency: 9.903441445902451e-5
allele num: 121170
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1473G>A
  hgvsp: ENST00000321297.5:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.319G>A
  hgvsp: ENSP00000441189.1:p.Gly107Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2761G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.176G>A
  hgvsp: ENST00000541554.1:c.176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3209G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1227G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.966G>A
  hgvsp: ENST00000538973.1:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.966G>A
  hgvsp: ENST00000541367.1:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.805G>A
  hgvsp: ENST00000540222.1:c.805G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3727G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Gly107Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

11-72539411-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539411
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539411
    reference: chr 11
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1480C>T
  hgvsp: ENSP00000326340.5:p.His494Tyr
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2768C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.812C>T
  hgvsp: ENSP00000441747.1:p.His272Tyr
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.973C>T
  hgvsp: ENSP00000441989.1:p.His325Tyr
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.973C>T
  hgvsp: ENSP00000437412.1:p.His325Tyr
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.183C>T
  hgvsp: ENSP00000441132.1:p.His62Tyr
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.326C>T
  hgvsp: ENSP00000441189.1:p.Pro109Leu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3734C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1234C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3216C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His494Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

11-72539413-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539413
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539413
    reference: chr 11
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3218C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.185C>T
  hgvsp: ENST00000541554.1:c.185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1482C>T
  hgvsp: ENST00000321297.5:c.1482C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.814C>T
  hgvsp: ENST00000540222.1:c.814C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.328C>T
  hgvsp: ENST00000534905.1:c.328C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3736C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2770C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.975C>T
  hgvsp: ENST00000538973.1:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.975C>T
  hgvsp: ENST00000541367.1:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1236C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His494His
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

11-72539441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539441
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539441
    reference: chr 11
allele count: 7
allele frequency: 5.769959939992417e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1003C>T
  hgvsp: ENSP00000441989.1:p.Arg335Trp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.213C>T
  hgvsp: ENSP00000441132.1:p.Arg72Trp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1264C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1510C>T
  hgvsp: ENSP00000326340.5:p.Arg504Trp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3246C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3764C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2798C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.356C>T
  hgvsp: ENSP00000441189.1:p.Pro119Leu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1003C>T
  hgvsp: ENSP00000437412.1:p.Arg335Trp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.842C>T
  hgvsp: ENSP00000441747.1:p.Arg282Trp
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg504Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

11-72539442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539442
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539442
    reference: chr 11
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.357G>A
  hgvsp: ENST00000534905.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3765G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2799G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1265G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.843G>A
  hgvsp: ENSP00000441747.1:p.Arg282Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1004G>A
  hgvsp: ENSP00000437412.1:p.Arg335Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3247G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.214G>A
  hgvsp: ENSP00000441132.1:p.Arg72Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1511G>A
  hgvsp: ENSP00000326340.5:p.Arg504Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1004G>A
  hgvsp: ENSP00000441989.1:p.Arg335Gln
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg504Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

11-72539446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539446
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539446
    reference: chr 11
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1008C>T
  hgvsp: ENST00000538973.1:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.218C>T
  hgvsp: ENST00000541554.1:c.218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2803C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1515C>T
  hgvsp: ENST00000321297.5:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1269C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.361C>T
  hgvsp: ENSP00000441189.1:p.His121Tyr
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3769C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1008C>T
  hgvsp: ENST00000541367.1:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3251C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.847C>T
  hgvsp: ENST00000540222.1:c.847C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His121Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

11-72539467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539467
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539467
    reference: chr 11
allele count: 4
allele frequency: 3.296576505299247e-5
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.382C>T
  hgvsp: ENSP00000441189.1:p.Arg128Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2824C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.868C>T
  hgvsp: ENST00000540222.1:c.868C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3272C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1029C>T
  hgvsp: ENST00000538973.1:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.239C>T
  hgvsp: ENST00000541554.1:c.239C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1029C>T
  hgvsp: ENST00000541367.1:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1290C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1536C>T
  hgvsp: ENST00000321297.5:c.1536C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3790C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg128Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

11-72539468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539468
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539468
    reference: chr 11
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.869G>A
  hgvsp: ENSP00000441747.1:p.Asp291Asn
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.383G>A
  hgvsp: ENSP00000441189.1:p.Arg128Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1537G>A
  hgvsp: ENSP00000326340.5:p.Asp513Asn
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1030G>A
  hgvsp: ENSP00000437412.1:p.Asp344Asn
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2825G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1030G>A
  hgvsp: ENSP00000441989.1:p.Asp344Asn
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1291G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.240G>A
  hgvsp: ENSP00000441132.1:p.Asp81Asn
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3273G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3791G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp513Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-72539468-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539468
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539468
    reference: chr 11
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2825G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1030G>C
  hgvsp: ENSP00000441989.1:p.Asp344His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3273G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1537G>C
  hgvsp: ENSP00000326340.5:p.Asp513His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.240G>C
  hgvsp: ENSP00000441132.1:p.Asp81His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1291G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1030G>C
  hgvsp: ENSP00000437412.1:p.Asp344His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3791G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.383G>C
  hgvsp: ENSP00000441189.1:p.Arg128Pro
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.869G>C
  hgvsp: ENSP00000441747.1:p.Asp291His
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp513His
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

11-72539471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539471
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539471
    reference: chr 11
allele count: 7
allele frequency: 5.769008884273682e-5
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3276C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1033C>T
  hgvsp: ENSP00000441989.1:p.Gln345Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.243C>T
  hgvsp: ENSP00000441132.1:p.Gln82Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1540C>T
  hgvsp: ENSP00000326340.5:p.Gln514Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.386C>T
  hgvsp: ENSP00000441189.1:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.872C>T
  hgvsp: ENSP00000441747.1:p.Gln292Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3794C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1033C>T
  hgvsp: ENSP00000437412.1:p.Gln345Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2828C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1294C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln514Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/11-72539473-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539473
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539473
    reference: chr 11
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1542A>C
  hgvsp: ENSP00000326340.5:p.Gln514His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2830A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1296A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1035A>C
  hgvsp: ENSP00000441989.1:p.Gln345His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3278A>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.245A>C
  hgvsp: ENSP00000441132.1:p.Gln82His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.388A>C
  hgvsp: ENSP00000441189.1:p.Thr130Pro
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1035A>C
  hgvsp: ENSP00000437412.1:p.Gln345His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.874A>C
  hgvsp: ENSP00000441747.1:p.Gln292His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3796A>C
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln514His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

11-72539476-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539476
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539476
    reference: chr 11
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1038G>T
  hgvsp: ENST00000538973.1:c.1038G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1299G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.877G>T
  hgvsp: ENST00000540222.1:c.877G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.391G>T
  hgvsp: ENSP00000441189.1:p.Ala131Ser
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.248G>T
  hgvsp: ENST00000541554.1:c.248G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2833G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3281G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1545G>T
  hgvsp: ENST00000321297.5:c.1545G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3799G>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1038G>T
  hgvsp: ENST00000541367.1:c.1038G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala131Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

11-72539489-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539489
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539489
    reference: chr 11
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1051T>C
  hgvsp: ENSP00000441989.1:p.Cys351Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.261T>C
  hgvsp: ENSP00000441132.1:p.Cys88Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1558T>C
  hgvsp: ENSP00000326340.5:p.Cys520Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1051T>C
  hgvsp: ENSP00000437412.1:p.Cys351Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1312T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.404T>C
  hgvsp: ENSP00000441189.1:p.Leu135Pro
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3294T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2846T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3812T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.890T>C
  hgvsp: ENSP00000441747.1:p.Cys298Arg
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7892
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys520Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

11-72539491-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539491
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539491
    reference: chr 11
allele count: 6
allele frequency: 4.945272319662403e-5
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1314T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1053T>C
  hgvsp: ENST00000541367.1:c.1053T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.406T>C
  hgvsp: ENSP00000441189.1:p.Phe136Leu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3814T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2848T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.263T>C
  hgvsp: ENST00000541554.1:c.263T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1053T>C
  hgvsp: ENST00000538973.1:c.1053T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1560T>C
  hgvsp: ENST00000321297.5:c.1560T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.892T>C
  hgvsp: ENST00000540222.1:c.892T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3296T>C
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe136Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-72539493-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539493
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539493
    reference: chr 11
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1055C>G
  hgvsp: ENSP00000441989.1:p.Ser352Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1562C>G
  hgvsp: ENSP00000326340.5:p.Ser521Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1316C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3298C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1055C>G
  hgvsp: ENSP00000437412.1:p.Ser352Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.894C>G
  hgvsp: ENSP00000441747.1:p.Ser299Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2850C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.265C>G
  hgvsp: ENSP00000441132.1:p.Ser89Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.408C>G
  hgvsp: ENSP00000441189.1:p.Phe136Leu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3816C>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser521Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

11-72539495-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539495
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539495
    reference: chr 11
allele count: 7
allele frequency: 5.76948437293947e-5
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1564C>T
  hgvsp: ENSP00000326340.5:p.Arg522Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.410C>T
  hgvsp: ENSP00000441189.1:p.Pro137Leu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1318C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2852C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1057C>T
  hgvsp: ENSP00000437412.1:p.Arg353Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.896C>T
  hgvsp: ENSP00000441747.1:p.Arg300Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3818C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.267C>T
  hgvsp: ENSP00000441132.1:p.Arg90Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3300C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1057C>T
  hgvsp: ENSP00000441989.1:p.Arg353Ter
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg522Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

11-72539496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539496
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539496
    reference: chr 11
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2853G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.268G>A
  hgvsp: ENSP00000441132.1:p.Arg90Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3819G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1319G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.411G>A
  hgvsp: ENST00000534905.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1058G>A
  hgvsp: ENSP00000441989.1:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1058G>A
  hgvsp: ENSP00000437412.1:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.897G>A
  hgvsp: ENSP00000441747.1:p.Arg300Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1565G>A
  hgvsp: ENSP00000326340.5:p.Arg522Gln
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3301G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg522Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

11-72539500-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539500
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539500
    reference: chr 11
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.415C>G
  hgvsp: ENSP00000441189.1:p.Gln139Glu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.901C>G
  hgvsp: ENSP00000441747.1:p.Asp301Glu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1323C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1569C>G
  hgvsp: ENSP00000326340.5:p.Asp523Glu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3823C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1062C>G
  hgvsp: ENSP00000437412.1:p.Asp354Glu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.272C>G
  hgvsp: ENSP00000441132.1:p.Asp91Glu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3305C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2857C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1062C>G
  hgvsp: ENSP00000441989.1:p.Asp354Glu
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp523Glu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-72539502-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539502
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539502
    reference: chr 11
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3825A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1064A>G
  hgvsp: ENSP00000441989.1:p.Asn355Ser
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2859A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.903A>G
  hgvsp: ENSP00000441747.1:p.Asn302Ser
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1571A>G
  hgvsp: ENSP00000326340.5:p.Asn524Ser
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.417A>G
  hgvsp: ENST00000534905.1:c.417A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.274A>G
  hgvsp: ENSP00000441132.1:p.Asn92Ser
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1064A>G
  hgvsp: ENSP00000437412.1:p.Asn355Ser
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3307A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1325A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn524Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

11-72539506-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539506
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539506
    reference: chr 11
allele count: 10
allele frequency: 8.242664029014178e-5
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1575A>G
  hgvsp: ENST00000321297.5:c.1575A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1068A>G
  hgvsp: ENST00000538973.1:c.1068A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2863A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.421A>G
  hgvsp: ENSP00000441189.1:p.Thr141Ala
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.278A>G
  hgvsp: ENST00000541554.1:c.278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1329A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1068A>G
  hgvsp: ENST00000541367.1:c.1068A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.907A>G
  hgvsp: ENST00000540222.1:c.907A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3311A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3829A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr141Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-72539513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539513
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539513
    reference: chr 11
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3318G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3836G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1336G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.428G>A
  hgvsp: ENSP00000441189.1:p.Gly143Asp
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2870G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1075G>A
  hgvsp: ENSP00000441989.1:p.Val359Ile
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.914G>A
  hgvsp: ENSP00000441747.1:p.Val306Ile
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1582G>A
  hgvsp: ENSP00000326340.5:p.Val528Ile
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.285G>A
  hgvsp: ENSP00000441132.1:p.Val96Ile
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1075G>A
  hgvsp: ENSP00000437412.1:p.Val359Ile
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val528Ile
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-72539515-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539515
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539515
    reference: chr 11
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2872C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1338C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1077C>T
  hgvsp: ENST00000541367.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.916C>T
  hgvsp: ENST00000540222.1:c.916C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.430C>T
  hgvsp: ENSP00000441189.1:p.His144Tyr
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.287C>T
  hgvsp: ENST00000541554.1:c.287C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3320C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1584C>T
  hgvsp: ENST00000321297.5:c.1584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1077C>T
  hgvsp: ENST00000538973.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3838C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His144Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

11-72539518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539518
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539518
    reference: chr 11
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.290C>T
  hgvsp: ENST00000541554.1:c.290C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3841C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.919C>T
  hgvsp: ENST00000540222.1:c.919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2875C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1080C>T
  hgvsp: ENST00000541367.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3323C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1341C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1080C>T
  hgvsp: ENST00000538973.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.433C>T
  hgvsp: ENSP00000441189.1:p.Arg145Ter
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1587C>T
  hgvsp: ENST00000321297.5:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg145Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-72539520-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539520
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539520
    reference: chr 11
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.292A>G
  hgvsp: ENSP00000441132.1:p.Asp98Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2877A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.921A>G
  hgvsp: ENSP00000441747.1:p.Asp308Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1082A>G
  hgvsp: ENSP00000441989.1:p.Asp361Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1082A>G
  hgvsp: ENSP00000437412.1:p.Asp361Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3325A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3843A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1589A>G
  hgvsp: ENSP00000326340.5:p.Asp530Gly
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.435A>G
  hgvsp: ENST00000534905.1:c.435A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1343A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp530Gly
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-72539521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539521
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539521
    reference: chr 11
allele count: 7
allele frequency: 5.769294168067781e-5
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3326C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.922C>T
  hgvsp: ENST00000540222.1:c.922C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1590C>T
  hgvsp: ENST00000321297.5:c.1590C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1083C>T
  hgvsp: ENST00000538973.1:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1344C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.436C>T
  hgvsp: ENSP00000441189.1:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441132
  ensembl transcript: ENST00000541554
  gene symbol: ATG16L2
  hgvsc: ENST00000541554.1:c.293C>T
  hgvsp: ENST00000541554.1:c.293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2878C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1083C>T
  hgvsp: ENST00000541367.1:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3844C>T
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro146Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

11-72539525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539525
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539525
    reference: chr 11
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3848C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3330C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1348C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1594C>T
  hgvsp: ENSP00000326340.5:p.Arg532Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2882C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1087C>T
  hgvsp: ENSP00000441989.1:p.Arg363Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.926C>T
  hgvsp: ENSP00000441747.1:p.Arg310Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1087C>T
  hgvsp: ENSP00000437412.1:p.Arg363Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.440C>T
  hgvsp: ENSP00000441189.1:p.Ala147Val
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg532Cys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

11-72539526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539526
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539526
    reference: chr 11
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3331G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1088G>A
  hgvsp: ENSP00000437412.1:p.Arg363His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2883G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1595G>A
  hgvsp: ENSP00000326340.5:p.Arg532His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.441G>A
  hgvsp: ENST00000534905.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1088G>A
  hgvsp: ENSP00000441989.1:p.Arg363His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.927G>A
  hgvsp: ENSP00000441747.1:p.Arg310His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3849G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1349G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9089
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg532His
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

11-72539526-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539526
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539526
    reference: chr 11
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.441G>C
  hgvsp: ENST00000534905.1:c.441G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2883G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3849G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1088G>C
  hgvsp: ENSP00000441989.1:p.Arg363Pro
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1595G>C
  hgvsp: ENSP00000326340.5:p.Arg532Pro
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1349G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.927G>C
  hgvsp: ENSP00000441747.1:p.Arg310Pro
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3331G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1088G>C
  hgvsp: ENSP00000437412.1:p.Arg363Pro
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg532Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-72539526-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539526
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539527
    reference: chr 11
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3332dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.442dupT
  hgvsp: ENSP00000441189.1:p.Cys148LeufsTer28
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1089dupT
  hgvsp: ENSP00000437412.1:p.Val364CysfsTer18
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3850dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1596dupT
  hgvsp: ENSP00000326340.5:p.Val533CysfsTer18
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1089dupT
  hgvsp: ENSP00000441989.1:p.Val364CysfsTer18
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1350dupT
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.928dupT
  hgvsp: ENSP00000441747.1:p.Val311CysfsTer18
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2884dupT
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val533CysfsTer18
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

11-72539527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539527
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539527
    reference: chr 11
allele count: 2
allele frequency: 1.648424106554134e-5
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2884T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1596T>C
  hgvsp: ENST00000321297.5:c.1596T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.928T>C
  hgvsp: ENST00000540222.1:c.928T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3332T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.442T>C
  hgvsp: ENSP00000441189.1:p.Cys148Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1089T>C
  hgvsp: ENST00000541367.1:c.1089T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3850T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1089T>C
  hgvsp: ENST00000538973.1:c.1089T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1350T>C
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys148Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-72539540-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539540
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539540
    reference: chr 11
allele count: 6
allele frequency: 4.946903238572654e-5
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.455C>T
  hgvsp: ENSP00000441189.1:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3345C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.941C>T
  hgvsp: ENSP00000441747.1:p.Arg315Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1102C>T
  hgvsp: ENSP00000437412.1:p.Arg368Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1102C>T
  hgvsp: ENSP00000441989.1:p.Arg368Cys
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3863C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1363C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2897C>T
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1609C>T
  hgvsp: ENSP00000326340.5:p.Arg537Cys
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8978
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg537Cys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-72539541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539541
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539541
    reference: chr 11
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.456G>A
  hgvsp: ENST00000534905.1:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1103G>A
  hgvsp: ENSP00000437412.1:p.Arg368His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1103G>A
  hgvsp: ENSP00000441989.1:p.Arg368His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3864G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2898G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.942G>A
  hgvsp: ENSP00000441747.1:p.Arg315His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1364G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1610G>A
  hgvsp: ENSP00000326340.5:p.Arg537His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3346G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg537His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-72539544-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539544
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539544
    reference: chr 11
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1367A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1106A>G
  hgvsp: ENSP00000437412.1:p.Gln369Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2901A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.945A>G
  hgvsp: ENSP00000441747.1:p.Gln316Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1613A>G
  hgvsp: ENSP00000326340.5:p.Gln538Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3867A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1106A>G
  hgvsp: ENSP00000441989.1:p.Gln369Arg
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.459A>G
  hgvsp: ENST00000534905.1:c.459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3349A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln538Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

11-72539545-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539545
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539545
    reference: chr 11
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1107G>C
  hgvsp: ENSP00000441989.1:p.Gln369His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3350G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2902G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1614G>C
  hgvsp: ENSP00000326340.5:p.Gln538His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.946G>C
  hgvsp: ENSP00000441747.1:p.Gln316His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1368G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1107G>C
  hgvsp: ENSP00000437412.1:p.Gln369His
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3868G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.460G>C
  hgvsp: ENSP00000441189.1:p.Gly154Arg
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3352
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln538His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-72539555-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539555
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539555
    reference: chr 11
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1622+2T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1115+2T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1376+2T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3358+2T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.468+2T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3878T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1115+2T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2910+2T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.954+2T>C
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3904
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1622+2T>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

11-72539560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539560
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539560
    reference: chr 11
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1622+7G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3883G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2910+7G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3358+7G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1376+7G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1115+7G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.468+7G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1115+7G>A
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.954+7G>A
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1622+7G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

11-72539560-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539560
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539559
    reference: chr 11
allele count: 3
allele frequency: 2.475615190374808e-5
allele num: 121182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2910+9delC
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3358+9delC
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1622+9delC
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1115+9delC
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3885delC
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.468+9delC
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.954+9delC
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1115+9delC
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1376+9delC
  variant of: http://identifiers.org/hgnc/25464
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7696
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1622+9delC
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: GC
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

11-72539565-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539565
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539565
    reference: chr 11
allele count: 580
allele frequency: 4.788244035333939e-3
allele num: 121130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3358+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2910+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.954+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.468+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1622+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1115+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1376+12A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3888A>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1115+12A>G
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 8.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 7.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 8.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 278
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 15
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

11-72539566-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539566
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539566
    reference: chr 11
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.468+13T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1622+13T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3358+13T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1115+13T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1376+13T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.954+13T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3889T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2910+13T>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1115+13T>C
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

11-72539583-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539583
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539583
    reference: chr 11
allele count: 3
allele frequency: 2.480856060731356e-5
allele num: 120926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1115+30G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1376+30G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3906G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1115+30G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3358+30G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1622+30G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.468+30G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2910+30G>C
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.954+30G>C
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-72539585-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72539585
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72539585
    reference: chr 11
allele count: 1
allele frequency: 8.271845945141119e-6
allele num: 120892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441989
  ensembl transcript: ENST00000538973
  gene symbol: ATG16L2
  hgvsc: ENST00000538973.1:c.1115+32C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000400705
  ensembl transcript: ENST00000435507
  gene symbol: ATG16L2
  hgvsc: ENST00000435507.2:c.*1376+32C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000439504
  gene symbol: ATG16L2
  hgvsc: ENST00000439504.2:n.3358+32C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000326340
  ensembl transcript: ENST00000321297
  gene symbol: ATG16L2
  hgvsc: ENST00000321297.5:c.1622+32C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441747
  ensembl transcript: ENST00000540222
  gene symbol: ATG16L2
  hgvsc: ENST00000540222.1:c.954+32C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168010
  ensembl transcript: ENST00000536995
  gene symbol: ATG16L2
  hgvsc: ENST00000536995.1:n.3908C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000441189
  ensembl transcript: ENST00000534905
  gene symbol: ATG16L2
  hgvsc: ENST00000534905.1:c.468+32C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000442635
  ensembl transcript: ENST00000544490
  gene symbol: ATG16L2
  hgvsc: ENST00000544490.1:c.*2910+32C>G
  variant of: http://identifiers.org/hgnc/25464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168010
  ensembl protein: ENSP00000437412
  ensembl transcript: ENST00000541367
  gene symbol: ATG16L2
  hgvsc: ENST00000541367.1:c.1115+32C>G
  variant of: http://identifiers.org/hgnc/25464
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3019
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8685
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

DP
type: SiteQuality
SIO_000300: 1.633523e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.201e0

QD
type: SiteQuality
SIO_000300: 1.558e1

GenotypeQuality
all individuals: 942
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3817
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 1.633542e6

QD
type: SiteQuality
SIO_000300: 1.072e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

MQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

FS
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3818
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.633511e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66700
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Other
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allele frequency: 1.103752759381898e-3
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MQRankSum
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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African
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 8.998200359928014e-5
allele num: 66680
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African
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Other
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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African
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European (Non-Finnish)
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South Asian
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FS
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VQSLOD
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DP
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MQ
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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East Asian
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African
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South Asian
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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MQRankSum
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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Latino
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East Asian
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.629283e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

FS
type: SiteQuality
SIO_000300: 1.1914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

QD
type: SiteQuality
SIO_000300: 2.15e0

GenotypeQuality
all individuals: 8567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.738544474393531e-4
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.428363283147159e-4
allele num: 16472
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.626472e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

FS
type: SiteQuality
SIO_000300: 1.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 941
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GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.624297e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.782e0

VQSLOD
type: SiteQuality
SIO_000300: -2.287e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 294
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 632
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3807
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 756
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variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.932e0

DP
type: SiteQuality
SIO_000300: 1.621452e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 293
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 2947
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variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
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variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8452
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601908065915004e-4
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.575e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.207e0

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.621301e6

QD
type: SiteQuality
SIO_000300: 1.481e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 2947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
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variant carriers: 0

GenotypeQuality
all individuals: 8452
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
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variant carriers: 0

GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
all individuals: 940
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
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variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.575e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.207e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

DP
type: SiteQuality
SIO_000300: 1.621301e6

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.481e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1774
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variant carriers: 0

GenotypeQuality
all individuals: 477
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variant carriers: 0

GenotypeQuality
all individuals: 938
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 8309
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 756
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GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 3813
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 693
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variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513993379476377e-5
allele num: 66460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

DP
type: SiteQuality
SIO_000300: 1.61122e6

FS
type: SiteQuality
SIO_000300: 3.897e0

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.626e0

GenotypeQuality
all individuals: 938
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 503
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 175
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GenotypeQuality
all individuals: 36050
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3805
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 701
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009872381411028e-5
allele num: 66448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 2.356e0

VQSLOD
type: SiteQuality
SIO_000300: 9.19e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.069e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.611883e6

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-2

GenotypeQuality
all individuals: 3803
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1329
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 745
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2707
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508932882665379e-5
allele num: 66272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 1.928e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 1.568588e6

QD
type: SiteQuality
SIO_000300: 1.209e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.659e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.936108422071636e-4
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.974e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 1.560748e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.023e1

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.655e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.209e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522997258604934e-5
allele num: 65660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.506586e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 2.171e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2044
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2209
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variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.934953538241601e-5
allele num: 11192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.503045e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.368e1

VQSLOD
type: SiteQuality
SIO_000300: -3.428e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.093e0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.446e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 552
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 730
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variant carriers: 0

GenotypeQuality
all individuals: 32685
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507658907248824e-5
allele num: 66328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.624e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.838e0

DP
type: SiteQuality
SIO_000300: 2.667867e6

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.051175656984786e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.224e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 1.426e0

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.673044e6

MQRankSum
type: SiteQuality
SIO_000300: -2.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

QD
type: SiteQuality
SIO_000300: 1.158e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 33

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.465943339361061e-4
allele num: 66360
num of homozygotes: 0

South Asian
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allele count: 10
allele frequency: 6.178178672927221e-4
allele num: 16186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 2.678438e6

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

FS
type: SiteQuality
SIO_000300: 1.404e0

QD
type: SiteQuality
SIO_000300: 1.264e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3325
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66400
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MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.682821e6

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.618e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

FS
type: SiteQuality
SIO_000300: 2.082e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 392
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.05412161551667e-4
allele num: 66406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

QD
type: SiteQuality
SIO_000300: 1.376e1

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

FS
type: SiteQuality
SIO_000300: 1.286e0

DP
type: SiteQuality
SIO_000300: 2.683831e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13195977434388e-5
allele num: 16308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 2.693147e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.669e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.487e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.224e0

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.428363283147159e-4
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.051398359818559e-4
allele num: 66578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.70385e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 2.771e0

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.419e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3852
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.308e0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 3.237e0

DP
type: SiteQuality
SIO_000300: 2.705068e6

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 1.075e1

GenotypeQuality
all individuals: 8984
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.41e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 1.0066e1

VQSLOD
type: SiteQuality
SIO_000300: -3.639e-1

DP
type: SiteQuality
SIO_000300: 2.70534e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.996e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2141
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924187030979411e-4
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.320027648176948e-4
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 3.435e0

DP
type: SiteQuality
SIO_000300: 2.706854e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.64e-1

QD
type: SiteQuality
SIO_000300: 1.434e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 1.292e0

QD
type: SiteQuality
SIO_000300: 1.396e1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.70672e6

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.261e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 4.89e0

DP
type: SiteQuality
SIO_000300: 2.706614e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.816860465116279e-4
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East Asian
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African
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Latino
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ReadPosRankSum
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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Other
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African
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European (Non-Finnish)
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South Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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East Asian
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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Other
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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African
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Latino
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Other
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African
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European (Non-Finnish)
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Latino
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East Asian
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Other
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DP
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Latino
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East Asian
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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Latino
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South Asian
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European (Non-Finnish)
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East Asian
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MQ
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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allele num: 66684
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East Asian
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South Asian
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Other
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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FS
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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East Asian
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Latino
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DP
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FS
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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Other
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MQRankSum
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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South Asian
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ReadPosRankSum
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MQ
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DP
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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Other
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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DP
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QD
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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African
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MQRankSum
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FS
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DP
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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FS
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BaseQRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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South Asian
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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DP
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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East Asian
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European (Non-Finnish)
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MQ
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DP
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.501530520376928e-5
allele num: 66644
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.468208092485549e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.705236e6

MQRankSum
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BaseQRankSum
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SIO_000300: 9.17e-1

QD
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: -3.51e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 1.23e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
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SIO_000300: 1.212e0

ClippingRankSum
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SIO_000300: -1.981e0

MQRankSum
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SIO_000300: -2.71e-1

MQ
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.806e0

QD
type: SiteQuality
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DP
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SIO_000300: 2.705004e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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African
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allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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SIO_000300: -1.151e0

FS
type: SiteQuality
SIO_000300: 3.323e0

MQ
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.902e0

BaseQRankSum
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SIO_000300: -2.648e0

InbreedingCoeff
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.70451e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

QD
type: SiteQuality
SIO_000300: 1.054e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

FS
type: SiteQuality
SIO_000300: 4.038e0

DP
type: SiteQuality
SIO_000300: 2.704495e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.534e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

DP
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SIO_000300: 2.703031e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

FS
type: SiteQuality
SIO_000300: 7.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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DP
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FS
type: SiteQuality
SIO_000300: 1.0386e1

MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.00318337437684e-5
allele num: 66596
num of homozygotes: 0

East Asian
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South Asian
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0386e1

BaseQRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 565

GenotypeQuality
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Other
type: Population
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allele num: 904
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South Asian
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allele num: 16426
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East Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 242
allele frequency: 3.635052723285367e-3
allele num: 66574
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European (Finnish)
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allele count: 315
allele frequency: 4.762624735409737e-2
allele num: 6614
num of homozygotes: 13

DP
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SIO_000300: 2.725751e6

MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 6.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 6.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.078e1

FS
type: SiteQuality
SIO_000300: 1.665e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.03e-1

DP
type: SiteQuality
SIO_000300: 2.698417e6

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3300
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32620
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.891844997108155e-4
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

FS
type: SiteQuality
SIO_000300: 7.433e0

QD
type: SiteQuality
SIO_000300: 1.356e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 2.681578e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
all individuals: 6852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32620
bin: 9.75e1
variant carriers: 1